BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC124952.8 - phase: 0 /pseudo
         (819 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At3g48200 unknown protein                                             580  e-165
At4g23460 beta adaptin - like protein                                  31  3.2
At4g26900 glutamine amidotransferase/cyclase                           29  9.3
At4g11380 beta-adaptin - like protein                                  29  9.3

>At3g48200 unknown protein
          Length = 1088

 Score =  580 bits (1495), Expect = e-165
 Identities = 327/632 (51%), Positives = 407/632 (63%), Gaps = 85/632 (13%)

Query: 259  TISTASLQSVDTFTRSSSFLIVDPARNLFRILCHIQVFALARWLSVKWPVEFYEFSRHLQ 318
            T+ST SL S+  F R S +LI DP RNLFR  CHIQ FAL RWL V  PV++YE  R +Q
Sbjct: 471  TLSTTSLYSLGAFPRPSPYLISDPTRNLFRTACHIQFFALTRWLPVTLPVDYYELVRGIQ 530

Query: 319  WTIPSFSVPWESGPMSLFMVGSSPF-GSSSSSAKALATIPNMLLGQNLNYGASVYGSPLT 377
            W IP F +PWE+      MV +SP+ G  S  +K    + N+    N     SV+G PLT
Sbjct: 531  WIIPYFPLPWETKIKEQIMVATSPYIGPHSFISKTHNNMINLKTSTNAE---SVFGLPLT 587

Query: 378  SSEYQQYFERN------------------------------------------------- 388
            + EY+ +FE +                                                 
Sbjct: 588  AMEYRLFFETSNLKPEAEHVLGLPHSTVWRDFNRIMFWIAIIGGSLVLLHIVLSLILKFK 647

Query: 389  ---SEKNGTYGALVFPRFEIFLLFLALPGICKASTGLIRG------GAPAAMAVGIILLI 439
               SEK  ++GA VFPRFE+FLL LALP ICKA+  LI+G       A A++ VGI++L 
Sbjct: 648  KAHSEKKRSFGAFVFPRFELFLLILALPSICKAARSLIQGYFKHQGAAEASVIVGILVLC 707

Query: 440  FVSTVLLALFMFLSVGITFGKLLQYKEVHHEGETFHWYQELIRVTLGPGKRGQWTWKEKA 499
             V+ +LLALF+FLSVGITFGKLLQYKE+H EG+TFHWYQELIRVTLGPGKRGQWTWK + 
Sbjct: 708  VVAILLLALFLFLSVGITFGKLLQYKEIHQEGQTFHWYQELIRVTLGPGKRGQWTWKTE- 766

Query: 500  KSVYLTIFGPLFEDLRGPPKYMLSQISGGSQ-PSQNDHIIVSDDETEDAEAPFIQKLFGI 558
             SVYLT  GP+FEDLRGPPKYML+QISG +    Q+D II SDDE EDAEAP IQKLFGI
Sbjct: 767  NSVYLTRLGPVFEDLRGPPKYMLTQISGSNPLKQQDDRIIASDDENEDAEAPCIQKLFGI 826

Query: 559  LRIYFVFLESIRRVSLGILAGVFIHTRSQSSKSPIIIMLSITSFMLFFMVLKKPFIKKKV 618
            LRIY+ FLE+++RV LGI+AG F+   ++++K+PI+++LSITSF LFF++LKKPFIKKKV
Sbjct: 827  LRIYYTFLETVKRVCLGIIAGAFLD--NETAKTPIVVLLSITSFQLFFLLLKKPFIKKKV 884

Query: 619  QLVEIISLTCEVAFFATCFVLLKKDFSVRTETKFGIFMLVLFLVGYCSQIANEWYALYAQ 678
            QLVEIIS+ C+V  FA+C +LL KDF   +  K GIFM+VLFL+G+   + NEWY+LY Q
Sbjct: 885  QLVEIISIACQVGVFASCLMLLAKDFPEASGKKLGIFMVVLFLIGFIMLMCNEWYSLYKQ 944

Query: 679  TKLLDPEEKSLFRGLKVASIGFVLYFIPQKWIKN------LEKKLPQNGHANSETRDNAL 732
            TK LD   +S   GLK+  IG     +PQK IKN      LE +   NG    E R    
Sbjct: 945  TKRLDQINRSFLSGLKMFIIGLAALILPQKMIKNKIPVAQLEARSSSNGGTTPEFRYR-- 1002

Query: 733  IAERCMHSGSRSSGTPDIPWLKRVRELAKGSFSKDRSGVQI-TDPSTSSTTRWSGFWGNK 791
                   SGSRSSG+ D PWLK++RE+AK SF++DRS  ++ +DPS S +   S  WG K
Sbjct: 1003 -----NSSGSRSSGSLDKPWLKQIREMAKSSFTRDRSNSKVPSDPSCSKSGWSSSIWGTK 1057

