BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC124963.10 - phase: 0 /pseudo
(214 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g32110 non-LTR reverse transcriptase, putative 39 0.003
At2g31080 putative non-LTR retroelement reverse transcriptase 38 0.003
At2g07650 putative non-LTR retrolelement reverse transcriptase 37 0.006
At2g07730 putative non-LTR retroelement reverse transcriptase 33 0.086
At5g02980 putative protein 30 1.2
At4g08830 putative protein 30 1.2
At2g45230 putative non-LTR retroelement reverse transcriptase 29 1.6
At5g12260 unknown protein 29 2.1
At4g07516 putative protein 28 4.7
orf154 -mitochondrial genome- 27 6.2
At3g30570 putative reverse transcriptase 27 6.2
At2g33010 hypothetical protein 27 6.2
At1g24640 hypothetical protein 27 6.2
At2g17910 putative non-LTR retroelement reverse transcriptase 27 8.1
>At3g32110 non-LTR reverse transcriptase, putative
Length = 1911
Score = 38.5 bits (88), Expect = 0.003
Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 10/129 (7%)
Query: 75 FFWGRGERRPQENYLG*LEFCLS--ESG-GWRFEGKENKRI*FSIIREVVLVDRDSLWFR 131
F WG + +++ + CL E G G R NK + + + VL D SLW +
Sbjct: 1364 FLWGSTLEKKKQHLVAWTRVCLPRREGGLGIRSATAMNKAL-IAKVGWRVLNDGSSLWAQ 1422
Query: 132 VLAAR---NGVEGGNLCSGGRDGSAWWRNIAA-LPSEGWFHNNVSRSLGDGSSVLFWTDV 187
V+ ++ V N + S+ WR++ L W + +GDG + FWTD
Sbjct: 1423 VVRSKYKVGDVHDRNWTVAKSNWSSTWRSVGVGLRDVIWREQHWV--IGDGRQIRFWTDR 1480
Query: 188 WVGELSLHD 196
W+ E + D
Sbjct: 1481 WLSETPIAD 1489
>At2g31080 putative non-LTR retroelement reverse transcriptase
Length = 1231
Score = 38.1 bits (87), Expect = 0.003
Identities = 34/127 (26%), Positives = 55/127 (42%), Gaps = 20/127 (15%)
Query: 75 FFWGRGERRPQENYLG*LEFCL--SESG-GWRFEGKENKRI*FSIIREVVLVDRDSLWFR 131
F WG + +++ L + C +E G G R NK + + + +L D++SLW R
Sbjct: 688 FLWGSTMEKKKQHLLSWRKICKPKAEGGIGLRSARDMNKAL-VAKVGWRLLQDKESLWAR 746
Query: 132 VLAARNGVEGGNLCSGGRDGSAW---WRNIAA------LPSEGWFHNNVSRSLGDGSSVL 182
V+ + V G S + W WR++A + GW GDG ++
Sbjct: 747 VVRKKYKVGGVQDTSWLKPQPRWSSTWRSVAVGLREVVVKGVGWVP-------GDGCTIR 799
Query: 183 FWTDVWV 189
FW D W+
Sbjct: 800 FWLDRWL 806
>At2g07650 putative non-LTR retrolelement reverse transcriptase
Length = 732
Score = 37.4 bits (85), Expect = 0.006
Identities = 32/137 (23%), Positives = 55/137 (39%), Gaps = 30/137 (21%)
Query: 75 FFWGRGERRPQENYLG*LEFCL--SESGGWRFEGKENKRI*FSIIREVVLVDRDSLWFRV 132
F WG + +++ + C SE G + ++ + S + ++ D SLW R+
Sbjct: 350 FLWGSSVTQRKQHLISWKRVCKPRSEGGLGIRKAQDMNKALLSKVGWRLIQDYHSLWARI 409
Query: 133 LAARNGVEGGNLCSGGRDG---------SAWWRNIA------ALPSEGWFHNNVSRSLGD 177
+ V+ RDG S+ WR++A +P W +GD
Sbjct: 410 MRCNYRVQDV------RDGAWTKVRSVCSSTWRSVALGMREVVIPGLSWV-------IGD 456
Query: 178 GSSVLFWTDVWVGELSL 194
G +LFW D W+ + L
Sbjct: 457 GREILFWMDKWLTNIPL 473
>At2g07730 putative non-LTR retroelement reverse transcriptase
Length = 970
Score = 33.5 bits (75), Expect = 0.086
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Query: 121 VLVDRDSLWFRVLAARNGV---EGGNLCSGGRDGSAWWRNIAALPSEGWFHNNVSRSLGD 177
+L D+++LW RVL+ + V + N S+ WR++ E V GD
Sbjct: 518 LLHDKETLWARVLSKKYKVGEMQNSNWLKPKSSWSSTWRSVTVGLREV-VAKGVRWVPGD 576
Query: 178 GSSVLFWTDVWV 189
G ++ FW+D W+
Sbjct: 577 GKTISFWSDRWL 588
>At5g02980 putative protein
Length = 335
Score = 29.6 bits (65), Expect = 1.2
Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 11/62 (17%)
Query: 136 RNGVEGGNLCSGGRDGSAWWRNIAALPSEGWFHNNVSRSLGDGSSVLFWTDVWVGELSLH 195
RN + + GGR + WW+++ +G G S F T++W E+S
Sbjct: 249 RNHLSYVDKSGGGRRVTVWWKSVVVFGCQGL-----------GYSTEFDTEIWCAEISFE 297
Query: 196 DR 197
R
Sbjct: 298 RR 299
>At4g08830 putative protein
Length = 947
Score = 29.6 bits (65), Expect = 1.2
