BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC123898.6 - phase: 0 /pseudo
(478 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g69295 predicted GPI-anchored protein 36 0.053
At2g32800 putative protein kinase 35 0.091
At3g29710 hypothetical protein 33 0.26
At1g34090 putative protein 33 0.26
At2g04330 hypothetical protein 33 0.35
At5g15600 nitrilase associated protein-like 33 0.45
At2g23480 hypothetical protein 33 0.45
At3g02180 unknown protein 32 1.0
At3g02175 unknown protein 32 1.0
At3g28790 unknown protein 31 1.3
At3g19570 unknown protein 31 1.7
At4g00940 putative protein 30 2.2
At4g11870 hypothetical protein 30 2.9
At2g38470 putative WRKY-type DNA binding protein 30 2.9
At1g04170 putative translation initiation factor eIF-2, gamma su... 30 2.9
At5g01280 putative protein 30 3.8
At2g44910 homeodomain transcription factor (ATHB-4) 30 3.8
At1g18650 predicted GPI-anchored protein (by homology) 30 3.8
At3g46620 unknown protein 29 5.0
At2g17550 hypothetical protein 29 5.0
>At1g69295 predicted GPI-anchored protein
Length = 222
Score = 35.8 bits (81), Expect = 0.053
Identities = 20/34 (58%), Positives = 23/34 (66%), Gaps = 1/34 (2%)
Query: 37 PTTTTETTTTATT-TETSTTETTTTKTTTTPTTG 69
PTT T TT T T+ T T+ T TT T TT TPT+G
Sbjct: 112 PTTGTPTTGTPTSGTPTTGTPTTGTPTTGTPTSG 145
Score = 35.4 bits (80), Expect = 0.070
Identities = 20/38 (52%), Positives = 24/38 (62%), Gaps = 1/38 (2%)
Query: 33 TKAPPTTTTETTTTATT-TETSTTETTTTKTTTTPTTG 69
T PTT T T+ T TT T T+ T TT T T+ TPT+G
Sbjct: 113 TTGTPTTGTPTSGTPTTGTPTTGTPTTGTPTSGTPTSG 150
Score = 33.5 bits (75), Expect = 0.26
Identities = 20/38 (52%), Positives = 21/38 (54%), Gaps = 1/38 (2%)
Query: 33 TKAPPTTTTETTTTATT-TETSTTETTTTKTTTTPTTG 69
T PTT T TT T TT T TS T T+ T TP TG
Sbjct: 123 TSGTPTTGTPTTGTPTTGTPTSGTPTSGFPNTGTPNTG 160
>At2g32800 putative protein kinase
Length = 848
Score = 35.0 bits (79), Expect = 0.091
Identities = 17/35 (48%), Positives = 23/35 (65%)
Query: 36 PPTTTTETTTTATTTETSTTETTTTKTTTTPTTGE 70
P ++ T+T+ATTT T TT TTTT TT+ + E
Sbjct: 435 PLSSLKSTSTSATTTTTRTTMTTTTSTTSFNASSE 469
Score = 32.0 bits (71), Expect = 0.77
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 30 LKLTKAPPTTTTETTTTATTTETSTTETTTTKTTTTPT 67
+ L+ T+T+ TTTT TT T+TT TT+ ++ T
Sbjct: 434 IPLSSLKSTSTSATTTTTRTTMTTTTSTTSFNASSEST 471
Score = 30.4 bits (67), Expect = 2.2
Identities = 18/49 (36%), Positives = 25/49 (50%), Gaps = 1/49 (2%)
Query: 27 LCRLKLTKAPPTTTTETTTTATTTETSTTETTTTKT-TTTPTTGEEDQL 74
L LK T TTTT TT TTT T++ ++ T ++ T ED +
Sbjct: 436 LSSLKSTSTSATTTTTRTTMTTTTSTTSFNASSESTPSSNYVTALEDSI 484
Score = 30.4 bits (67), Expect = 2.2
Identities = 15/35 (42%), Positives = 21/35 (59%)
Query: 34 KAPPTTTTETTTTATTTETSTTETTTTKTTTTPTT 68
K+ P ++ +T+T +TT T TT TTTT TT
Sbjct: 428 KSHPLYIPLSSLKSTSTSATTTTTRTTMTTTTSTT 462
Score = 29.6 bits (65), Expect = 3.8
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 37 PTTTTETTTTATTTETSTTETTTTKTTTTPTTGEE 71
P ++ ++T+T+ TT T+ T TTT +TT+ E
