BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC124217.5 + phase: 0 /pseudo
(1307 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g07550 putative retroelement pol polyprotein 388 e-107
At3g45520 copia-like polyprotein 377 e-104
At2g21460 putative retroelement pol polyprotein 372 e-102
At4g10460 putative retrotransposon 369 e-102
At5g35820 copia-like retrotransposable element 353 3e-97
At1g37110 352 8e-97
At2g13930 putative retroelement pol polyprotein 350 4e-96
At2g21310 putative retroelement pol polyprotein 345 7e-95
At4g21360 putative transposable element 330 4e-90
At1g47360 polyprotein, putative 294 3e-79
At3g60170 putative protein 208 1e-53
At4g04280 putative transposon protein 208 2e-53
At3g61330 copia-type polyprotein 201 3e-51
At1g48710 hypothetical protein 201 3e-51
At1g58140 hypothetical protein 200 4e-51
At4g04380 putative polyprotein 200 5e-51
At3g59720 copia-type reverse transcriptase-like protein 199 1e-50
At1g32590 hypothetical protein, 5' partial 191 2e-48
At2g19840 copia-like retroelement pol polyprotein 171 3e-42
At3g32340 hypothetical protein 166 8e-41
>At2g07550 putative retroelement pol polyprotein
Length = 1356
Score = 388 bits (996), Expect = e-107
Identities = 227/584 (38%), Positives = 342/584 (57%), Gaps = 40/584 (6%)
Query: 7 DIEKFTGSNDFGLWKVKMQAVLTQQKCVEALK-----GEAAMPATLTQEEKREMIDK--- 58
++EKF G D+ +WK K+ A + ALK GE + E+ E ++K
Sbjct: 7 EVEKFDGRGDYTMWKEKLLAHMDILGLNTALKESESTGEKKSVLDESDEDYEEKLEKFEA 66
Query: 59 -------AKSAIVLCLGDKVLRDVAREATAASM*AKLESLYMTKSLAHRQLLKQQLYSFK 111
A+SAIVL + D+VLR + +E+TAA+M L+ LYM+K+L +R KQ+LYSFK
Sbjct: 67 LEEKKKKARSAIVLSVTDRVLRKIKKESTAAAMLLALDKLYMSKALPNRIYPKQKLYSFK 126
Query: 112 MVESISISEQLTEFNKILVDLANIEVNTEDEDKALLLLCSLPKSFEHFKDTILYGK-EGT 170
M E++S+ + EF +I+ DL N+ V DED+A+LLL +LPK+F+ KDT+ Y +
Sbjct: 127 MSENLSVEGNIDEFLQIITDLENMNVIISDEDQAILLLTALPKAFDQLKDTLKYSSGKSI 186
Query: 171 TTLEEVQAALRTKEL---TKFKDLKVDEGSEGLNVARGRNEHRGKGKGKSRSKSRSKGFD 227
TL+EV AA+ +KEL + K +KV +EGL V + +NE++GKG+ K + K + KG
Sbjct: 187 LTLDEVAAAIYSKELELGSVKKSIKVQ--AEGLYV-KDKNENKGKGEQKGKGKGK-KGKS 242
Query: 228 KSKYKCFLCHKQGHFKKDCPD------------KGGDGSPSVQVAEASNEEGYESTGALV 275
K K C+ C ++GHF+ CP+ KG +AEA+ GY + AL
Sbjct: 243 KKKPGCWTCGEEGHFRSSCPNQNKPQFKQSQVVKGESSGGKGNLAEAA---GYYVSEALS 299
Query: 276 VTSWKSEKSWVLDSGCSYHMCPRKEYFETLTLKEGGVVRLGNNKACKVQGMGNVRLKMFD 335
T E W+LD+GCSYHM ++E+F GG VR+GN +V+G+G +R+K D
Sbjct: 300 STEVHLEDEWILDTGCSYHMTYKREWFHEFNEDAGGSVRMGNKTVSRVRGVGTIRVKNSD 359
Query: 336 GREFLLRDVRFVPELKRNLISLSMFDGLGYCTRIEHGVCKISHGALITVKGSKMNGLYIL 395
G +L +VR++P++ RNL+SL F+ GY E G+ +I G + + G + + LY+L
Sbjct: 360 GLTIVLTNVRYIPDMDRNLLSLGTFEKAGYKFESEDGILRIKAGNQVLLTGRRYDTLYLL 419
Query: 396 DGSIVIGNASVASVVPHNNSELWHLRLGHVSERGLVELAKQGLLGKDKLDKLEFCEHCIL 455
+ + + S+A V +++ LWH RL H+S++ + L ++G L K K+ L+ CE CI
Sbjct: 420 NWK-PVASESLAVVKRADDTVLWHQRLCHMSQKNMEILVRKGFLDKKKVSSLDVCEDCIY 478
Query: 456 GKQHRVKFGSGMHHSSRLFEYVHSDLLGPSKTP-THGGGSYFLSIIDDYSRRVWVFVLKK 514
GK R F H + EY+HSDL G P + G YF+SIIDD++R+VWV+ +K
Sbjct: 479 GKAKRKSFSLAHHDTKEKLEYIHSDLWGAPFVPLSLGKCQYFMSIIDDFTRKVWVYFMKT 538
Query: 515 KSDTF*KFKE*HTLIENQMGTKLKGLRTDNGLEFVSEQFNDFLQ 558
K + F KF E L+ENQ ++K LRTDNGLEF ++ F+ F +
Sbjct: 539 KDEAFEKFVEWVNLVENQTDRRVKTLRTDNGLEFCNKLFDGFCE 582
>At3g45520 copia-like polyprotein
Length = 1363
Score = 377 bits (968), Expect = e-104
Identities = 227/597 (38%), Positives = 342/597 (57%), Gaps = 51/597 (8%)
Query: 3 GSKWDIEKFTGSNDFGLWKVKMQAVLTQQKCVEALKGEAAMP---------ATLTQEEKR 53
G++ ++EKF G D+ +WK K+ A + L+ E+ P + ++E+R
Sbjct: 3 GARIEVEKFDGRGDYTMWKEKLLAHIDMLGLSAVLR-ESETPMGKERDSEKSDEDEKEER 61
Query: 54 EMID-------KAKSAIVLCLGDKVLRDVAREATAASM*AKLESLYMTKSLAHRQLLKQQ 106
E ++ KA+S IVL + D+VLR + +E +AA+M L+ LYM+K+L +R LKQ+
Sbjct: 62 EKMEAFEEKKRKARSTIVLSVSDRVLRKIKKETSAAAMLEALDRLYMSKALPNRIYLKQK 121
Query: 107 LYSFKMVESISISEQLTEFNKILVDLANIEVNTEDEDKALLLLCSLPKSFEHFKDTILYG 166
LYSFKM E++SI + EF I+ DL N+ V DED+A+LLL SLPK F+ KDT+ Y
Sbjct: 122 LYSFKMSENLSIEGNIDEFLHIVADLENLNVLVSDEDQAILLLMSLPKPFDQLKDTLKYS 181
Query: 167 KEGTT-TLEEVQAALRTKELTKFKDLK--VDEGSEGLNVA-----RGRNEHRGKGKGKSR 218
T +L+EV AA+ ++EL +F +K + +EGL V RGR+E + KGKGK R
Sbjct: 182 SGKTVLSLDEVAAAIYSREL-EFGSVKKSIKGQAEGLYVKDKAENRGRSEQKDKGKGK-R 239
Query: 219 SKSRSKGFDKSKYKCFLCHKQGHFKKDCPDK----------------GGDGSPSVQVAEA 262
SKS KSK C++C + GH K CP+K GG G+
Sbjct: 240 SKS------KSKRGCWICGEDGHLKSTCPNKNKPQFKNQGSNKGESSGGKGNLVEGSVNF 293
Query: 263 SNEEGYESTGALVVTSWKSEKSWVLDSGCSYHMCPRKEYFETLTLKEGGVVRLGNNKACK 322
G + AL T E W++D+GC YHM ++E+ E + GG VR+GN +
Sbjct: 294 VESAGMFVSEALSSTDIHLEDEWIMDTGCIYHMTHKREWLEDFDEEAGGSVRMGNKSISR 353
Query: 323 VQGMGNVRLKMFDGREFLLRDVRFVPELKRNLISLSMFDGLGYCTRIEHGVCKISHGALI 382
V+G+G VR+ +G L++VR++P++ RNL+SL F+ G+ E+G+ +I G +
Sbjct: 354 VKGVGTVRIVNDNGLTVTLQNVRYIPDMDRNLLSLGTFEKAGHKFESENGMLRIKSGNQV 413
Query: 383 TVKGSKMNGLYILDGSIVIGNASVASVVPHNNSELWHLRLGHVSERGLVELAKQGLLGKD 442
++G + + LYIL G + S+A ++++ LWH RL H+S++ + L K+G L K
Sbjct: 414 LLEGRRYDTLYILHGKPAT-DESLAVARANDDTVLWHRRLCHMSQKNMSLLIKKGFLDKK 472
Query: 443 KLDKLEFCEHCILGKQHRVKFGSGMHHSSRLFEYVHSDLLGPSKTP-THGGGSYFLSIID 501
K+ L+ CE CI G+ ++ F H + + EYVHSDL G P + G YF+S ID
Sbjct: 473 KVSMLDTCEDCIYGRAKKIGFNLAQHDTKKKLEYVHSDLWGAPTVPMSLGNCQYFISFID 532
