BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC124953.9 - phase: 0
(95 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g31480 hypothetical protein 87 2e-18
At5g59070 hexosyltransferase - like protein 27 1.3
At5g23150 transcription factor-like protein (gb|AAD31171.1) 27 1.3
At5g63800 beta-galactosidase like protein 26 3.9
At5g41910 unknown protein (At5g41910) 26 3.9
At3g11580 DNA binding protein like 26 3.9
At5g66310 kinesin heavy chain DNA binding protein-like 25 5.1
At5g52500 unknown protein (At5g52500) 25 5.1
At5g11470 putative protein 25 5.1
At3g02260 unknown protein 25 5.1
At3g45810 respiratory burst oxidase - like protein 25 6.6
At3g16180 putative transport protein 25 6.6
At1g26665 unknown protein 25 6.6
At5g64440 putative protein 25 8.7
>At1g31480 hypothetical protein
Length = 869
Score = 86.7 bits (213), Expect = 2e-18
Identities = 40/52 (76%), Positives = 42/52 (79%)
Query: 12 PDLLKNTPSNIARLKDVVEQSKARQKYLAHTNSSSDGGDVRWYFCKTSLAHN 63
PDLLKNTPSNIARL+DV+EQ RQKYLA T S SDG DVRWYFCK LA N
Sbjct: 18 PDLLKNTPSNIARLEDVIEQCHGRQKYLAQTRSPSDGSDVRWYFCKVPLAEN 69
>At5g59070 hexosyltransferase - like protein
Length = 519
Score = 27.3 bits (59), Expect = 1.3
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 17 NTPSNIARLKDVVEQSKARQKYLAHTNSSSDGGDV 51
++P+ R K VVE+ K Q+Y H +S GDV
Sbjct: 248 SSPALTERAKRVVEEVKFFQRYAHHVATSDHCGDV 282
>At5g23150 transcription factor-like protein (gb|AAD31171.1)
Length = 1392
Score = 27.3 bits (59), Expect = 1.3
Identities = 13/31 (41%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Query: 18 TPSNIARLKDVVEQSKARQKYLAHTNSSSDG 48
TP + A +KD++ ++A++K LAHT +S G
Sbjct: 656 TPDSAASMKDLIAAAQAKRK-LAHTQNSIFG 685
>At5g63800 beta-galactosidase like protein
Length = 657
Score = 25.8 bits (55), Expect = 3.9
Identities = 16/53 (30%), Positives = 21/53 (39%), Gaps = 4/53 (7%)
Query: 6 NTPVLLPDLLKNTPSNIARLKDVVEQ----SKARQKYLAHTNSSSDGGDVRWY 54
NT V P + N P N ++ + S L HTN + D D WY
Sbjct: 366 NTRVTTPVQVFNVPDNWNLFRETIPAFPGTSLKTNALLEHTNLTKDKTDYLWY 418
>At5g41910 unknown protein (At5g41910)
Length = 186
Score = 25.8 bits (55), Expect = 3.9
Identities = 14/43 (32%), Positives = 20/43 (45%)
Query: 10 LLPDLLKNTPSNIARLKDVVEQSKARQKYLAHTNSSSDGGDVR 52
LL +L + P + R +D+ A K LA T S GD +
Sbjct: 139 LLEELEQAFPDEVDRYRDIRASYAAEAKRLAQTQSVLPNGDAK 181
>At3g11580 DNA binding protein like
Length = 267
Score = 25.8 bits (55), Expect = 3.9
Identities = 10/32 (31%), Positives = 20/32 (62%)
Query: 18 TPSNIARLKDVVEQSKARQKYLAHTNSSSDGG 49
TPS++ +L +V + +KY N++++GG
Sbjct: 34 TPSDVGKLNRLVIPKQHAEKYFPLNNNNNNGG 65
>At5g66310 kinesin heavy chain DNA binding protein-like
Length = 1037
Score = 25.4 bits (54), Expect = 5.1
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 53 WYFCKTSLAHNGMYYVL 69