Sbjct: 435 PLSSLKSTSTSATTTTTRTTMTTTTSTTSFNASSE 469
>At3g29710 hypothetical protein
Length = 669
Score = 33.5 bits (75), Expect = 0.26
Identities = 16/35 (45%), Positives = 18/35 (50%)
Query: 34 KAPPTTTTETTTTATTTETSTTETTTTKTTTTPTT 68
K P + T TTAT T+ TT TTT PTT
Sbjct: 65 KVPAEEQSPTQTTATAMATNAAPTTAAPTTTAPTT 99
Score = 29.3 bits (64), Expect = 5.0
Identities = 16/32 (50%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 37 PTTTTETTTTATTTETSTTETTTTKTTTTPTT 68
PT TT T AT +T TTT TT PTT
Sbjct: 73 PTQTT-ATAMATNAAPTTAAPTTTAPTTAPTT 103
>At1g34090 putative protein
Length = 761
Score = 33.5 bits (75), Expect = 0.26
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 33 TKAPPTTTTETTTTATTTETSTTETTTTKTTTTP 66
T +PP T T T ++T++E S T T+ T TTP
Sbjct: 77 TSSPPGTPTATQASSTSSEKSKTPTSIPSTPTTP 110
>At2g04330 hypothetical protein
Length = 564
Score = 33.1 bits (74), Expect = 0.35
Identities = 16/35 (45%), Positives = 18/35 (50%)
Query: 34 KAPPTTTTETTTTATTTETSTTETTTTKTTTTPTT 68
+AP TT T AT T+ TT TTT PTT
Sbjct: 64 QAPAKTTATAQTIATAMATNAAPTTAALTTTAPTT 98
Score = 29.3 bits (64), Expect = 5.0
Identities = 15/35 (42%), Positives = 16/35 (44%)
Query: 34 KAPPTTTTETTTTATTTETSTTETTTTKTTTTPTT 68
K T T T AT +T TTT TT PTT
Sbjct: 68 KTTATAQTIATAMATNAAPTTAALTTTAPTTAPTT 102
>At5g15600 nitrilase associated protein-like
Length = 127
Score = 32.7 bits (73), Expect = 0.45
Identities = 17/38 (44%), Positives = 21/38 (54%)
Query: 36 PPTTTTETTTTATTTETSTTETTTTKTTTTPTTGEEDQ 73
P T TTTT TTT T TTTT TTG++++
Sbjct: 32 PNAKTGFTTTTTTTTTTDGAGGRPKTTTTTTTTGDKNK 69
Score = 28.9 bits (63), Expect = 6.5
Identities = 17/41 (41%), Positives = 19/41 (45%)
Query: 38 TTTTETTTTATTTETSTTETTTTKTTTTPTTGEEDQL*ILG 78
TTTT TTTT TTTT TT EE+ + G
Sbjct: 39 TTTTTTTTTTDGAGGRPKTTTTTTTTGDKNKTEENSAGVRG 79
>At2g23480 hypothetical protein
Length = 705
Score = 32.7 bits (73), Expect = 0.45
Identities = 19/38 (50%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Query: 34 KAPPTTTTETTTTATTTETSTTET---TTTKTTTTPTT 68
KA T +TT TA TT T+ T TTT TT PTT
Sbjct: 69 KAKVQATAKTTATAQTTATAMATTAAPTTTAPTTAPTT 106
Score = 28.9 bits (63), Expect = 6.5
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 35 APPTTTTETTTTA--TTTETSTTETTTTKTTTTP 66
A T T +TT TA TT +TT TT TT +P
Sbjct: 76 AKTTATAQTTATAMATTAAPTTTAPTTAPTTESP 109
>At3g02180 unknown protein
Length = 122
Score = 31.6 bits (70), Expect = 1.0
Identities = 16/27 (59%), Positives = 16/27 (59%)
Query: 39 TTTETTTTATTTETSTTETTTTKTTTT 65
TTT TTTT TT T TTT TT T
Sbjct: 35 TTTTTTTTTTTDGTGGRPITTTTTTVT 61
Score = 30.8 bits (68), Expect = 1.7
Identities = 18/44 (40%), Positives = 21/44 (46%)
Query: 35 APPTTTTETTTTATTTETSTTETTTTKTTTTPTTGEEDQL*ILG 78
A T T TTTT TTT T T TTTT T ++ + G
Sbjct: 29 AAATMGTTTTTTTTTTTDGTGGRPITTTTTTVTDNKKTSAGVRG 72
Score = 29.6 bits (65), Expect = 3.8
Identities = 17/36 (47%), Positives = 18/36 (49%)
Query: 33 TKAPPTTTTETTTTATTTETSTTETTTTKTTTTPTT 68
T TTTT TTTT T T TTTT T T+
Sbjct: 32 TMGTTTTTTTTTTTDGTGGRPITTTTTTVTDNKKTS 67