Query: 502 DYSRRVWVFVLKKKSDTF*KFKE*HTLIENQMGTKLKGLRTDNGLEFVSEQFNDFLQ 558
DY+R+VWV+ LK K + F KF +L+ENQ G ++K LRTDNGLEF + F+ F +
Sbjct: 533 DYTRKVWVYFLKTKDEAFEKFVSWISLVENQSGERVKTLRTDNGLEFCNRMFDGFCE 589
>At2g21460 putative retroelement pol polyprotein
Length = 1333
Score = 372 bits (954), Expect = e-102
Identities = 229/573 (39%), Positives = 325/573 (55%), Gaps = 44/573 (7%)
Query: 7 DIEKFTGSNDFGLWKVKMQAVLTQQKCVEALKGEAAM-----PATLTQEEKREMI----- 56
++EKF G D+ +WK K+ A L ALK E + LT+EE++E +
Sbjct: 7 EVEKFDGRGDYTMWKEKLMAHLDILGLSVALKEEDDLVEKVAEMQLTEEEEKEEVLRREL 66
Query: 57 -----DKAKSAIVLCLGDKVLRDVAREATAASM*AKLESLYMTKSLAHRQLLKQQLYSFK 111
KA+SAIVL + D+VLR + +E +AA+M L+ LYM+K+L +R KQ+LYSFK
Sbjct: 67 LEEKRRKARSAIVLSVTDRVLRKIKKEQSAAAMLGVLDKLYMSKALPNRIYQKQKLYSFK 126
Query: 112 MVESISISEQLTEFNKILVDLANIEVNTEDEDKALLLLCSLPKSFEHFKDTILYG-KEGT 170
M E++SI + EF +I+ DL N V DED+A+LLL SLPK F+ +DT+ YG T
Sbjct: 127 MSENLSIEGNIDEFLRIIADLENTNVLVSDEDQAILLLMSLPKPFDQLRDTLKYGLGRVT 186
Query: 171 TTLEEVQAALRTKELTKFKDLKVDEG-SEGLNV-----ARGRNEHRGKGKGKSRSKSRSK 224
+L+EV AA+ +KEL + K +G +EGL V RGR E RG +S+S+S
Sbjct: 187 LSLDEVVAAIYSKELELGSNKKSIKGQAEGLFVKEKTETRGRTEQRGNNNNNKKSRSKS- 245
Query: 225 GFDKSKYKCFLCHKQGHFKKDCPDKGGDGSPSVQVAEASNEEGYESTGALVVTSWKSEKS 284
+SK C++C G S + S G + AL T E
Sbjct: 246 ---RSKKGCWIC----------------GESSNGSSNYSEANGLYVSEALSSTDIHLEDE 286
Query: 285 WVLDSGCSYHMCPRKEYFETLTLKEGGVVRLGNNKACKVQGMGNVRLKMFDGREFLLRDV 344
WV+D+GCSYHM ++E+FE L GG VR+GN KV+G+G +R+K G L +V
Sbjct: 287 WVMDTGCSYHMTYKREWFEDLNEDAGGSVRMGNKTVSKVRGIGTIRVKNEAGMVVRLTNV 346
Query: 345 RFVPELKRNLISLSMFDGLGYCTRIEHGVCKISHGALITVKGSKMNGLYILDGSIVIGNA 404
R++PE+ RNL+SL F+ GY ++E+G I G + + + LY+L V
Sbjct: 347 RYIPEMDRNLLSLGTFEKSGYSFKLENGTLSIIAGDSVLLTVRRCYTLYLLQWRPVT-EE 405
Query: 405 SVASVVPHNNSELWHLRLGHVSERGLVELAKQGLLGKDKLDKLEFCEHCILGKQHRVKFG 464
S++ V +++ LWH RLGH+S++ + L K+GLL K K+ KLE CE CI GK R+ F
Sbjct: 406 SLSVVKRQDDTILWHRRLGHMSQKNMDLLLKKGLLDKKKVSKLETCEDCIYGKAKRIGFN 465
Query: 465 SGMHHSSRLFEYVHSDLLGPSKTP-THGGGSYFLSIIDDYSRRVWVFVLKKKSDTF*KFK 523
H + EYVHSDL G P + G YF+S IDDY+R+V ++ LK K + F KF
Sbjct: 466 LAQHDTREKLEYVHSDLWGAPSVPFSLGKCQYFISFIDDYTRKVRIYFLKTKDEAFDKFV 525
Query: 524 E*HTLIENQMGTKLKGLRTDNGLEFVSEQFNDF 556
E L+ENQ ++K LRTDNGLEF + F++F
Sbjct: 526 EWANLVENQTDKRIKTLRTDNGLEFCNRSFDEF 558
>At4g10460 putative retrotransposon
Length = 1230
Score = 369 bits (947), Expect = e-102
Identities = 225/583 (38%), Positives = 321/583 (54%), Gaps = 58/583 (9%)
Query: 7 DIEKFTGSNDFGLWKVKMQAVLTQQKCVEALKGEAAMPATLTQEEK-------------R 53
++EKF G D+ LWK K+ A + AL+ ++ L EE+
Sbjct: 7 EMEKFDGHGDYTLWKEKLMAHMDLLGLTVALRETQSVSDPLESEEEGKESEKGDKEALME 66
Query: 54 EMIDKAKSAIVLCLGDKVLRDVAREATAASM*AKLESLYMTKSLAHRQLLKQQLYSFKMV 113
E KA+S IVL + D+VLR +E TA SM L+ LYM+K+L +R LKQ+LYS+KM
Sbjct: 67 EKRQKARSTIVLSVSDQVLRKSKKEKTAPSMLEALDKLYMSKALPNRIYLKQKLYSYKMQ 126
Query: 114 ESISISEQLTEFNKILVDLANIEVNTEDEDKALLLLCSLPKSFEHFKDTILYGKEGTT-T 172
E++S+ + EF +++ DL N V DED+A+LLL SLPK F+ KDT+ YG TT +
Sbjct: 127 ENLSVEGNIDEFLRLIADLENTNVLVSDEDQAILLLMSLPKQFDQLKDTLKYGSGRTTLS 186
Query: 173 LEEVQAALRTKELTKFKDLKVDEG-SEGLNV-----ARGRNEHRGKGKGKSRSKSRSKGF 226
++EV AA+ +KEL + K G +EGL V RG +E + KG K RS+SRSKG+
Sbjct: 187 VDEVVAAIYSKELELGSNKKSIRGQAEGLYVKDKPETRGMSEQKEKG-NKGRSRSRSKGW 245
Query: 227 DKSKYKCFLCHKQGHFKKDCPDKGGDGSPSVQVAEASNEE------------GYESTGAL 274
C++C ++GHFK CP+KG + A S E GY + AL
Sbjct: 246 K----GCWICGEEGHFKTSCPNKGKQQNKGKDQASGSKGEAATIKGNTSEGSGYYVSEAL 301
Query: 275 VVTSWKSEKSWVLDSGCSYHMCPRKEYFETLTLKEGGVVRLGNNKACKVQGMGNVRLKMF 334
T WV+D+GC+YHM +KE+FE L+ GG VR+GN K +
Sbjct: 302 HSTDVNLGNEWVMDTGCNYHMTHKKEWFEELSEDAGGTVRMGNKSTSKFR---------- 351
Query: 335 DGREFLLRDVRFVPELKRNLISLSMFDGLGYCTRIEHGVCKISHGALITVKGSKMNGLYI 394
V+++P++ RNL+S+ + GY ++GV + G + GS+ LY+
Sbjct: 352 ---------VKYIPDMDRNLLSMGTLEEHGYSFESKNGVLVVKEGTRTLLIGSRHEKLYL 402
Query: 395 LDGSIVIGNASVASVVPHNNSELWHLRLGHVSERGLVELAKQGLLGKDKLDKLEFCEHCI 454
L G + + S+ ++++ LWH RLGH+S++ + L K+G L K+ KLE CE CI
Sbjct: 403 LQGKPEVSH-SMTVERRNDDTVLWHRRLGHISQKNMDILVKKGYLDGKKVSKLELCEDCI 461
Query: 455 LGKQHRVKFGSGMHHSSRLFEYVHSDLLG-PSKTPTHGGGSYFLSIIDDYSRRVWVFVLK 513
GK R+ F H++ YVHSDL G PS + G YF+S ID YSR+ WV+ LK
Sbjct: 462 YGKARRLSFVVATHNTEDKLNYVHSDLWGAPSVPLSLGKCQYFISFIDVYSRKTWVYFLK 521
Query: 514 KKSDTF*KFKE*HTLIENQMGTKLKGLRTDNGLEFVSEQFNDF 556
K + F F E ++ENQ G K+K LR DNGLEF ++QFNDF
Sbjct: 522 HKDEAFGTFAEWSVMVENQTGRKIKILRIDNGLEFCNQQFNDF 564
>At5g35820 copia-like retrotransposable element
Length = 1342
Score = 353 bits (907), Expect = 3e-97
Identities = 219/586 (37%), Positives = 329/586 (55%), Gaps = 53/586 (9%)
Query: 7 DIEKFTGSNDFGLWKVKMQAVLTQQKCVEALKGEAAM----------------PATLTQ- 49
++EKF G D+ LWK K+ A + +E L E P T T
Sbjct: 7 EVEKFDGDGDYILWKEKLLAHMEMLGLLEGLGEEEEAVVEDSTTEISDGGNQDPETATSK 66
Query: 50 -EEK--REMIDKAKSAIVLCLGDKVLRDVAREATAASM*AKLESLYMTKSLAHRQLLKQQ 106
E+K +E KA+S I+L LG+ VLR V ++ TAA M L+ L+M KSL +R LKQ+
Sbjct: 67 LEDKILKEKRGKARSTIILSLGNNVLRKVIKQKTAAGMIKVLDQLFMAKSLPNRIYLKQR 126
Query: 107 LYSFKMVESISISEQLTEFNKILVDLANIEVNTEDEDKALLLLCSLPKSFEHFKDTILYG 166
LY +KM E++++ E + +F K++ DL N++V DED+A++LL SLP+ F+ K+T+ Y
Sbjct: 127 LYGYKMSENMTMEENVNDFFKLISDLENVKVVVPDEDQAIVLLMSLPRQFDQLKETLKYC 186
Query: 167 KEGTTTLEEVQAALRTKELTKFKDLK-VDEGSEGLNVA-RGRNEHRGKGKGKSRSKSRSK 224
