BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC123574.1 + phase: 0 /pseudo
(527 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g10990 putative retrotransposon polyprotein 298 6e-81
At4g23160 putative protein 278 5e-75
At1g70010 hypothetical protein 273 1e-73
At2g16000 putative retroelement pol polyprotein 273 2e-73
At1g47650 hypothetical protein 271 6e-73
At2g20460 putative retroelement pol polyprotein 265 5e-71
At2g15870 putative retroelement pol polyprotein 263 2e-70
At4g14460 retrovirus-related like polyprotein 258 6e-69
At1g26990 polyprotein, putative 258 6e-69
At4g19780 putative LTR retrotransposon (fragment) 257 1e-68
At4g17450 retrotransposon like protein 255 5e-68
At2g13940 putative retroelement pol polyprotein 245 5e-65
At2g16670 putative retroelement pol polyprotein 239 3e-63
At2g23330 putative retroelement pol polyprotein 238 6e-63
At4g22040 LTR retrotransposon like protein 235 5e-62
At1g57640 235 5e-62
At2g06840 putative retroelement pol polyprotein 228 8e-60
At2g15920 putative retroelement pol polyprotein 224 9e-59
At2g04820 putative retroelement pol polyprotein 221 1e-57
At1g59265 polyprotein, putative 212 5e-55
>At4g10990 putative retrotransposon polyprotein
Length = 1203
Score = 298 bits (762), Expect = 6e-81
Identities = 143/262 (54%), Positives = 192/262 (72%)
Query: 266 SEFNNIKSVLRASFKIKDLGQLKYFLGLQVAHSKQGISLCQRKYCLDLLADSGLTHSKPI 325
S N+K +LR+ FKIKDLG ++FLGL++A S +GIS+CQRKY +LL D GL+ KP
Sbjct: 734 SAVENLKELLRSEFKIKDLGPARFFLGLEIARSSEGISVCQRKYAQNLLEDVGLSGCKPS 793
Query: 326 STPSDPSVKLHRDSSPPYTDISAYRRLVGRLLYLNTTRPDITFVTQQLSQFLAKRTQVHH 385
S P DP++ L ++ + ++YR LVGRLLYL TRPDITF LSQFL+ T +H
Sbjct: 794 SIPMDPNLHLTKEMGTLLPNATSYRELVGRLLYLCITRPDITFAVHTLSQFLSAPTDIHM 853
Query: 386 SAAMRVLKYLKTSLGKGLFFPRDSALQILGFSDADWAGCLDSRRSISGQCFFLGKSLISW 445
AA +VL+YLK + G+GL + S L + GFSDADW C DSRRS++G C +LG SLI+W
Sbjct: 854 QAAHKVLRYLKGNPGQGLMYSASSELCLNGFSDADWGTCKDSRRSVTGFCIYLGTSLITW 913
Query: 446 RTKKQLIVSRSSSKEEYRALAAATCELQWLLYLLQDLQLQTSKLHVLYCDNQSALHIAAN 505
++KKQ +VSRSS++ EYR+LA ATCE+ WL LL+DL + + L+CDN+SALH+A N