Score = 28.5 bits (62), Expect = 8.5
Identities = 16/36 (44%), Positives = 17/36 (46%)
Query: 33 TKAPPTTTTETTTTATTTETSTTETTTTKTTTTPTT 68
+ A T TTTT TTT T T TTTT T
Sbjct: 26 SSAAAATMGTTTTTTTTTTTDGTGGRPITTTTTTVT 61
>At3g02175 unknown protein
Length = 122
Score = 31.6 bits (70), Expect = 1.0
Identities = 16/27 (59%), Positives = 16/27 (59%)
Query: 39 TTTETTTTATTTETSTTETTTTKTTTT 65
TTT TTTT TT T TTT TT T
Sbjct: 35 TTTTTTTTTTTDGTGGRPITTTTTTVT 61
Score = 30.8 bits (68), Expect = 1.7
Identities = 18/44 (40%), Positives = 21/44 (46%)
Query: 35 APPTTTTETTTTATTTETSTTETTTTKTTTTPTTGEEDQL*ILG 78
A T T TTTT TTT T T TTTT T ++ + G
Sbjct: 29 AAATMGTTTTTTTTTTTDGTGGRPITTTTTTVTDNKKTSAGVRG 72
Score = 29.6 bits (65), Expect = 3.8
Identities = 17/36 (47%), Positives = 18/36 (49%)
Query: 33 TKAPPTTTTETTTTATTTETSTTETTTTKTTTTPTT 68
T TTTT TTTT T T TTTT T T+
Sbjct: 32 TMGTTTTTTTTTTTDGTGGRPITTTTTTVTDNKKTS 67
Score = 28.5 bits (62), Expect = 8.5
Identities = 16/36 (44%), Positives = 17/36 (46%)
Query: 33 TKAPPTTTTETTTTATTTETSTTETTTTKTTTTPTT 68
+ A T TTTT TTT T T TTTT T
Sbjct: 26 SSAAAATMGTTTTTTTTTTTDGTGGRPITTTTTTVT 61
>At3g28790 unknown protein
Length = 608
Score = 31.2 bits (69), Expect = 1.3
Identities = 14/32 (43%), Positives = 20/32 (61%)
Query: 37 PTTTTETTTTATTTETSTTETTTTKTTTTPTT 68
PT T T T +T T ++ T +T T +T TP+T
Sbjct: 279 PTPTPSTPTPSTPTPSTPTPSTPTPSTPTPST 310
Score = 30.4 bits (67), Expect = 2.2
Identities = 14/36 (38%), Positives = 20/36 (54%)
Query: 33 TKAPPTTTTETTTTATTTETSTTETTTTKTTTTPTT 68
T P T T T T +T T ++ T +T T +T P+T
Sbjct: 280 TPTPSTPTPSTPTPSTPTPSTPTPSTPTPSTPAPST 315
>At3g19570 unknown protein
Length = 644
Score = 30.8 bits (68), Expect = 1.7
Identities = 13/32 (40%), Positives = 23/32 (71%)
Query: 32 LTKAPPTTTTETTTTATTTETSTTETTTTKTT 63
L+ +P +TT TTTTAT+T TS++ + +++
Sbjct: 52 LSPSPSHSTTTTTTTATSTSTSSSSSVILRSS 83
>At4g00940 putative protein
Length = 278
Score = 30.4 bits (67), Expect = 2.2
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 33 TKAPPTTTTETTTTATTTETSTTETTTTKTTTTP 66
T+ PPTTTT +TTATT + T +T P
Sbjct: 15 TQPPPTTTTMDSTTATTMIMDDEKKLMTTMSTRP 48
>At4g11870 hypothetical protein
Length = 74
Score = 30.0 bits (66), Expect = 2.9
Identities = 15/32 (46%), Positives = 17/32 (52%)
Query: 36 PPTTTTETTTTATTTETSTTETTTTKTTTTPT 67
P TT T+ATTT T+ T T T TPT
Sbjct: 41 PTTTVVPAITSATTTVTAPTMAVTPVTMGTPT 72
>At2g38470 putative WRKY-type DNA binding protein
Length = 512
Score = 30.0 bits (66), Expect = 2.9
Identities = 13/17 (76%), Positives = 14/17 (81%)
Query: 37 PTTTTETTTTATTTETS 53
PTTTT TTTT TTT +S
Sbjct: 122 PTTTTTTTTTTTTTNSS 138
>At1g04170 putative translation initiation factor eIF-2, gamma
subunit
Length = 465
Score = 30.0 bits (66), Expect = 2.9
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 10/54 (18%)
Query: 159 KVSQLFGGI--GSLFRGVDKINALFEL-------GER*NSRCLTDFYLKIMNKF 203
+V ++ GG+ GS+ RGV ++N L E+ ER NS+C T Y +I++ +
Sbjct: 263 EVDEIKGGVAGGSILRGVLRVNQLIEIRPGIVTKDERGNSKC-TPIYSRIISLY 315