K T LEE+ +A+R+K L K + S+GL V RGR+E RGKG K++S+S+SK
Sbjct: 187 KT-TLHLEEITSAIRSKILELGASGKLLKNNSDGLFVQDRGRSETRGKGPNKNKSRSKSK 245
Query: 225 GFDKSKYKCFLCHKQGHFKKDC---PDKGGDGSPSVQVAEASNEEGYESTGALVVT---- 277
G K+ C++C K+GHFKK C ++ GS S + ++ ALVV+
Sbjct: 246 GAGKT---CWICGKEGHFKKQCYVWKERNKQGSTSERGEASTVTARVTDAAALVVSRALL 302
Query: 278 --SWKSEKSWVLDSGCSYHMCPRKEYFETLTLKEGGVVRLGNNKACKVQGMGNVRLKMFD 335
+ + +W+LD+GCS+HM RK++ G VR+GN+ +V+G+G+VR+K D
Sbjct: 303 GFAEVTPDTWILDTGCSFHMTCRKDWIIDFKETASGKVRMGNDTYSEVKGIGDVRIKNED 362
Query: 336 GREFLLRDVRFVPELKRNLISLSMFDGLGYCTRIEHGVCKISHGALITVKGSKMNGLYIL 395
G LL DVR++PE+ +NLISL + G + G+ I L + G K + LY L
Sbjct: 363 GSTILLTDVRYIPEMSKNLISLGTLEDKGCWFESKKGILTIFKNDLTVLTGKKESTLYFL 422
Query: 396 DGSIVIGNASVASVVPHNNSELWHLRLGHVSERGLVELAKQGLLGKDKLDKLEFCEHCIL 455
G+ + G A+V + + LWH RLGH+ +GL L +G L K+ +
Sbjct: 423 QGTTLAGEANVID-KEKDETSLWHSRLGHIGAKGLQVLVSKGHLDKNIM----------- 470
Query: 456 GKQHRVKFGSGMHHSSRLFEYVHSDLLGPSKTP-THGGGSYFLSIIDDYSRRVWVFVLKK 514
+ FG+ H + +YVHSDL G + P + G YF++ IDD++RR W++ ++
Sbjct: 471 -----ISFGAAKHVTKDKLDYVHSDLWGSTNVPFSIGKCQYFITFIDDFTRRTWIYFIRT 525
Query: 515 KSDTF*KFKE*HTLIENQMGTKLKGLRTDNGLEFVSEQFNDFLQVE 560
K + F KF E T IENQ KLK L TDNGLEF +++F+ F + E
Sbjct: 526 KDEAFSKFVEWKTQIENQQDKKLKILITDNGLEFCNQEFDSFCRKE 571
>At1g37110
Length = 1356
Score = 352 bits (903), Expect = 8e-97
Identities = 216/592 (36%), Positives = 326/592 (54%), Gaps = 46/592 (7%)
Query: 7 DIEKFTGSNDFGLWKVKMQAVL------------TQQKCVEALKGEAAMPA--------- 45
+I+ F G DF LWK+++QA L + K V K EA +
Sbjct: 9 EIKVFNGDRDFSLWKIRIQAQLGVLGLKDTLTDFSLTKTVPLTKSEAKQESGDGESSGTK 68
Query: 46 TLTQEEKREMIDKAKSAIVLCLGDKVLRDVAREATAASM*AKLESLYMTKSLAHRQLLKQ 105
+ K E ++AK+ I+ + D VL V AT A + A L YM SL +R +
Sbjct: 69 EVPDPVKIEQSEQAKNIIINHISDVVLLKVNHYATTADLWATLNKKYMETSLPNRIYTQL 128
Query: 106 QLYSFKMVESISISEQLTEFNKILVDLANIEVNTEDEDKALLLLCSLPKSFEHFKDTILY 165
+LYSFKMV +++I + + EF +I+ +L ++E+ ++E +A+L+L SLP S K T+ Y
Sbjct: 129 KLYSFKMVSTMTIDQNVDEFLRIVAELGSLEIQVDEEVQAILILNSLPASHIQLKHTLKY 188
Query: 166 GKEGTTTLEEVQAALRT--KELTKFKDLKVDEGSEGLNVARGR-----NEHRGKGKGKSR 218
G + T T+++V ++ ++ +EL + DL + + RGR N+ G+GKG+SR
Sbjct: 189 GNK-TLTVQDVTSSAKSLERELAEAVDLDKGQAAVLYTTERGRPLVRNNQKGGQGKGRSR 247
Query: 219 SKSRSKGFDKSKYKCFLCHKQGHFKKDCPDKGGDGSPSVQVAEASNEEGYESTGALVVTS 278
S S K+K C+ C K+GH KKDC + Q E + AL V
Sbjct: 248 SNS------KTKVPCWYCKKEGHVKKDCYSRKKKMESEGQGEAGVITEKLVFSEALSVNE 301
Query: 279 WKSEKSWVLDSGCSYHMCPRKEYFETLTLKEGGVVRLGNNKACKVQGMGNVRLKMFDGRE 338
+ W+LDSGC+ HM R+++F + K + LG++ + + QG G +R+ G
Sbjct: 302 QMVKDLWILDSGCTSHMTSRRDWFISFQEKGNTTILLGDDHSVESQGQGTIRIDTHGGTI 361
Query: 339 FLLRDVRFVPELKRNLISLSMFDGLGYCTRIEHGVCKISHGALITVKGSKMNGLYILDGS 398
+L +V++VP L+RNLIS D LGY G + ++GS NGLY+LDGS
Sbjct: 362 KILENVKYVPHLRRNLISTGTLDKLGYRHEGGEGKVRYFKNNKTALRGSLSNGLYVLDGS 421
Query: 399 IVIG---NASVASVVPHNNSELWHLRLGHVSERGLVELAKQGLLGKDKLDKLEFCEHCIL 455
V+ NA V + LWH RLGH+S L LA +GL+ + ++++LEFCEHC++
Sbjct: 422 TVMSELCNAETDKV----KTALWHSRLGHMSMNNLKVLAGKGLIDRKEINELEFCEHCVM 477
Query: 456 GKQHRVKFGSGMHHSSRLFEYVHSDLLG-PSKTPTHGGGSYFLSIIDDYSRRVWVFVLKK 514
GK +V F G H S YVH+DL G P+ TP+ G YFLSIIDD +R+VW++ LK
Sbjct: 478 GKSKKVSFNVGKHTSEDALSYVHADLWGSPNVTPSISGKQYFLSIIDDKTRKVWLYFLKS 537
Query: 515 KSDTF*KFKE*HTLIENQMGTKLKGLRTDNGLEFVSEQFNDFLQ---VERNQ 563
K +TF KF E +L+ENQ+ K+K LRTDNGLEF + +F+ + + +ER++
Sbjct: 538 KDETFDKFCEWKSLVENQVNKKVKCLRTDNGLEFCNSRFDSYCKEHGIERHR 589
>At2g13930 putative retroelement pol polyprotein
Length = 1335
Score = 350 bits (897), Expect = 4e-96
Identities = 200/523 (38%), Positives = 296/523 (56%), Gaps = 22/523 (4%)
Query: 54 EMIDKAKSAIVLCLGDKVLRDVAREATAASM*AKLESLYMTKSLAHRQLLKQQLYSFKMV 113
E DKAK+ I L + DKVLR + TAA L+ L+M +SL HR + Y+FKM
Sbjct: 44 ERCDKAKNVIFLNVADKVLRKIELCKTAAEAWETLDRLFMIRSLPHRVYTQLSFYTFKMQ 103
Query: 114 ESISISEQLTEFNKILVDLANIEVNTEDEDKALLLLCSLPKSFEHFKDTILYGKEGTTT- 172
E+ I E + +F KI+ DL +++++ DE +A+LLL SLP ++ +T+ Y
Sbjct: 104 ENKKIDENIDDFLKIVADLNHLQIDVTDEVQAILLLSSLPARYDGLVETMKYSNSREKLR 163
Query: 173 LEEVQAALRTKELTKFKDLK-VDEGSEGLNVARGRNEHRG-KGKGKSRSKSRSKGFDKSK 230
L++V A R KE ++ + V EG G+N ++G KGK +SRSKS K
Sbjct: 164 LDDVMVAARDKERELSQNNRPVVEGHFARGRPDGKNNNQGNKGKNRSRSKSAD-----GK 218
Query: 231 YKCFLCHKQGHFKKDC------PDKGGDGSPSVQVAEASNEEGYE------STGALVVTS 278
C++C K+GHFKK C GS + + + A + E + +T +V +
Sbjct: 219 RVCWICGKEGHFKKQCYKWIERNKSKQQGSDNGESSLAKSTEAFNPAMVLLATDETLVVT 278
Query: 279 WKSEKSWVLDSGCSYHMCPRKEYFETLTLKEGGVVRLGNNKACKVQGMGNVRLKMFDGRE 338
WVLD+GCS+HM PRK++F+ G V++GN+ V+G+G+++++ DG +
Sbjct: 279 DSIANEWVLDTGCSFHMTPRKDWFKDFKELSSGYVKMGNDTYSPVKGIGSIKIRNSDGSQ 338
Query: 339 FLLRDVRFVPELKRNLISLSMFDGLGYCTRIEHGVCKISHGALITVKGSKMNGLYILDGS 398
+L DVR++P + RNLISL + G + + G+ KI G +KG K + LYILDG
Sbjct: 339 VILTDVRYMPNMTRNLISLGTLEDRGCWFKSQDGILKIVKGCSTILKGQKRDTLYILDGV 398
Query: 399 IVIGNASVASVVPHNNSELWHLRLGHVSERGLVELAKQGLLGKDKLDKLEFCEHCILGKQ 458
G S +S + + LWH RLGH+S++G+ L K+G L ++ + +LEFCE C+ GKQ
Sbjct: 399 TEEGE-SHSSAEVKDETALWHSRLGHMSQKGMEILVKKGCLRREVIKELEFCEDCVYGKQ 457
Query: 459 HRVKFGSGMHHSSRLFEYVHSDLLGPSKTPTH-GGGSYFLSIIDDYSRRVWVFVLKKKSD 517
HRV F H + YVHSDL G P G YF+S +DDYSR+VW++ L+KK +
Sbjct: 458 HRVSFAPAQHVTKEKLAYVHSDLWGSPHNPASLGNSQYFISFVDDYSRKVWIYFLRKKDE 517