Sbjct: 914 KSKKQSVVSRSSTESEYRSLAQATCEIIWLQQLLKDLHVTMTCPAKLFCDNKSALHLATN 973
Query: 506 PIFHERTKHLEIDCHLVQDKLQ 527
P+FHERTKH+EIDCH V+D+++
Sbjct: 974 PVFHERTKHIEIDCHTVRDQIK 995
>At4g23160 putative protein
Length = 1240
Score = 278 bits (711), Expect = 5e-75
Identities = 132/257 (51%), Positives = 181/257 (70%)
Query: 269 NNIKSVLRASFKIKDLGQLKYFLGLQVAHSKQGISLCQRKYCLDLLADSGLTHSKPISTP 328
+ +KS L++ FK++DLG LKYFLGL++A S GI++CQRKY LDLL ++GL KP S P
Sbjct: 298 DELKSQLKSCFKLRDLGPLKYFLGLEIARSAAGINICQRKYALDLLDETGLLGCKPSSVP 357
Query: 329 SDPSVKLHRDSSPPYTDISAYRRLVGRLLYLNTTRPDITFVTQQLSQFLAKRTQVHHSAA 388
DPSV S + D AYRRL+GRL+YL TR DI+F +LSQF H A
Sbjct: 358 MDPSVTFSAHSGGDFVDAKAYRRLIGRLMYLQITRLDISFAVNKLSQFSEAPRLAHQQAV 417
Query: 389 MRVLKYLKTSLGKGLFFPRDSALQILGFSDADWAGCLDSRRSISGQCFFLGKSLISWRTK 448
M++L Y+K ++G+GLF+ + +Q+ FSDA + C D+RRS +G C FLG SLISW++K
Sbjct: 418 MKILHYIKGTVGQGLFYSSQAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSK 477
Query: 449 KQLIVSRSSSKEEYRALAAATCELQWLLYLLQDLQLQTSKLHVLYCDNQSALHIAANPIF 508
KQ +VS+SS++ EYRAL+ AT E+ WL ++LQL SK +L+CDN +A+HIA N +F
Sbjct: 478 KQQVVSKSSAEAEYRALSFATDEMMWLAQFFRELQLPLSKPTLLFCDNTAAIHIATNAVF 537
Query: 509 HERTKHLEIDCHLVQDK 525
HERTKH+E DCH V+++
Sbjct: 538 HERTKHIESDCHSVRER 554
>At1g70010 hypothetical protein
Length = 1315
Score = 273 bits (699), Expect = 1e-73
Identities = 128/256 (50%), Positives = 185/256 (72%)
Query: 271 IKSVLRASFKIKDLGQLKYFLGLQVAHSKQGISLCQRKYCLDLLADSGLTHSKPISTPSD 330
+KS +++ FK++DLG+LKYFLGL++ S +GI + QRKY LDLL ++G KP S P D
Sbjct: 1015 LKSQMKSFFKLRDLGELKYFLGLEIVRSDKGIHISQRKYALDLLDETGQLGCKPSSIPMD 1074
Query: 331 PSVKLHRDSSPPYTDISAYRRLVGRLLYLNTTRPDITFVTQQLSQFLAKRTQVHHSAAMR 390
PS+ DS + ++ YRRL+GRL+YLN TRPDITF +L+QF + H A +
Sbjct: 1075 PSMVFAHDSGGDFVEVGPYRRLIGRLMYLNITRPDITFAVNKLAQFSMAPRKAHLQAVYK 1134
Query: 391 VLKYLKTSLGKGLFFPRDSALQILGFSDADWAGCLDSRRSISGQCFFLGKSLISWRTKKQ 450
+L+Y+K ++G+GLF+ S LQ+ +++AD+ C DSRRS SG C FLG SLI W+++KQ
Sbjct: 1135 ILQYIKGTIGQGLFYSATSELQLKVYANADYNSCRDSRRSTSGYCMFLGDSLICWKSRKQ 1194
Query: 451 LIVSRSSSKEEYRALAAATCELQWLLYLLQDLQLQTSKLHVLYCDNQSALHIAANPIFHE 510
+VS+SS++ EYR+L+ AT EL WL L++LQ+ SK +L+CDN++A+HIA N +FHE