Query: 792  RSGS----SSSDYKPKPKKALDEDLEAIFASK 819
             SGS    SS+DYK +P K L +DLEAIFASK
Sbjct: 1058 TSGSSSKESSADYKSRP-KGLYKDLEAIFASK 1088



 Score =  232 bits (591), Expect = 7e-61
 Identities = 115/190 (60%), Positives = 139/190 (72%)

Query: 24  GLLSVNACNLLVYGAGQVIPSSFKILKPNLMYSLLVSLSSTVQYSRAILVMDKNFCTDIA 83
           G  SVN+C+LLVYGAGQVIPSSF +L   L YSLLV LS   QY R +LVM+K+ C+DIA
Sbjct: 154 GCSSVNSCDLLVYGAGQVIPSSFTVLDQYLRYSLLVGLSPDAQYGRIVLVMNKSVCSDIA 213

Query: 84  GNSFTRMPNSSVYIHIDRRKVYVNIRTHVPEKLVQINSETRTVQATNDHNKLKVYLYFSA 143
           GN+F R   S  ++H DRR V VN+RTHVPEKL+++N++TRTVQATND+NKL VYLYFS 
Sbjct: 214 GNNFKRALGSRFFVHFDRRNVLVNLRTHVPEKLLKLNNQTRTVQATNDNNKLNVYLYFSE 273

Query: 144 PVLNSSTEIMNSLKVSQGSLLPTSAENLGNRRFGFMIANISSTAIISVNFNSKSIITRQG 203
           PVLNSS EI+  L  +QG LLP      GNRRF FM+ N S  AI++V  +S SI +R G
Sbjct: 274 PVLNSSAEILRRLNTNQGDLLPIDGNTNGNRRFAFMVTNTSRRAIVTVTLDSNSIRSRHG 333

Query: 204 TQVSPNAPFT 213
           T  SP AP T
Sbjct: 334 TPASPTAPLT 343


>At4g23460 beta adaptin - like protein
          Length = 893

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 20/104 (19%), Positives = 52/104 (49%), Gaps = 3/104 (2%)

Query: 103 KVYVNIRTHVPEKLVQINSETRTVQATNDHNKLKVYLYFSAPVLNSSTEIMNSLKVSQGS 162
           K+++   T  P++++Q+     TV+  N   + + Y+Y+   +L++  E    + +++  
Sbjct: 490 KLFLKKPTEGPQQMIQVVLNNATVETDNPDLRDRAYIYWR--LLSTDPEAAKDVVLAEKP 547

Query: 163 LLPTSAENLGNRRFGFMIANISSTAIISVNFNSKSIITRQGTQV 206
           ++   +  L       ++ANIS+ + +  +   ++ +TR  T V
Sbjct: 548 VITDDSNQLDPSLLDELLANISTLSSV-YHKPPEAFVTRLKTTV 590


>At4g26900 glutamine amidotransferase/cyclase
          Length = 592

 Score = 29.3 bits (64), Expect = 9.3
 Identities = 12/30 (40%), Positives = 20/30 (66%)

Query: 92  NSSVYIHIDRRKVYVNIRTHVPEKLVQINS 121
           N +V + ID R+VYVN    VP K++++ +
Sbjct: 439 NQAVVVSIDPRRVYVNHPDDVPYKVIRVTN 468


>At4g11380 beta-adaptin - like protein
          Length = 894

 Score = 29.3 bits (64), Expect = 9.3
 Identities = 19/104 (18%), Positives = 51/104 (48%), Gaps = 3/104 (2%)

Query: 103 KVYVNIRTHVPEKLVQINSETRTVQATNDHNKLKVYLYFSAPVLNSSTEIMNSLKVSQGS 162
           K+++   T  P++++Q+     TV+  N   + + Y+Y+   +L++  E    + +++  
Sbjct: 490 KLFLKKPTEGPQQMIQVVLNNATVETDNPDLRDRAYIYWR--LLSTDPEAAKDVVLAEKP 547

Query: 163 LLPTSAENLGNRRFGFMIANISSTAIISVNFNSKSIITRQGTQV 206
           ++   +  L       ++ NIS+ + +  +   ++ +TR  T V
Sbjct: 548 VISDDSNQLDPSLLDELLTNISTLSSV-YHKPPEAFVTRLKTTV 590


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.325    0.138    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,964,066
Number of Sequences: 26719
Number of extensions: 703021
Number of successful extensions: 2375
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2362
Number of HSP's gapped (non-prelim): 6
length of query: 819
length of database: 11,318,596
effective HSP length: 108
effective length of query: 711
effective length of database: 8,432,944
effective search space: 5995823184
effective search space used: 5995823184
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 64 (29.3 bits)