Query: 518 TF*KFKE*HTLIENQMGTKLKGLRTDNGLEFVSEQFNDFLQVE 560
F KF E ++ENQ K+K LRTDNGLE+ + F F + E
Sbjct: 518 AFEKFVEWKKMVENQSDRKVKKLRTDNGLEYCNHYFEKFCKEE 560
>At2g21310 putative retroelement pol polyprotein
Length = 838
Score = 345 bits (886), Expect = 7e-95
Identities = 199/525 (37%), Positives = 310/525 (58%), Gaps = 30/525 (5%)
Query: 7 DIEKFTGSNDFGLWKVKMQAV---------LTQQKCVEALKGEAAMPATLTQEEKR---E 54
++EK G D+ LWK K+ A L + + +E + A + LT+ E + E
Sbjct: 7 EVEKLDGEGDYVLWKEKLLAHIELLGLLEGLEEDEAIEEEESTAETDSLLTKTEDKVLKE 66
Query: 55 MIDKAKSAIVLCLGDKVLRDVAREATAASM*AKLESLYMTKSLAHRQLLKQQLYSFKMVE 114
KA+S ++L LG+ VLR V +E TAA M L+ L+M KSL +R LKQ+LY +KM +
Sbjct: 67 KRGKARSTVILSLGNHVLRKVIKEKTAAGMIRVLDKLFMAKSLPNRIYLKQRLYGYKMSD 126
Query: 115 SISISEQLTEFNKILVDLANIEVNTEDEDKALLLLCSLPKSFEHFKDTILYGKEGTTTLE 174
S++I E + +F K++ DL N++V+ DED+A++LL SLPK F+ KDT+ YGK T L+
Sbjct: 127 SMTIEENVNDFFKLISDLENVKVSVPDEDQAIVLLMSLPKQFDQLKDTLKYGKT-TLALD 185
Query: 175 EVQAALRTKELTKFKDLK-VDEGSEGLNVA-RGRNEHRGKGKGKSRSKSRSKGFDKSKYK 232
E+ A+R+K L K + S+ L V RGR+E R K +++S+SRSK + K
Sbjct: 186 EITGAIRSKVLELGASGKMLKNSSDALFVQDRGRSEKRDKSSERNKSQSRSK--SREKKV 243
Query: 233 CFLCHKQGHFKKDC---PDKGGDGSPSVQVAEASNEEGYESTGALVVTSWKS-------E 282
C++C K+GHFKK C +K G+ S + E+SN G + A + +S +
Sbjct: 244 CWVCGKEGHFKKQCYVWKEKNKKGNNS-EKGESSNVIGQAADAAALAVREESNADNQEVD 302
Query: 283 KSWVLDSGCSYHMCPRKEYFETLTLKEGGVVRLGNNKACKVQGMGNVRLKMFDGREFLLR 342
W++D+GCS+HM PR+++F + G V++ N +++G+G++R++ D LL+
Sbjct: 303 NEWIMDTGCSFHMTPRRDWFVEFDESQTGRVKMANQTYSEIKGIGSIRIQNDDNTTVLLK 362
Query: 343 DVRFVPELKRNLISLSMFDGLGYCTRIEHGVCKISHGALITVKGSKMNGLYILDGSIVIG 402
+VR+VP + +NLIS+ + G + + G K+ G + +KG K+ LY+L G +V G
Sbjct: 363 NVRYVPSMSKNLISMGTLEDQGCWFQSKAGTLKVVKGCMTLLKGKKVGTLYLLQGVVVTG 422
Query: 403 NASVASVVPHNNSELWHLRLGHVSERGLVELAKQGLLGKDKLDKLEFCEHCILGKQHRVK 462
NA+ A + S++WH RL H+S+R + L K+G L +K++ LEFCE C+ GK HRV
Sbjct: 423 NAN-AVTSSKDESKIWHSRLCHMSQRNIDVLIKKGCLQAEKINGLEFCEDCVYGKTHRVG 481
Query: 463 FGSGMHHSSRLFEYVHSDLLG-PSKTPTHGGGSYFLSIIDDYSRR 506
FGS H + EY+HSDL G PS + G YF++ IDD +R+
Sbjct: 482 FGSAKHVTREKLEYIHSDLWGAPSVPNSLGNCQYFITFIDDLTRK 526
>At4g21360 putative transposable element
Length = 1308
Score = 330 bits (845), Expect = 4e-90
Identities = 211/602 (35%), Positives = 328/602 (54%), Gaps = 64/602 (10%)
Query: 2 MGSKWDIEKFTGSNDFGLWKVKMQAVL------------TQQKCVEALKGEAAMPATLTQ 49
M +K +I+ F G DF LWK++++A L T K + +K E +
Sbjct: 3 MSTKVEIKTFNGDRDFSLWKIRIEAQLGVLGLKPALSDFTLTKTILVVKSEKKESESEDD 62
Query: 50 EE------------KREMIDKAKSAIVLCLGDKVLRDVAREATAASM*AKLESLYMTKSL 97
E K E D+AK+ I+ + D VL V TAA + A L L+M SL
Sbjct: 63 ETDSKKTEEVPDPIKFEQSDQAKNFIINHITDTVLLKVQHCVTAAELWATLNKLFMETSL 122
Query: 98 AHRQLLKQQLYSFKMVESISISEQLTEFNKILVDLANIEVNTEDEDKALLLLCSLPKSFE 157
+R + +LYSFKMV+++SI + EF +I+ +L ++++ +E +A+L+L SLP S+
Sbjct: 123 PNRIYTQLRLYSFKMVDNLSIDQNTDEFLRIVAELGSLQIQVGEEVQAILILNSLPPSYI 182
Query: 158 HFKDTILYGKEGTTTLEEVQAALRT--KELTKFKDLKVDEGSEGLNVA-RGRNEHR---G 211
K T+ YG + T ++++V ++ ++ +EL++ K+ S L A RGR + + G
Sbjct: 183 QLKHTLKYGNK-TLSVQDVVSSAKSLERELSEQKETIRAPASTALYTAERGRPQTKNTQG 241
Query: 212 KGKGKSRSKSRSKGFDKSKYKCFLCHKQGHFKKDC------PDKGGDGSPSVQVAEASNE 265
+GKG+ RS S KS+ C+ C K+GH KKDC + G G V +
Sbjct: 242 QGKGRGRSNS------KSRLTCWFCKKEGHVKKDCYAGKRKLENEGQGKAGVITEKLVYS 295
Query: 266 EGYESTGALVVTSWKSEKSWVLDSGCSYHMCPRKEYFETLTLKEGGVVRLGNNKACKVQG 325
E AL + +++ WV+DSGC+YHM R ++F E ++ LG++ + +G
Sbjct: 296 E------ALSMYDQEAKDKWVIDSGCTYHMTSRMDWFSEFNENETTMILLGDDHTVESKG 349
Query: 326 MGNVRLKMFDGREFLLRDVRFVPELKRNLISLSMFDGLGYCTRIEHGVCKISHGALITVK 385
G V++ G +L++VRFVP L+RNLIS D LGY G + +
Sbjct: 350 SGTVKVNTHGGSIRVLKNVRFVPNLRRNLISTGTLDKLGYKHEGGDGKVRFYKENKTALC 409
Query: 386 GSKMNGLYILDGSIVIG-NASVASVVPHNNSELWHLRLGHVSERGLVELAKQGLLGKDKL 444
G+ +NGLY+LDG V+ N +V + +ELWH RLGH+S + LA++GLL K +
Sbjct: 410 GNLVNGLYVLDGHTVVNENCNVEG--SNEKTELWHCRLGHMSLNNMKILAEKGLLEKKDI 467
Query: 445 DKLEFCEHCILGKQHRVKFGSGMHHSSRLFEYVHSDLLGPSKTPTHGGGSYFLSIIDDYS 504
+L FCE+C++GK ++ F G H + + Y+H+DL G YFLSIIDD S
Sbjct: 468 KELSFCENCVMGKSKKLSFNVGKHITDEVLGYIHADLWGK---------QYFLSIIDDKS 518
Query: 505 RRVWVFVLKKKSDTF*KFKE*HTLIENQMGTKLKGLRTDNGLEFVSEQFNDFLQ---VER 561
R+VW+ LK K +TF +F E L+ENQ+ K+K LRTDNGLEF + +F++F + +ER
Sbjct: 519 RKVWLMFLKTKDETFERFCEWKELVENQVNKKVKILRTDNGLEFCNLKFDEFCKQNGIER 578
Query: 562 NQ 563
++
Sbjct: 579 HR 580
>At1g47360 polyprotein, putative
Length = 1182
Score = 294 bits (752), Expect = 3e-79
Identities = 187/569 (32%), Positives = 282/569 (48%), Gaps = 69/569 (12%)
Query: 8 IEKFTGSNDFGLWKVKMQAVLTQQKCVEALKGEAAMPATLTQEEKREMIDKAKSAIVLCL 67
I F S DF LWK ++ A L+ + + G+ P T +EE E I LC
Sbjct: 6 IAVFDESGDFSLWKTRIMAHLSVIGLKDVVIGKTITPLTAEEEEDPE------KKIELC- 58
Query: 68 GDKVLRDVAREATAASM*AKLESLYMTKSLAHRQLLKQQLYSFKMVESISISEQLTEFNK 127
TA L+ L+M +SL HR + Y+FKM E+ I E + +F K
Sbjct: 59 -----------QTAQEAWETLDRLFMIRSLPHRVYTQLSFYTFKMQENKKIDENIDDFLK 107
Query: 128 ILVDLANIEVNTEDEDKALLLLCSLPKSFEHFKDTILYGKEGTTT-LEEVQAALRTKELT 186
I+ DL ++++ DE +A+LLL SLP ++ +T+ Y L++V R KE
Sbjct: 108 IVADLNHLQIEVTDEVQAILLLSSLPARYDGLVETMKYSNSREKLRLDDVMVGARDKERE 167
Query: 187 KFKDLK-VDEGSEGLNVARGRNEHRG-KGKGKSRSKSRSKGFDKSKYKCFLCHKQGHFKK 244
++ + V EG G+N ++G KGK +SRSKS K C++C K+GHFKK
Sbjct: 168 LSQNNRPVAEGHYARGRPEGKNNNQGNKGKNRSRSKSAD-----GKRVCWICGKEGHFKK 222