Sbjct: 1195 DVVSKSSAEAEYRSLSVATDELVWLTNFLKELQVPLSKPTLLFCDNEAAIHIANNHVFHE 1254
Query: 511 RTKHLEIDCHLVQDKL 526
RTKH+E DCH V+++L
Sbjct: 1255 RTKHIESDCHSVRERL 1270
>At2g16000 putative retroelement pol polyprotein
Length = 1454
Score = 273 bits (698), Expect = 2e-73
Identities = 131/248 (52%), Positives = 179/248 (71%), Gaps = 1/248 (0%)
Query: 279 FKIKDLGQLKYFLGLQVAHSKQGISLCQRKYCLDLLADSGLTHSKPISTPSDPSVKLHRD 338
FK++DLG LKYFLGL+VA + GIS+CQRKY L+LL +G+ KP+S P P++K+ +D
Sbjct: 1162 FKLRDLGDLKYFLGLEVARTTAGISICQRKYALELLQSTGMLACKPVSVPMIPNLKMRKD 1221
Query: 339 SSPPYTDISAYRRLVGRLLYLNTTRPDITFVTQQLSQFLAKRTQVHHSAAMRVLKYLKTS 398
DI YRR+VG+L+YL TRPDITF +L QF + H +AA RVL+Y+K +
Sbjct: 1222 DGDLIEDIEQYRRIVGKLMYLTITRPDITFAVNKLCQFSSAPRTTHLTAAYRVLQYIKGT 1281
Query: 399 LGKGLFFPRDSALQILGFSDADWAGCLDSRRSISGQCFFLGKSLISWRTKKQLIVSRSSS 458
+G+GLF+ S L + GF+D+DWA C DSRRS + F+G SLISWR+KKQ VSRSS+
Sbjct: 1282 VGQGLFYSASSDLTLKGFADSDWASCQDSRRSTTSFTMFVGDSLISWRSKKQHTVSRSSA 1341
Query: 459 KEEYRALAAATCELQWLLYLLQDLQLQTSKLHVLYCDNQSALHIAANPIFHERTKHLEID 518
+ EYRALA ATCE+ WL LL LQ + + +LY D+ +A++IA NP+FHERTKH+++D
Sbjct: 1342 EAEYRALALATCEMVWLFTLLVSLQ-ASPPVPILYSDSTAAIYIATNPVFHERTKHIKLD 1400
Query: 519 CHLVQDKL 526
CH V+++L
Sbjct: 1401 CHTVRERL 1408
>At1g47650 hypothetical protein
Length = 1409
Score = 271 bits (693), Expect = 6e-73
Identities = 133/252 (52%), Positives = 181/252 (71%), Gaps = 1/252 (0%)
Query: 275 LRASFKIKDLGQLKYFLGLQVAHSKQGISLCQRKYCLDLLADSGLTHSKPISTPSDPSVK 334
L+ FK++DLG LKYFLGL++A ++ GIS+CQRKY L+LLA +G+ + KP+S P P+VK
Sbjct: 949 LQQRFKLRDLGDLKYFLGLEIARTEAGISICQRKYALELLASTGMVNCKPVSVPMIPNVK 1008
Query: 335 LHRDSSPPYTDISAYRRLVGRLLYLNTTRPDITFVTQQLSQFLAKRTQVHHSAAMRVLKY 394
+ + D YRR+VG+L+YL TR DITF +L QF + H AA RVL+Y
Sbjct: 1009 MMKTDGDLLDDREQYRRIVGKLMYLTITRLDITFAVNKLCQFSSAPRTSHLQAAYRVLQY 1068
Query: 395 LKTSLGKGLFFPRDSALQILGFSDADWAGCLDSRRSISGQCFFLGKSLISWRTKKQLIVS 454
+K S+G+GLF+ + L + GF+D+DWA C DSRRS +G F+G SLISWR+KKQ +VS
Sbjct: 1069 IKGSVGQGLFYSASADLTLKGFADSDWASCPDSRRSTTGFSMFVGDSLISWRSKKQHVVS 1128
Query: 455 RSSSKEEYRALAAATCELQWLLYLLQDLQLQTSKLHVLYCDNQSALHIAANPIFHERTKH 514