Identities = 21/74 (28%), Positives = 32/74 (42%), Gaps = 22/74 (29%)
Query: 124 DRDSLWFRVLAARNGVEGGNLCSGGRDGSAWWRNIAALPSEGWFHNNVSRSLGDGSSVLF 183
DR SLW R+L ++ V + S G S W +G+G +LF
Sbjct: 553 DRYSLWARILRSKYRVGLREVVSRG---SRW-------------------VVGNGRDILF 590
Query: 184 WTDVWVGELSLHDR 197
W+D W+ +L +R
Sbjct: 591 WSDNWLSHEALINR 604
>At2g45230 putative non-LTR retroelement reverse transcriptase
Length = 1374
Score = 29.3 bits (64), Expect = 1.6
Identities = 17/72 (23%), Positives = 34/72 (46%), Gaps = 5/72 (6%)
Query: 121 VLVDRDSLWFRVLAARNGVEGGNLCS--GGRDGSAWWRNIAALPSEGWFHNNVSRSLGDG 178
++ ++DSL +V +R + L + G R AW + ++ + +G+G
Sbjct: 873 MITEKDSLMAKVFKSRYFSKSDPLNAPLGSRPSFAWK---SIYEAQVLIKQGIRAVIGNG 929
Query: 179 SSVLFWTDVWVG 190
++ WTD W+G
Sbjct: 930 ETINVWTDPWIG 941
>At5g12260 unknown protein
Length = 624
Score = 28.9 bits (63), Expect = 2.1
Identities = 16/38 (42%), Positives = 26/38 (68%), Gaps = 4/38 (10%)
Query: 169 NNVSRSLGDGSSVLFWTDVWVGELSLHDRFSRLYELSL 206
N+V++SLGDG V++W+ E++ + S+L ELSL
Sbjct: 574 NSVNQSLGDGKPVVYWSP----EVAPNMIRSKLEELSL 607
>At4g07516 putative protein
Length = 740
Score = 27.7 bits (60), Expect = 4.7
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 171 VSRSLGDGSSVLFWTDVWVGELSL 194
+S +GDG + FW+D W+ + L
Sbjct: 409 ISWVIGDGKEIRFWSDTWLTDRPL 432
>orf154 -mitochondrial genome-
Length = 154
Score = 27.3 bits (59), Expect = 6.2
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 145 CSGGRDGSAWWRNIAALPSEGWFHNNVSRSLGDGSSVLFWTDVWV 189
CS G S WR+I + + R++GDG W D W+
Sbjct: 102 CSVGTRPSYAWRSI--IHGRELLSRGLLRTIGDGIHTKVWLDRWI 144
>At3g30570 putative reverse transcriptase
Length = 1099
Score = 27.3 bits (59), Expect = 6.2
Identities = 14/51 (27%), Positives = 20/51 (38%), Gaps = 13/51 (25%)
Query: 152 SAWWRNIA------ALPSEGWFHNNVSRSLGDGSSVLFWTDVWVGELSLHD 196
S+ WR++ P W +GDG + FW D W+ L D
Sbjct: 845 SSTWRSVGIGIREVVYPGYSWV-------IGDGRQIRFWRDKWLSSTPLLD 888
>At2g33010 hypothetical protein
Length = 649
Score = 27.3 bits (59), Expect = 6.2
Identities = 18/54 (33%), Positives = 26/54 (47%), Gaps = 11/54 (20%)
Query: 161 LPSEGWFHNNVSRSLGDGSSV---LFWTDVWVGELSLHDRFSRLYELSLLKGKT 211
LPSE FH++V LGD SS L DV D F +Y++ ++ +
Sbjct: 219 LPSESQFHDSVGYQLGDHSSSFSGLMNVDV--------DEFGDVYDIPIMSSSS 264
>At1g24640 hypothetical protein
Length = 1270
Score = 27.3 bits (59), Expect = 6.2
Identities = 11/39 (28%), Positives = 18/39 (45%), Gaps = 9/39 (23%)
Query: 162 PSEGW---------FHNNVSRSLGDGSSVLFWTDVWVGE 191
PS GW + + +GDG+S+ W D W+ +
Sbjct: 867 PSFGWRSILFGRELLSKGLQKRVGDGASLFVWIDPWIDD 905
>At2g17910 putative non-LTR retroelement reverse transcriptase
Length = 1344
Score = 26.9 bits (58), Expect = 8.1
Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 10/82 (12%)
Query: 121 VLVDRDSLWFRVLAARNGVEGGNLCS--GGRDGSAWWRNIAALPSEGWFHNNVSRSLGDG 178
VL ++ SL+ RV +R L + G R AW R+I L + +G+G
Sbjct: 851 VLQEKGSLFSRVFQSRYFSNSDFLSATRGSRPSYAW-RSI--LFGRELLMQGLRTVIGNG 907
Query: 179 SSVLFWTDVWVGELSLHDRFSR 200
WTD W LHD +R
Sbjct: 908 QKTFVWTDKW-----LHDGSNR 924
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.339 0.152 0.545
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,991,908
Number of Sequences: 26719
Number of extensions: 217716
Number of successful extensions: 574
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 562
Number of HSP's gapped (non-prelim): 17
length of query: 214
length of database: 11,318,596
effective HSP length: 95
effective length of query: 119
effective length of database: 8,780,291
effective search space: 1044854629
effective search space used: 1044854629
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.8 bits)
S2: 58 (26.9 bits)
Medicago: description of AC124963.10