Query: 245 DCP---DKGGDGSPSVQVAEASNEEGYE---------STGALVVTSWKSEKSWVLDSGCS 292
C ++ V E+S + E +TG ++ + + W LD+GCS
Sbjct: 223 QCYKWLERNKSKQQGSDVGESSLAKSSEIFDPAMVIMATGETLLVTGRDADEWFLDTGCS 282
Query: 293 YHMCPRKEYFETLTLKEGGVVRLGNNKACKVQGMGNVRLKMFDGREFLLRDVRFVPELKR 352
+HM PR++ F+ G V++GN+ V+G+G+++++ DG + +L DVR+VP + R
Sbjct: 283 FHMTPRRDLFKDFKELSSGFVKMGNDTYSPVKGIGSIKIRNNDGTQVILTDVRYVPNMAR 342
Query: 353 NLISLSMFDGLGYCTRIEHGVCKISHGALITVKGSKMNGLYILDGSIVIGNASVASVVPH 412
NLISL + G + + GV KI G +KG K LYIL+G + S +S
Sbjct: 343 NLISLGTLEDKGCWFKSQDGVLKIVKGCSTILKGQKRETLYILEG-LAENGESHSSAELK 401
Query: 413 NNSELWHLRLGHVSERGLVELAKQGLLGKDKLDKLEFCEHCILGKQHRVKFGSGMHHSSR 472
+ + LWH RLGH+S++G+ L K+ L ++ + +L+FCE C+ GK HRV F H +
Sbjct: 402 DETSLWHSRLGHMSQKGMEILVKKDCLQRETIKELKFCEDCVYGKNHRVSFAPAQHVTKE 461
Query: 473 LFEYVHSDLLGPSKTPTH-GGGSYFLSIIDDYSRRVWVFVLKKKSDTF*KFKE*HTLIEN 531
Y+HSDL G P G YF+S +DDYSR+
Sbjct: 462 KLAYIHSDLWGSPHNPASLGNCQYFISFVDDYSRK------------------------- 496
Query: 532 QMGTKLKGLRTDNGLEFVSEQFNDFLQVE 560
K+K LRTDNGLE+ + F F + E
Sbjct: 497 ----KVKKLRTDNGLEYCNHYFEKFCKDE 521
>At3g60170 putative protein
Length = 1339
Score = 208 bits (530), Expect = 1e-53
Identities = 164/579 (28%), Positives = 275/579 (47%), Gaps = 43/579 (7%)
Query: 8 IEKFTGSNDFGLWKVKMQAVLTQQKCVEALKGEAAMPA-----TLTQEEKREMIDKAK-- 60
I +F G DF W + M+ L ++ + E +PA T E +R +++AK
Sbjct: 12 IPRFDGYYDF--WSMTMENFLRSRELWRLV--EEGIPAIVVGTTPVSEAQRSAVEEAKLK 67
Query: 61 -----SAIVLCLGDKVLRDVAREATAASM*AKLESLYMTKSLAHRQLLKQQLYSFKMVES 115
+ + + ++L + ++T+ ++ ++ Y + R L+ F+++
Sbjct: 68 DLKVKNFLFQAIDREILETILDKSTSKAIWESMKKKYQGSTKVKRAQLQALRKEFELLAM 127
Query: 116 ISISEQLTEFNKILVDLANIEVNTEDEDKALL---LLCSLPKSFEHFKDTILYGKE-GTT 171
+ T + L + ++ N E +++ + +L SL F + +I + T
Sbjct: 128 KEGEKIDTFLGRTLTVVNKMKTNGEVMEQSTIVSKILRSLTPKFNYVVCSIEESNDLSTL 187
Query: 172 TLEEVQAALRTKE------LTKFKDLKVDEGSEGLNVARGRNEHRG-KGKGKSRSKSRSK 224
+++E+ +L E + + + LKV E + RGR RG +G+G+ R +S
Sbjct: 188 SIDELHGSLLVHEQRLNGHVQEEQALKVTH-EERPSQGRGRGVFRGSRGRGRGRGRS--- 243
Query: 225 GFDKSKYKCFLCHKQGHFKKDCPDKGGDGSPSVQVAEASNEEGYESTGALVVTSWKSEKS 284
G +++ +C+ CH GHF+ +CP+ + AE EE + ++
Sbjct: 244 GTNRAIVECYKCHNLGHFQYECPE----WEKNANYAELEEEEELLLMAYVEQNQANRDEV 299
Query: 285 WVLDSGCSYHMCPRKEYFETLTLKEGGVVRLGNNKACKVQGMGNVRLKMFDGREFLLRDV 344
W LDSGCS HM KE+F L V+LGN+ V G G+V++K+ +G ++ +V
Sbjct: 300 WFLDSGCSNHMTGSKEWFSELEEGFNRTVKLGNDTRMSVVGKGSVKVKV-NGVTQVIPEV 358
Query: 345 RFVPELKRNLISLSMFDGLGYCTRIEHGVCKISHGALITVKGSKMNG--LYILDGSIVIG 402
+VPEL+ NL+SL G I G CK+ H + + + M+G ++ L S
Sbjct: 359 YYVPELRNNLLSLGQLQERGLAILIRDGTCKVYHPSKGAIMETNMSGNRMFFLLASKPQK 418
Query: 403 NASVASV--VPHNNSELWHLRLGHVSERGLVELA-KQGLLGKDKLDKL-EFCEHCILGKQ 458
N+ V + LWH R GH+++ GL LA K+ ++G L E C C+ GKQ
Sbjct: 419 NSLCLQTEEVMDKENHLWHCRFGHLNQEGLKLLAHKKMVIGLPILKATKEICAICLTGKQ 478
Query: 459 HRVKFGSGMH-HSSRLFEYVHSDLLGPSKTPTHGGGSYFLSIIDDYSRRVWVFVLKKKSD 517
HR SS + VHSD+ GP +H G Y LS IDD++R+ WV+ L +KS+
Sbjct: 479 HRESMSKKTSWKSSTQLQLVHSDICGPITPISHSGKRYILSFIDDFTRKTWVYFLHEKSE 538
Query: 518 TF*KFKE*HTLIENQMGTKLKGLRTDNGLEFVSEQFNDF 556
F FK +E ++G L LRTD G EF S +F +F
Sbjct: 539 AFATFKIFKASVEKEIGAFLTCLRTDRGGEFTSNEFGEF 577
>At4g04280 putative transposon protein
Length = 1104
Score = 208 bits (529), Expect = 2e-53
Identities = 166/578 (28%), Positives = 258/578 (43%), Gaps = 121/578 (20%)
Query: 5 KWDIEKFTGSNDFGLWKVKMQA---VLTQQKCVEALKGEAAMPATLTQEEKREMID---- 57
K +I+ F G DF WK++++A VL + + K +P +E++ E D
Sbjct: 2 KVEIKTFNGDRDFSFWKIRIEAQLGVLGLKNSLTDFKLTKTVPVAKKEEKESEYEDDASD 61
Query: 58 -----------------KAKSAIVLCLGDKVLRDVAREATAASM*AKLESLYMTKSLAHR 100
+AK+ I+ + D VL V TAA + A L L+M SL +R
Sbjct: 62 IKQATEEPDPIKFEQSEQAKNFIINHITDTVLLKVQHCKTAAEIWATLNKLFMETSLLNR 121
Query: 101 QLLKQQLYSFKMVESISISEQLTEFNKILVDLANIEVNTEDEDKALLLLCSLPKSFEHFK 160
+ +LYSFKMV+++SI + + EF +IL D + + LP S+ K
Sbjct: 122 IYTQLKLYSFKMVDTLSIDQNVDEFLRILADCLDQNL--------------LPSSYIQLK 167
Query: 161 DTILYGKEGTTTLEEVQAAL-RTKELTKFKDLKVDEGSEGLNVARGRNEHRGKGKGKSRS 219
T+ + ++ + ++ L T+E K + + G R +++ +G+GK + RS
Sbjct: 168 HTL--NTDVVSSAKSLERKLSETQESNKNVSMALYTTDRGRPQVRNQDK-QGQGKNRGRS 224
Query: 220 KSRSKGFDKSKYKCFLCHKQGHFKKDCPDKGGDGSPSVQVAEASNEEGYESTGALVVTSW 279
S+++ VT W
Sbjct: 225 NSKTR---------------------------------------------------VTCW 233
Query: 280 KSEKSWVLDSGCSYHMCPRKEYFETLTLKEGGVVRLGNNKACKVQGMGNVRLKMFDGREF 339
+K + C RK+ E ++ LG++ + +G G ++L G
Sbjct: 234 FCKKEAHVKRDCF----ARKKKLENEN--RATMILLGDDHTVESRGCGTIKLNTHGGLIR 287
Query: 340 LLRDVRFVPELKRNLISLSMFDGLGYCTRIEHGVCKISHGALITVKGSKMNGLYILDGSI 399
+L++VR+VP L+RNLIS LGY G + + G MNGLYILDG
Sbjct: 288 MLKNVRYVPNLRRNLISTGTLHSLGYKHEGGEGKLRFYKNGKTALCGYLMNGLYILDGHT 347
Query: 400 VIGNASVASVVPHNNSELWHLRLGHVSERGLVELAKQGLLGKDKLDKLEFCEHCILGKQH 459
V A N+++L L+ K + L+FCEH ++GK
Sbjct: 348 VATETCNAESAK-NSTKL--------------------LIEKKEFKDLDFCEHYVMGKSK 386
Query: 460 RVKFGSGMHHSSRLFEYVHSDLLG-PSKTPTHGGGSYFLSIIDDYSRRVWVFVLKKKSDT 518
++ F G H + + YVH+DL G P+ TP+ G YFLSIIDD SR+VW+ LK K +T
Sbjct: 387 KLSFNVGKHVTEDILGYVHADLWGSPNVTPSISGKQYFLSIIDDKSRKVWLMFLKSKDET 446
Query: 519 F*KFKE*HTLIENQMGTKLKGLRTDNGLEFVSEQFNDF 556
F KF E ++EN +G K+K LRTDNGLEF + +FND+
Sbjct: 447 FDKFCEWKEIVENHVGKKVKTLRTDNGLEFCNNRFNDY 484
>At3g61330 copia-type polyprotein
