BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC124215.1 + phase: 0
(45 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g54220 SCARECROW1 64 1e-11
At5g41920 SCARECROW gene regulator-like protein 55 5e-09
At1g50600 scarecrow-like 5 (SCL5) 37 0.001
At2g01570 putative RGA1, giberellin repsonse modulation protein 35 0.010
At5g52510 scarecrow-like 8 (SCL8) 33 0.028
At3g03450 RGA1-like protein 33 0.028
At2g04890 putative SCARECROW gene regulator 33 0.028
At1g66350 gibberellin regulatory protein like 33 0.028
At1g55580 unknown protein 33 0.036
At1g14920 signal response protein (GAI) 32 0.062
At5g66770 SCARECROW gene regulator 32 0.081
At5g17490 RGA-like protein 31 0.14
At3g50650 scarecrow-like 7 (SCL7) 30 0.31
At1g50420 scarecrow 3 -like protein 29 0.40
At1g21450 scarecrow-like 1 (SCL1) 28 0.89
At5g48150 SCARECROW gene regulator-like 27 1.5
At2g37650 scarecrow-like 9 (SCL9) 27 2.6
At5g59450 putative SCARECROW transcriptional regulatory protein ... 25 5.8
At5g11510 putative c-myb-like transcription factor MYB3R-4 (MYB3R4) 25 5.8
At4g31615 putative protein 25 9.9
>At3g54220 SCARECROW1
Length = 653
Score = 64.3 bits (155), Expect = 1e-11
Identities = 28/33 (84%), Positives = 30/33 (90%)
Query: 1 MFPSEGYTLVEDNGILKLGWKDLCLLTASAWRP 33
MFPS+GYTLV+DNG LKLGWKDL LLTASAW P
Sbjct: 619 MFPSDGYTLVDDNGTLKLGWKDLSLLTASAWTP 651
>At5g41920 SCARECROW gene regulator-like protein
Length = 405
Score = 55.5 bits (132), Expect = 5e-09
Identities = 24/32 (75%), Positives = 27/32 (84%)
Query: 1 MFPSEGYTLVEDNGILKLGWKDLCLLTASAWR 32
M P GYTLVE+NG L+LGWKDL LLTASAW+
Sbjct: 369 MLPWNGYTLVEENGTLRLGWKDLSLLTASAWK 400
>At1g50600 scarecrow-like 5 (SCL5)
Length = 597
Score = 37.4 bits (85), Expect = 0.001
Identities = 17/29 (58%), Positives = 21/29 (71%)
Query: 4 SEGYTLVEDNGILKLGWKDLCLLTASAWR 32
SE YTL E +G L LGWK+ L+T+ AWR
Sbjct: 569 SEKYTLEERDGALYLGWKNQPLITSCAWR 597
>At2g01570 putative RGA1, giberellin repsonse modulation protein
Length = 587
Score = 34.7 bits (78), Expect = 0.010
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 5 EGYTLVEDNGILKLGWKDLCLLTASAWR 32
+GY + E NG L LGW L+T SAW+
Sbjct: 554 QGYRVEESNGCLMLGWHTRPLITTSAWK 581
>At5g52510 scarecrow-like 8 (SCL8)
Length = 525
Score = 33.1 bits (74), Expect = 0.028
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 6 GYTLVEDNGILKLGWKDLCLLTASAWR 32
G+T+ EDNG + GW L ASAWR
Sbjct: 499 GFTVKEDNGGVCFGWMGRALTVASAWR 525
>At3g03450 RGA1-like protein
Length = 547
Score = 33.1 bits (74), Expect = 0.028
Identities = 12/28 (42%), Positives = 20/28 (70%)
Query: 5 EGYTLVEDNGILKLGWKDLCLLTASAWR 32
+GY + E++G L +GW+ L+T SAW+
Sbjct: 518 DGYRVEENDGCLMIGWQTRPLITTSAWK 545
>At2g04890 putative SCARECROW gene regulator
Length = 413
Score = 33.1 bits (74), Expect = 0.028
Identities = 13/29 (44%), Positives = 19/29 (64%)
Query: 4 SEGYTLVEDNGILKLGWKDLCLLTASAWR 32
S GY + E +G L LGW D L+++ AW+
Sbjct: 385 SNGYAIEERDGALYLGWMDRILVSSCAWK 413
>At1g66350 gibberellin regulatory protein like
Length = 511
Score = 33.1 bits (74), Expect = 0.028
Identities = 13/29 (44%), Positives = 19/29 (64%)
Query: 4 SEGYTLVEDNGILKLGWKDLCLLTASAWR 32
++GY + E+ G L LGW+ L+ SAWR
Sbjct: 478 ADGYNVEENEGCLLLGWQTRPLIATSAWR 506
>At1g55580 unknown protein
Length = 445
Score = 32.7 bits (73), Expect = 0.036
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 2 FPSEGYTLVEDNGILKLGWKDLCLLTASAWR 32
+PSEGY L N L LGW++ L + S+W+
Sbjct: 415 YPSEGYNLQFLNNSLFLGWQNRPLFSVSSWK 445
>At1g14920 signal response protein (GAI)