>At5g01280 putative protein
Length = 460
Score = 29.6 bits (65), Expect = 3.8
Identities = 14/39 (35%), Positives = 22/39 (55%)
Query: 31 KLTKAPPTTTTETTTTATTTETSTTETTTTKTTTTPTTG 69
K P + T TTT AT T +STT +T + + + ++G
Sbjct: 109 KRPSTPTSRATSTTTRATLTSSSTTSSTRSWSRPSSSSG 147
Score = 29.3 bits (64), Expect = 5.0
Identities = 14/36 (38%), Positives = 19/36 (51%)
Query: 33 TKAPPTTTTETTTTATTTETSTTETTTTKTTTTPTT 68
T PPT T ++ T A T T+ T+T T T T+
Sbjct: 94 TSRPPTPTRKSKTPAKRPSTPTSRATSTTTRATLTS 129
>At2g44910 homeodomain transcription factor (ATHB-4)
Length = 318
Score = 29.6 bits (65), Expect = 3.8
Identities = 14/38 (36%), Positives = 19/38 (49%)
Query: 30 LKLTKAPPTTTTETTTTATTTETSTTETTTTKTTTTPT 67
L + PPTT T + + ++ T T TTTTPT
Sbjct: 257 LYMHMTPPTTLTMCPSCERVSSSAATVTAAPSTTTTPT 294
>At1g18650 predicted GPI-anchored protein (by homology)
Length = 184
Score = 29.6 bits (65), Expect = 3.8
Identities = 17/37 (45%), Positives = 20/37 (53%), Gaps = 3/37 (8%)
Query: 36 PPTTTTETTTTATTTETSTTETTTTKT---TTTPTTG 69
P + + TTT TT ST TTT T T TP+TG
Sbjct: 105 PASASGSGTTTPVTTTPSTRVPTTTNTRPYTITPSTG 141
>At3g46620 unknown protein
Length = 395
Score = 29.3 bits (64), Expect = 5.0
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 41 TETTTTATTTETSTTETTTTKTTTT 65
+ + T TTE++TT TTTT T TT
Sbjct: 5 SRSATITPTTESTTTTTTTTTTLTT 29
Score = 29.3 bits (64), Expect = 5.0
Identities = 14/23 (60%), Positives = 17/23 (73%)
Query: 46 TATTTETSTTETTTTKTTTTPTT 68
+AT T T+ + TTTT TTTT TT
Sbjct: 7 SATITPTTESTTTTTTTTTTLTT 29
Score = 28.9 bits (63), Expect = 6.5
Identities = 13/28 (46%), Positives = 18/28 (63%)
Query: 37 PTTTTETTTTATTTETSTTETTTTKTTT 64
P + + T T T + T+TT TTTT TT+
Sbjct: 3 PNSRSATITPTTESTTTTTTTTTTLTTS 30
Score = 28.5 bits (62), Expect = 8.5
Identities = 16/36 (44%), Positives = 21/36 (57%)
Query: 38 TTTTETTTTATTTETSTTETTTTKTTTTPTTGEEDQ 73
T TTE+TTT TTT T+ T + + T + EDQ
Sbjct: 11 TPTTESTTTTTTTTTTLTTSYWCYSCTRFISVWEDQ 46
>At2g17550 hypothetical protein
Length = 765
Score = 29.3 bits (64), Expect = 5.0
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 275 AELIEKSL--RNFSNFRRYSPQNQADDKEKSAAIKDSNHVSKASSYGRAVHLQSRPLSKS 332
A+LI+KS+ N ++ S QNQ DD I + NH + + PL+KS
Sbjct: 612 AKLIKKSVLEETKENLKKRSNQNQEDDDTGETTISEENHNILFDLLNEVLTVVLGPLTKS 671
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.347 0.149 0.494
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,733,837
Number of Sequences: 26719
Number of extensions: 303514
Number of successful extensions: 2647
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 2272
Number of HSP's gapped (non-prelim): 153
length of query: 478
length of database: 11,318,596
effective HSP length: 103
effective length of query: 375
effective length of database: 8,566,539
effective search space: 3212452125
effective search space used: 3212452125
T: 11
A: 40
X1: 14 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.8 bits)
S2: 62 (28.5 bits)
Medicago: description of AC123898.6