Length = 1352
Score = 201 bits (510), Expect = 3e-51
Identities = 171/604 (28%), Positives = 281/604 (46%), Gaps = 78/604 (12%)
Query: 15 NDFGLWKVKMQAVLTQQKCVEAL-KG--EAAMPATLTQEEKREMID------KAKSAIVL 65
+++ W ++M+A+L E + KG E +L+Q +K + D KA I
Sbjct: 16 SNYDNWSLRMKAILGAHDVWEIVEKGFIEPENEGSLSQTQKDGLRDSRKRDKKALCLIYQ 75
Query: 66 CLGDKVLRDVAREATAASM*AKLESLYMTKSLAHR---QLLKQQLYSFKMVESISISEQL 122
L + V +A KL + Y + Q L+ + + +M E +S+
Sbjct: 76 GLDEDTFEKVVEATSAKEAWEKLRTSYKGADQVKKVRLQTLRGEFEALQMKEGELVSDY- 134
Query: 123 TEFNKILVDLANIEVNTEDEDKALLL---LCSLPKSFEHFKDTILYGKE-GTTTLEEVQA 178
F+++L N++ N E D ++ L SL FEH I K+ T+E++
Sbjct: 135 --FSRVLTVTNNLKRNGEKLDDVRIMEKVLRSLDLKFEHIVTVIEETKDLEAMTIEQLLG 192
Query: 179 ALRTKELTKFKDLKVDEGSEGLNVA------------RGRNEHRGKGKG----------- 215
+L+ E K K K D + LN+ RG + RG+G+G
Sbjct: 193 SLQAYEEKKKK--KEDIAEQVLNMQITKEENGQSYQRRGGGQVRGRGRGGYGNGRGWRPH 250
Query: 216 --------KSRSKSRSKGFDKSKY-----KCFLCHKQGHFKKDCPDKGGDGSPSVQVAEA 262
++ S+ R KG KS+Y KC+ C K GH+ +C +PS + E
Sbjct: 251 EDNTNQRGENSSRGRGKGHPKSRYDKSSVKCYNCGKFGHYASECK------APSNKKFEE 304
Query: 263 SN---EEGYESTGALVVTSWKSEK-----SWVLDSGCSYHMCPRKEYFETLTLKEGGVVR 314
EE + L++ S+K ++ W LDSG S HMC RK F L G V
Sbjct: 305 KAHYVEEKIQEEDMLLMASYKKDEQKENHKWYLDSGASNHMCGRKSMFAELDESVRGNVA 364
Query: 315 LGNNKACKVQGMGNVRLKMFDGREFLLRDVRFVPELKRNLISLSMFDGLGYCTRIEHGVC 374
LG+ +V+G GN+ +++ +G + +V ++P +K N++SL GY R++
Sbjct: 365 LGDESKMEVKGKGNILIRLKNGDHQFISNVYYIPSMKTNILSLGQLLEKGYDIRLKDNNL 424
Query: 375 KI--SHGALITVKGSKMNGLYILDGSIVIGNASVASVVPHNNSELWHLRLGHVSERGLVE 432
I LIT N +++L +I A + S LWHLR GH++ GL
Sbjct: 425 SIRDQESNLITKVPMSKNRMFVL--NIRNDIAQCLKMCYKEESWLWHLRFGHLNFGGLEL 482
Query: 433 LAKQGLL-GKDKLD-KLEFCEHCILGKQHRVKF-GSGMHHSSRLFEYVHSDLLGPSKTPT 489
L+++ ++ G ++ + CE C+LGKQ ++ F + + E +H+D+ GP K +
Sbjct: 483 LSRKEMVRGLPCINHPNQVCEGCLLGKQFKMSFPKESSSRAQKPLELIHTDVCGPIKPKS 542
Query: 490 HGGGSYFLSIIDDYSRRVWVFVLKKKSDTF*KFKE*HTLIENQMGTKLKGLRTDNGLEFV 549
G +YFL IDD+SR+ WV+ LK+KS+ F FK+ +E + G +K +R+D G EF
Sbjct: 543 LGKSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKKFKAHVEKESGLVIKTMRSDRGGEFT 602
Query: 550 SEQF 553
S++F
Sbjct: 603 SKEF 606
>At1g48710 hypothetical protein
Length = 1352
Score = 201 bits (510), Expect = 3e-51
Identities = 167/601 (27%), Positives = 279/601 (45%), Gaps = 72/601 (11%)
Query: 15 NDFGLWKVKMQAVLTQQKCVEAL-KG--EAAMPATLTQEEKREMID------KAKSAIVL 65
+++ W ++M+A+L E + KG E +L+Q +K + D KA I
Sbjct: 16 SNYDNWSLRMKAILGAHDVWEIVEKGFIEPENEGSLSQTQKDGLRDSRKRDKKALCLIYQ 75
Query: 66 CLGDKVLRDVAREATAASM*AKLESLYMTKSLAHR---QLLKQQLYSFKMVESISISEQL 122
L + V +A KL + Y + Q L+ + + +M E +S+
Sbjct: 76 GLDEDTFEKVVEATSAKEAWEKLRTSYKGADQVKKVRLQTLRGEFEALQMKEGELVSDY- 134
Query: 123 TEFNKILVDLANIEVNTEDEDKALLL---LCSLPKSFEHFKDTILYGKE-GTTTLEEVQA 178
F+++L N++ N E D ++ L SL FEH I K+ T+E++
Sbjct: 135 --FSRVLTVTNNLKRNGEKLDDVRIMEKVLRSLDLKFEHIVTVIEETKDLEAMTIEQLLG 192
Query: 179 ALRTKELTKFKDLKVDEGSEGLNVA----------RGRNEHRGKGKG------------- 215
+L+ E K K + E + + RG + RG+G+G
Sbjct: 193 SLQAYEEKKKKKEDIIEQVLNMQITKEENGQSYQRRGGGQVRGRGRGGYGNGRGWRPHED 252
Query: 216 ------KSRSKSRSKGFDKSKY-----KCFLCHKQGHFKKDCPDKGGDGSPSVQVAEASN 264
++ S+ R KG KS+Y KC+ C K GH+ +C + + E +N
Sbjct: 253 NTNQRGENSSRGRGKGHPKSRYDKSSVKCYNCGKFGHYASEC-----KAPSNKKFEEKAN 307
Query: 265 --EEGYESTGALVVTSWKSEK-----SWVLDSGCSYHMCPRKEYFETLTLKEGGVVRLGN 317
EE + L++ S+K ++ W LDSG S HMC RK F L G V LG+
Sbjct: 308 YVEEKIQEEDMLLMASYKKDEQEENHKWYLDSGASNHMCGRKSMFAELDESVRGNVALGD 367
Query: 318 NKACKVQGMGNVRLKMFDGREFLLRDVRFVPELKRNLISLSMFDGLGYCTRIEHGVCKI- 376
+V+G GN+ +++ +G + +V ++P +K N++SL GY R++ I
Sbjct: 368 ESKMEVKGKGNILIRLKNGDHQFISNVYYIPSMKTNILSLGQLLEKGYDIRLKDNNLSIR 427
Query: 377 -SHGALITVKGSKMNGLYILDGSIVIGNASVASVVPHNNSELWHLRLGHVSERGLVELAK 435
LIT N +++L +I A + S LWHLR GH++ GL L++
Sbjct: 428 DQESNLITKVPMSKNRMFVL--NIRNDIAQCLKMCYKEESWLWHLRFGHLNFGGLELLSR 485
Query: 436 QGLL-GKDKLD-KLEFCEHCILGKQHRVKF-GSGMHHSSRLFEYVHSDLLGPSKTPTHGG 492
+ ++ G ++ + CE C+LGKQ ++ F + + E +H+D+ GP K + G
Sbjct: 486 KEMVRGLPCINHPNQVCEGCLLGKQFKMSFPKESSSRAQKSLELIHTDVCGPIKPKSLGK 545
Query: 493 GSYFLSIIDDYSRRVWVFVLKKKSDTF*KFKE*HTLIENQMGTKLKGLRTDNGLEFVSEQ 552
+YFL IDD+SR+ WV+ LK+KS+ F FK+ +E + G +K +R+D G EF S++
Sbjct: 546 SNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKKFKAHVEKESGLVIKTMRSDRGGEFTSKE 605
Query: 553 F 553
F
Sbjct: 606 F 606
>At1g58140 hypothetical protein
Length = 1320
Score = 200 bits (509), Expect = 4e-51
Identities = 167/601 (27%), Positives = 279/601 (45%), Gaps = 72/601 (11%)
Query: 15 NDFGLWKVKMQAVLTQQKCVEAL-KG--EAAMPATLTQEEKREMID------KAKSAIVL 65
+++ W ++M+A+L E + KG E +L+Q +K + D KA I
Sbjct: 16 SNYDNWSLRMKAILGAHDVWEIVEKGFIEPENEGSLSQTQKDGLRDSRKRDKKALCLIYQ 75
Query: 66 CLGDKVLRDVAREATAASM*AKLESLYMTKSLAHR---QLLKQQLYSFKMVESISISEQL 122
L + V +A KL + Y + Q L+ + + +M E +S+
Sbjct: 76 GLDEDTFEKVVEATSAKEAWEKLRTSYKGADQVKKVRLQTLRGEFEALQMKEGELVSDY- 134
Query: 123 TEFNKILVDLANIEVNTEDEDKALLL---LCSLPKSFEHFKDTILYGKE-GTTTLEEVQA 178
F+++L N++ N E D ++ L SL FEH I K+ T+E++
Sbjct: 135 --FSRVLTVTNNLKRNGEKLDDVRIMEKVLRSLDLKFEHIVTVIEETKDLEAMTIEQLLG 192
Query: 179 ALRTKELTKFKDLKVDEGSEGLNVA----------RGRNEHRGKGKG------------- 215
+L+ E K K + E + + RG + RG+G+G
Sbjct: 193 SLQAYEEKKKKKEDIVEQVLNMQITKEENGQSYQRRGGGQVRGRGRGGYGNGRGWRPHED 252