Length = 533
Score = 32.0 bits (71), Expect = 0.062
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 5 EGYTLVEDNGILKLGWKDLCLLTASAWR 32
EGY + E +G L LGW L+ SAW+
Sbjct: 502 EGYRVEESDGCLMLGWHTRPLIATSAWK 529
>At5g66770 SCARECROW gene regulator
Length = 584
Score = 31.6 bits (70), Expect = 0.081
Identities = 14/27 (51%), Positives = 18/27 (65%), Gaps = 1/27 (3%)
Query: 7 YTLVEDN-GILKLGWKDLCLLTASAWR 32
Y++VE G + L W DL LLT S+WR
Sbjct: 558 YSIVESKPGFISLAWNDLPLLTLSSWR 584
>At5g17490 RGA-like protein
Length = 523
Score = 30.8 bits (68), Expect = 0.14
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 5 EGYTLVEDNGILKLGWKDLCLLTASAWR 32
+GY + E++G L L W+ L+ ASAW+
Sbjct: 489 DGYRVEENDGSLMLAWQTKPLIAASAWK 516
>At3g50650 scarecrow-like 7 (SCL7)
Length = 542
Score = 29.6 bits (65), Expect = 0.31
Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 7 YTLVEDN-GILKLGWKDLCLLTASAWR 32
Y+LVE G + L W ++ LLT S+WR
Sbjct: 516 YSLVESEPGFISLAWNNVPLLTVSSWR 542
>At1g50420 scarecrow 3 -like protein
Length = 482
Score = 29.3 bits (64), Expect = 0.40
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 5 EGYTLVEDNGILKLGWKDLCLLTASAWR 32
+GY + E++G + W+D L + SAWR
Sbjct: 452 DGYRIKEESGCAVICWQDRPLYSVSAWR 479
>At1g21450 scarecrow-like 1 (SCL1)
Length = 593
Score = 28.1 bits (61), Expect = 0.89
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 7 YTLVEDNGILKLGWKDLCLLTASAWR 32
Y L E+ G L W++ L+ ASAWR
Sbjct: 568 YKLKEEMGELHFCWEEKSLIVASAWR 593
>At5g48150 SCARECROW gene regulator-like
Length = 490
Score = 27.3 bits (59), Expect = 1.5
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 4 SEGYTLVEDNGILKLGWKDLCLLTASAWR 32
S+ Y L E +G L LGW L+ + AW+
Sbjct: 462 SDKYRLEERDGALYLGWMHRDLVASCAWK 490
>At2g37650 scarecrow-like 9 (SCL9)
Length = 718
Score = 26.6 bits (57), Expect = 2.6
Identities = 10/32 (31%), Positives = 17/32 (52%)
Query: 2 FPSEGYTLVEDNGILKLGWKDLCLLTASAWRP 33
F + + + +DN L GWK ++ S W+P
Sbjct: 683 FYHKDFVIDQDNRWLLQGWKGRTVMALSVWKP 714
>At5g59450 putative SCARECROW transcriptional regulatory protein
(F2O15.13)
Length = 610
Score = 25.4 bits (54), Expect = 5.8
Identities = 11/36 (30%), Positives = 17/36 (46%), Gaps = 2/36 (5%)
Query: 7 YTLVEDNGILKLGWKDLCLLTASAWRP--PFHTNNI 40
+ + DN + GWK + S W+P F NN+
Sbjct: 573 FVIDSDNNWMLQGWKGRVIYAFSCWKPAEKFTNNNL 608
>At5g11510 putative c-myb-like transcription factor MYB3R-4 (MYB3R4)
Length = 961
Score = 25.4 bits (54), Expect = 5.8
Identities = 12/38 (31%), Positives = 19/38 (49%), Gaps = 7/38 (18%)
Query: 12 DNGILKLGWKDLC-------LLTASAWRPPFHTNNIIP 42
DNG + C L + SAW+ PF+ N+++P
Sbjct: 821 DNGTSNENFSIFCGTPFRRGLESPSAWKSPFYINSLLP 858
>At4g31615 putative protein
Length = 478
Score = 24.6 bits (52), Expect = 9.9
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 7 YTLVEDNGILKLGWKDLCLL 26
Y+ V D + GW+D CL+
Sbjct: 201 YSTVNDQASISGGWRDFCLV 220
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.322 0.141 0.490
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,292,051
Number of Sequences: 26719
Number of extensions: 35404
Number of successful extensions: 86
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 66
Number of HSP's gapped (non-prelim): 21
length of query: 45
length of database: 11,318,596
effective HSP length: 21
effective length of query: 24
effective length of database: 10,757,497
effective search space: 258179928
effective search space used: 258179928
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)
Medicago: description of AC124215.1