BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC124217.9 + phase: 0 /pseudo
         (145 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At5g04060 putative protein                                             30  0.58
At3g10200 unknown protein                                              27  2.9

>At5g04060 putative protein
          Length = 600

 Score = 29.6 bits (65), Expect = 0.58
 Identities = 15/53 (28%), Positives = 24/53 (44%), Gaps = 5/53 (9%)

Query: 4   DYRRLIRPEGWIIFPCPSWTRCLRG*RDKPFIAFWMGILGTTKLRCL*RIKRR 56
           +  RL+RP G+ ++  P   R     +DK F   W  ++  T   C   I R+
Sbjct: 300 EVNRLLRPNGYFVYSAPPAYR-----KDKDFPVIWDKLVNLTSAMCWKLISRK 347


>At3g10200 unknown protein
          Length = 591

 Score = 27.3 bits (59), Expect = 2.9
 Identities = 14/53 (26%), Positives = 24/53 (44%), Gaps = 5/53 (9%)

Query: 4   DYRRLIRPEGWIIFPCPSWTRCLRG*RDKPFIAFWMGILGTTKLRCL*RIKRR 56
           +  RL+RP G+ ++  P   R     +DK +   W  ++  T   C   I R+
Sbjct: 289 EVHRLLRPNGFFVYSSPPAYR-----KDKEYPMIWDKLVNLTSAMCWKLISRK 336


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.349    0.155    0.577 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,209,264
Number of Sequences: 26719
Number of extensions: 113956
Number of successful extensions: 363
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 361
Number of HSP's gapped (non-prelim): 3
length of query: 145
length of database: 11,318,596
effective HSP length: 90
effective length of query: 55
effective length of database: 8,913,886
effective search space: 490263730
effective search space used: 490263730
T: 11
A: 40
X1: 14 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.8 bits)
S2: 55 (25.8 bits)