Query: 216 ------KSRSKSRSKGFDKSKY-----KCFLCHKQGHFKKDCPDKGGDGSPSVQVAEASN 264
++ S+ R KG KS+Y KC+ C K GH+ +C + + E +N
Sbjct: 253 NTNQRGENSSRGRGKGHPKSRYDKSSVKCYNCGKFGHYASEC-----KAPSNKKFEEKAN 307
Query: 265 --EEGYESTGALVVTSWKSEK-----SWVLDSGCSYHMCPRKEYFETLTLKEGGVVRLGN 317
EE + L++ S+K ++ W LDSG S HMC RK F L G V LG+
Sbjct: 308 YVEEKIQEEDMLLMASYKKDEQEENHKWYLDSGASNHMCGRKSMFAELDESVRGNVALGD 367
Query: 318 NKACKVQGMGNVRLKMFDGREFLLRDVRFVPELKRNLISLSMFDGLGYCTRIEHGVCKI- 376
+V+G GN+ +++ +G + +V ++P +K N++SL GY R++ I
Sbjct: 368 ESKMEVKGKGNILIRLKNGDHQFISNVYYIPSMKTNILSLGQLLEKGYDIRLKDNNLSIR 427
Query: 377 -SHGALITVKGSKMNGLYILDGSIVIGNASVASVVPHNNSELWHLRLGHVSERGLVELAK 435
LIT N +++L +I A + S LWHLR GH++ GL L++
Sbjct: 428 DQESNLITKVPMSKNRMFVL--NIRNDIAQCLKMCYKEESWLWHLRFGHLNFGGLELLSR 485
Query: 436 QGLL-GKDKLD-KLEFCEHCILGKQHRVKF-GSGMHHSSRLFEYVHSDLLGPSKTPTHGG 492
+ ++ G ++ + CE C+LGKQ ++ F + + E +H+D+ GP K + G
Sbjct: 486 KEMVRGLPCINHPNQVCEGCLLGKQFKMSFPKESSSRAQKPLELIHTDVCGPIKPKSLGK 545
Query: 493 GSYFLSIIDDYSRRVWVFVLKKKSDTF*KFKE*HTLIENQMGTKLKGLRTDNGLEFVSEQ 552
+YFL IDD+SR+ WV+ LK+KS+ F FK+ +E + G +K +R+D G EF S++
Sbjct: 546 SNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKKFKAHVEKESGLVIKTMRSDRGGEFTSKE 605
Query: 553 F 553
F
Sbjct: 606 F 606
>At4g04380 putative polyprotein
Length = 778
Score = 200 bits (508), Expect = 5e-51
Identities = 106/287 (36%), Positives = 166/287 (56%), Gaps = 2/287 (0%)
Query: 273 ALVVTSWKSEKSWVLDSGCSYHMCPRKEYFETLTLKEGGVVRLGNNKACKVQGMGNVRLK 332
AL T E W++D+GCSYHM ++E+ E + G VR+GN +V+G+G VR+
Sbjct: 187 ALSSTDIHLEDEWIMDTGCSYHMTHKREWLEDFDEEAGCSVRMGNKTISRVKGVGTVRIA 246
Query: 333 MFDGREFLLRDVRFVPELKRNLISLSMFDGLGYCTRIEHGVCKISHGALITVKGSKMNGL 392
+G L++VR++ ++ R +SL F+ G E+ + +++ G + ++G + + L
Sbjct: 247 NDNGLTVTLQNVRYISDMDRIFLSLGTFEKAGRKFESENDMLRVNAGEQVLLEGRRYDTL 306
Query: 393 YILDGSIVIGNASVASVVPHNNSELWHLRLGHVSERGLVELAKQGLLGKDKLDKLEFCEH 452
YIL G + S+A +++ LWH RL H+S++ + L K+G L K K+ L+ CE
Sbjct: 307 YILHGKPAT-DESLAVAKANDDIVLWHRRLCHMSQKNMSLLVKKGFLDKKKVSMLDTCED 365
Query: 453 CILGKQHRVKFGSGMHHSSRLFEYVHSDLLG-PSKTPTHGGGSYFLSIIDDYSRRVWVFV 511
CI GK ++ F H + EYVH DL G P+ G YF+S IDD++R+V V+
Sbjct: 366 CIYGKAKKIGFNFAQHDTKEKLEYVHYDLWGAPTMPMALGNCQYFISFIDDHTRKVCVYF 425
Query: 512 LKKKSDTF*KFKE*HTLIENQMGTKLKGLRTDNGLEFVSEQFNDFLQ 558
LK K + F KF +L+ENQ G ++K LRTDNGLEF + F+ F +
Sbjct: 426 LKTKDEAFEKFVSWISLVENQSGNRVKTLRTDNGLEFCNRMFDGFCE 472
Score = 97.1 bits (240), Expect = 6e-20
Identities = 61/137 (44%), Positives = 85/137 (61%), Gaps = 17/137 (12%)
Query: 50 EEKREMIDKAKSAIVLCLGDKVLRDVAREATAASM*AKLESLYMTKSLAHRQLLKQQLYS 109
EEK+ K +S IVL + D+VL EA+ + LYM+K+L ++ LKQ+LY
Sbjct: 50 EEKKR---KTRSTIVLSVSDRVL-----EAS--------DRLYMSKALPNQIYLKQKLYR 93
Query: 110 FKMVESISISEQLTEFNKILVDLANIEVNTEDEDKALLLLCSLPKSFEHFKDTILYGKEG 169
FKM E++S+ + EF I+ DL N+ V DED+ +LLL SLPKSF+ KDT+ Y
Sbjct: 94 FKMSENLSMEGNIDEFLHIVADLENLNVLVSDEDQTILLLMSLPKSFDQLKDTLQYSSGK 153
Query: 170 TT-TLEEVQAALRTKEL 185
T TL+EV AA+ +KEL
Sbjct: 154 TVLTLDEVTAAIYSKEL 170
>At3g59720 copia-type reverse transcriptase-like protein
Length = 1272
Score = 199 bits (505), Expect = 1e-50
Identities = 166/601 (27%), Positives = 279/601 (45%), Gaps = 72/601 (11%)
Query: 15 NDFGLWKVKMQAVLTQQKCVEAL-KG--EAAMPATLTQEEKREMID------KAKSAIVL 65
+++ W ++M+A+L E + KG E +L+Q +K + D KA I
Sbjct: 16 SNYDNWSLRMKAILGAHDVWEIVEKGFIEPENEGSLSQTQKDGLRDSRKRDKKALCLIYQ 75
Query: 66 CLGDKVLRDVAREATAASM*AKLESLYMTKSLAHR---QLLKQQLYSFKMVESISISEQL 122
L + V +A KL + Y + Q L+ + + +M E +S+
Sbjct: 76 GLDEDTFEKVVEATSAKEAWEKLRTSYKGADQVKKVRLQTLRGEFEALQMKEGELVSDY- 134
Query: 123 TEFNKILVDLANIEVNTEDEDKALLL---LCSLPKSFEHFKDTILYGKE-GTTTLEEVQA 178
F+++L N++ N E D ++ L SL FEH I K+ T+E++
Sbjct: 135 --FSRVLTVTNNLKRNGEKLDDVRIMEKVLRSLDLKFEHIVTVIEETKDLEAMTIEQLLG 192
Query: 179 ALRTKELTKFKDLKVDEGSEGLNVA----------RGRNEHRGKGKG------------- 215
+L+ E K K + E + + RG + RG+G+G
Sbjct: 193 SLQAYEEKKKKKEDIVEQVLNMQITKEENGQSYQRRGGGQVRGRGRGGYGNGRGWRPHED 252
Query: 216 ------KSRSKSRSKGFDKSKY-----KCFLCHKQGHFKKDCPDKGGDGSPSVQVAEASN 264
++ S+ R KG KS+Y KC+ C K GH+ +C + + E +N
Sbjct: 253 NTNQRGENSSRGRGKGHPKSRYDKSSVKCYNCGKFGHYASEC-----KAPSNKKFKEKAN 307
Query: 265 --EEGYESTGALVVTSWKSEK-----SWVLDSGCSYHMCPRKEYFETLTLKEGGVVRLGN 317
EE + L++ S+K ++ W LDSG S HMC RK F L G V LG+
Sbjct: 308 YVEEKIQEEDMLLMASYKKDEQEENHKWYLDSGASNHMCGRKSMFAELDESVRGNVALGD 367
Query: 318 NKACKVQGMGNVRLKMFDGREFLLRDVRFVPELKRNLISLSMFDGLGYCTRIEHGVCKI- 376
+V+G GN+ +++ +G + +V ++P +K N++SL GY R++ I
Sbjct: 368 ESKMEVKGKGNILIRLKNGDHQFISNVYYIPSMKTNILSLGQLLEKGYDIRLKDNNLSIR 427
Query: 377 -SHGALITVKGSKMNGLYILDGSIVIGNASVASVVPHNNSELWHLRLGHVSERGLVELAK 435
LIT N +++L +I A + S LWHLR GH++ GL L++
Sbjct: 428 DKESNLITKVPMSKNRMFVL--NIRNDIAQCLKMCYKEESWLWHLRFGHLNFGGLELLSR 485
Query: 436 QGLL-GKDKLD-KLEFCEHCILGKQHRVKF-GSGMHHSSRLFEYVHSDLLGPSKTPTHGG 492
+ ++ G ++ + CE C+LG Q ++ F + + E +H+D+ GP K + G
Sbjct: 486 KEMVRGLPCINHPNQVCEGCLLGNQFKMSFPKESSSRAQKPLELIHTDVCGPIKPKSLGK 545
Query: 493 GSYFLSIIDDYSRRVWVFVLKKKSDTF*KFKE*HTLIENQMGTKLKGLRTDNGLEFVSEQ 552
+YFL IDD+SR+ WV+ LK+KS+ F FK+ +E + G +K +R+D+G EF S++
Sbjct: 546 SNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKKFKAHVEKESGLVIKTMRSDSGGEFTSKE 605
Query: 553 F 553
F
Sbjct: 606 F 606