W+ CK S+AH +++L
Sbjct: 898 WHVCKVSMAHRSYFFLL 914
>At5g52500 unknown protein (At5g52500)
Length = 363
Score = 25.4 bits (54), Expect = 5.1
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 7/47 (14%)
Query: 14 LLKNTPSNIARLKDVVEQSKARQKYLAH-------TNSSSDGGDVRW 53
LL N+PS+ R +++EQ L H T+SSS V W
Sbjct: 144 LLFNSPSSTTRFTELIEQENNSFLKLVHVHRNDSMTSSSSSSEHVIW 190
>At5g11470 putative protein
Length = 691
Score = 25.4 bits (54), Expect = 5.1
Identities = 13/45 (28%), Positives = 23/45 (50%), Gaps = 5/45 (11%)
Query: 50 DVRWYFCKTSLAHNGMYYVLSSICS-FCCINLI----LYYFTTLL 89
D R +FCK ++ + + S C + C +++ YY TT+L
Sbjct: 470 DARMWFCKNTILKGAVLFYSPSHCMLYSCSDVLSFFSSYYVTTML 514
>At3g02260 unknown protein
Length = 5079
Score = 25.4 bits (54), Expect = 5.1
Identities = 17/59 (28%), Positives = 26/59 (43%), Gaps = 7/59 (11%)
Query: 22 IARLKDVVEQSKARQKYLAH-----TNSSSDGGDVRWYFCKTS--LAHNGMYYVLSSIC 73
+A L E+ ++YLA T+S S+ + WYFC T G V + +C
Sbjct: 1553 VASLDKEDEEDANSERYLASKVCTFTSSGSNFMEQHWYFCYTCDLTVSKGCCSVCAKVC 1611
>At3g45810 respiratory burst oxidase - like protein
Length = 835
Score = 25.0 bits (53), Expect = 6.6
Identities = 14/30 (46%), Positives = 16/30 (52%), Gaps = 1/30 (3%)
Query: 57 KTSLAHNGMYYVLSS-ICSFCCINLILYYF 85
K A NG+ V S +CSF C L YYF
Sbjct: 803 KLQHAKNGVDIVSESRVCSFFCTLLSTYYF 832
>At3g16180 putative transport protein
Length = 591
Score = 25.0 bits (53), Expect = 6.6
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 44 SSSDGGDVRWYFCKTSLAHNGMYYVLSSICSFCCINLILY 83
+SS G+V W + H YY + +I SF +N+I Y
Sbjct: 521 NSSKQGNVSWIEDNINKGHYDYYYWVLAILSF--VNVIYY 558
>At1g26665 unknown protein
Length = 189
Score = 25.0 bits (53), Expect = 6.6
Identities = 12/43 (27%), Positives = 21/43 (47%)
Query: 10 LLPDLLKNTPSNIARLKDVVEQSKARQKYLAHTNSSSDGGDVR 52
+L +L +N P + +++ S A K LA + S GD +
Sbjct: 142 ILEELEQNFPDEVDMYREIRASSAAEAKRLAQSQSVLPNGDAK 184
>At5g64440 putative protein
Length = 607
Score = 24.6 bits (52), Expect = 8.7
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 4 GSNTPVLLPDLLKNTPSNIARLKDVV 29
G PV+ PD LKN +NI D++
Sbjct: 514 GMTAPVIPPDALKNGETNIQVTTDLM 539
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.323 0.137 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,192,742
Number of Sequences: 26719
Number of extensions: 78713
Number of successful extensions: 208
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 200
Number of HSP's gapped (non-prelim): 14
length of query: 95
length of database: 11,318,596
effective HSP length: 71
effective length of query: 24
effective length of database: 9,421,547
effective search space: 226117128
effective search space used: 226117128
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)
Medicago: description of AC124953.9