>At1g32590 hypothetical protein, 5' partial
Length = 1263
Score = 191 bits (486), Expect = 2e-48
Identities = 144/529 (27%), Positives = 254/529 (47%), Gaps = 32/529 (6%)
Query: 51 EKREMIDKAKSAIVLCLGDKVLRDVAREATAASM*AKLESLYMTKSLAHRQLLKQQLYSF 110
EK K K+ + + +L+ + ++ T+ + ++ Y L++ SF
Sbjct: 20 EKTVKDHKVKNYLFASIDKTILKTILQKETSKDLWESMKRKYQGNDRVQSAQLQRLRRSF 79
Query: 111 KMVESISISEQLTEFNKILVDLANIEVNT-EDEDKALLLLCSLPKSFEHFKDTILYGKEG 169
+++E + I E +T + ++++ N N ED + ++ L E F + +E
Sbjct: 80 EVLE-MKIGETITGYFSRVMEITNDMRNLGEDMPDSKVVEKILRTLVEKFTYVVCAIEES 138
Query: 170 TTTLEEVQAALRTKELTKFKDLKVDEGSEGLNVA---------RGRNEHRGKGKGKSRSK 220
E L++ + ++L + E + A RGR +G+G+ +
Sbjct: 139 NNIKELTVDGLQSSLMVHEQNLSRHDVEERVLKAETQWRPDGGRGRGGSPSRGRGRGGYQ 198
Query: 221 SRSKGF-DKSKYKCFLCHKQGHFKKDCPDKGGDGSPSVQVAEASNEEGYESTGALVVTSW 279
R +G+ ++ +CF CHK GH+K +CP S + EE +
Sbjct: 199 GRGRGYVNRDTVECFKCHKMGHYKAECP------SWEKEANYVEMEEDLLLMAHVEQIGD 252
Query: 280 KSEKSWVLDSGCSYHMCPRKEYFETLTLKEGGVVRLGNNKACKVQGMGNVRLKMFDGREF 339
+ ++ W LDSGCS HMC +E+F L VRLG+++ V+G G +RL++ DGR
Sbjct: 253 EEKQIWFLDSGCSNHMCGTREWFLELDSGFKQNVRLGDDRRMAVEGKGKLRLEV-DGRIQ 311
Query: 340 LLRDVRFVPELKRNLISLSMFDGLGYCTRIEHGVCKISHGA---LITVKGSKMNGLYILD 396
++ DV FVP LK NL S+ G IE VC++ H ++ N ++++
Sbjct: 312 VISDVYFVPGLKNNLFSVGQLQQKGLRFIIEGDVCEVWHKTEKRMVMHSTMTKNRMFVVF 371
Query: 397 GSIVIGNASVAS----VVPHNNSELWHLRLGHVSERGLVELAKQGLL-GKDKLDKLE--- 448
++ + + V+ N+ +WH R GH++ +GL LA++ ++ G K D E
Sbjct: 372 AAVKKSKETEETRCLQVIGKANN-MWHKRFGHLNHQGLRSLAEKEMVKGLPKFDLGEEEA 430
Query: 449 FCEHCILGKQHRVKFGS-GMHHSSRLFEYVHSDLLGPSKTPTHGGGSYFLSIIDDYSRRV 507
C+ C+ GKQ R S+++ + VH+D+ GP + G Y L+ IDD+SR+
Sbjct: 431 VCDICLKGKQIRESIPKESAWKSTQVLQLVHTDICGPINPASTSGKRYILNFIDDFSRKC 490
Query: 508 WVFVLKKKSDTF*KFKE*HTLIENQMGTKLKGLRTDNGLEFVSEQFNDF 556
W ++L +KS+TF FKE +E + G KL LR+D G E+ S +F+++
Sbjct: 491 WTYLLSEKSETFQFFKEFKAEVERESGKKLVCLRSDRGGEYNSREFDEY 539
>At2g19840 copia-like retroelement pol polyprotein
Length = 1137
Score = 171 bits (433), Expect = 3e-42
Identities = 103/301 (34%), Positives = 170/301 (56%), Gaps = 29/301 (9%)
Query: 50 EEKREMID---KAKSAIVLCLGDKVLRDVAREATAASM*AKLESLYMTKSLAHRQLLKQQ 106
EE++ ID KA I + +GDKVLR++ TAA A L+ LY+ KSL +R L+ +
Sbjct: 32 EEEKARIDQDEKAMDMIFINVGDKVLRNIENSKTAAEAWATLDKLYLVKSLPNRVYLQLK 91
Query: 107 LYSFKMVESISISEQLTEFNKILVDLANIEVNTEDEDKALLLLCSLPKSFEHFKDTILYG 166
+Y+++M +S ++ E + EF K++ DL N+++ DE +A+L+L +LP S++ K+T+ YG
Sbjct: 92 VYNYRMQDSKTLEENVDEFQKMISDLNNLQIQVPDEVQAILILSALPDSYDMLKETLKYG 151
Query: 167 KEGTTTLEEVQAALRTKELTKFKDLKVDEG-----SEGLNVARGRNEHRGKGKGKSRSKS 221
+EG L++V +A ++KEL +L+ G EGL V RG+++ RG KS
Sbjct: 152 REG-IKLDDVISAAKSKEL----ELRDSSGGSRPVGEGLYV-RGKSQARGSDGPKS---- 201
Query: 222 RSKGFDKSKYKCFLCHKQGHFKKDC------PDKGGDGSPSVQVAEASNEEGYESTGALV 275
+ K C++C K+GHFK+ C G G ++ +A + G ++ +
Sbjct: 202 -----TEGKKVCWICGKEGHFKRQCYKWLEKNKANGAGETALVKDDAQDLVGLVASEVNM 256
Query: 276 VTSWKSEKSWVLDSGCSYHMCPRKEYFETLTLKEGGVVRLGNNKACKVQGMGNVRLKMFD 335
++ W++D+GCS+HM PRKEY + G VR+ NN +V+G+G V+ D
Sbjct: 257 SEGKDDQEEWIMDTGCSFHMTPRKEYLMDFVEAKSGKVRMANNSFSEVKGIGKVKFIKKD 316
Query: 336 G 336
G
Sbjct: 317 G 317
Score = 60.1 bits (144), Expect = 8e-09
Identities = 28/60 (46%), Positives = 40/60 (66%)
Query: 501 DDYSRRVWVFVLKKKSDTF*KFKE*HTLIENQMGTKLKGLRTDNGLEFVSEQFNDFLQVE 560
+D+SR+VWV+ LK K + F F E ++E Q KLK LRTDNGLEF + +F++ + E
Sbjct: 319 NDWSRKVWVYFLKTKDEAFASFTEWKKMVETQSERKLKHLRTDNGLEFCNHKFDEVCKKE 378
>At3g32340 hypothetical protein
Length = 871
Score = 166 bits (420), Expect = 8e-41
Identities = 89/278 (32%), Positives = 146/278 (52%), Gaps = 4/278 (1%)
Query: 285 WVLDSGCSYHMCPRKEYFE-TLTLKEGGV-VRLGNNKACKVQGMGNVRLKMFDGREFLLR 342
WVLD+GC H+C + T +EG V +R+ N +G L + G L+
Sbjct: 151 WVLDTGCGAHICVNVHGLNNSRTFEEGQVDLRVANGAKVSALAVGTYSLSLPSGMVLELK 210
Query: 343 DVRFVPELKRNLISLSMFDGLGYCTRIEHGVCKISHGALITVKGSKMNGLYILDGSIVIG 402
+ +VP + +N++S+S D G+ I++ C + NGLY+L+ S+ +
Sbjct: 211 NCYYVPAINKNIVSVSCLDMEGFHFSIKNKCCSFDRDDMFYGSAPLENGLYVLNQSMPVY 270
Query: 403 NASVASVVPH--NNSELWHLRLGHVSERGLVELAKQGLLGKDKLDKLEFCEHCILGKQHR 460
N + N + LWH RLGH++E+ + +L GLL + E CE C+LGK +
Sbjct: 271 NIRTKIFKSNDLNPTFLWHCRLGHINEKRIQKLHSDGLLNSFDYESYETCESCLLGKMTK 330
Query: 461 VKFGSGMHHSSRLFEYVHSDLLGPSKTPTHGGGSYFLSIIDDYSRRVWVFVLKKKSDTF* 520
F + L +H+D+ GP T G YF++ DD+SR +V+++K KS++F
Sbjct: 331 APFSGHSERAGDLLGLIHTDVCGPMSTSARGNYQYFITFTDDFSRYSYVYLMKHKSESFE 390
Query: 521 KFKE*HTLIENQMGTKLKGLRTDNGLEFVSEQFNDFLQ 558
KFKE ++NQ+G +K LR+D G E++S+ F+ L+
Sbjct: 391 KFKEFQNEVQNQLGKSIKALRSDRGGEYLSQVFSGHLR 428
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.346 0.154 0.537
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,796,572
Number of Sequences: 26719
Number of extensions: 1156899
Number of successful extensions: 4998
Number of sequences better than 10.0: 138
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 4396
Number of HSP's gapped (non-prelim): 277
length of query: 1307
length of database: 11,318,596
effective HSP length: 111
effective length of query: 1196
effective length of database: 8,352,787
effective search space: 9989933252
effective search space used: 9989933252
T: 11
A: 40
X1: 15 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.7 bits)
S2: 66 (30.0 bits)
Medicago: description of AC124217.5