RSS++ EYRALA TCEL WL LL L+ + + VLY D+ +A++IA NP+FHERTKH
Sbjct: 1129 RSSAEAEYRALALVTCELVWLHTLLMSLK-ASYLVPVLYSDSTTAIYIATNPVFHERTKH 1187
Query: 515 LEIDCHLVQDKL 526
+E+DCH V++KL
Sbjct: 1188 IELDCHTVREKL 1199
>At2g20460 putative retroelement pol polyprotein
Length = 1461
Score = 265 bits (677), Expect = 5e-71
Identities = 130/257 (50%), Positives = 182/257 (70%), Gaps = 1/257 (0%)
Query: 270 NIKSVLRASFKIKDLGQLKYFLGLQVAHSKQGISLCQRKYCLDLLADSGLTHSKPISTPS 329
++ L+ASFK+++LG LKYFLGL+VA + +GISL QRKY L+LL + + KP S P
Sbjct: 1160 SLTEALKASFKLRELGPLKYFLGLEVARTSEGISLSQRKYALELLTSADMLDCKPSSIPM 1219
Query: 330 DPSVKLHRDSSPPYTDISAYRRLVGRLLYLNTTRPDITFVTQQLSQFLAKRTQVHHSAAM 389
P+++L ++ D YRRLVG+L+YL TRPDITF +L QF + H +A
Sbjct: 1220 TPNIRLSKNDGLLLEDKEMYRRLVGKLMYLTITRPDITFAVNKLCQFSSAPRTAHLAAVY 1279
Query: 390 RVLKYLKTSLGKGLFFPRDSALQILGFSDADWAGCLDSRRSISGQCFFLGKSLISWRTKK 449
+VL+Y+K ++G+GLF+ + L + G++DADW C DSRRS +G F+G SLISWR+KK
Sbjct: 1280 KVLQYIKGTVGQGLFYSAEDDLTLKGYTDADWGTCPDSRRSTTGFTMFVGSSLISWRSKK 1339
Query: 450 QLIVSRSSSKEEYRALAAATCELQWLLYLLQDLQLQTSKLHVLYCDNQSALHIAANPIFH 509
Q VSRSS++ EYRALA A+CE+ WL LL L++ S + +LY D+ +A++IA NP+FH
Sbjct: 1340 QPTVSRSSAEAEYRALALASCEMAWLSTLLLALRVH-SGVPILYSDSTAAVYIATNPVFH 1398
Query: 510 ERTKHLEIDCHLVQDKL 526
ERTKH+EIDCH V++KL
Sbjct: 1399 ERTKHIEIDCHTVREKL 1415
>At2g15870 putative retroelement pol polyprotein
Length = 1264
Score = 263 bits (672), Expect = 2e-70
Identities = 132/252 (52%), Positives = 178/252 (70%), Gaps = 1/252 (0%)
Query: 275 LRASFKIKDLGQLKYFLGLQVAHSKQGISLCQRKYCLDLLADSGLTHSKPISTPSDPSVK 334
L+ FK++DLG LKYFLGL++ ++ GISLCQRKY L+LLA +G+ + K +S P P++K
Sbjct: 968 LQNLFKLRDLGDLKYFLGLEITRTEAGISLCQRKYALELLASTGMINCKLVSVPMVPNLK 1027
Query: 335 LHRDSSPPYTDISAYRRLVGRLLYLNTTRPDITFVTQQLSQFLAKRTQVHHSAAMRVLKY 394
L + D YRR+VG L+YL TRPDITF +L QF T H AA RVL+Y
Sbjct: 1028 LMKVDGELLEDREQYRRIVGTLMYLTITRPDITFAVNKLCQFSYAPTTAHLQAAHRVLQY 1087
Query: 395 LKTSLGKGLFFPRDSALQILGFSDADWAGCLDSRRSISGQCFFLGKSLISWRTKKQLIVS 454
+K ++G+GLF+ S L + GF+D+DWA C DSR S +G F+G SLIS R+KKQ +VS
Sbjct: 1088 IKGTVGQGLFYSASSDLTLKGFADSDWASCPDSRHSTTGFTMFVGDSLISLRSKKQHVVS 1147
Query: 455 RSSSKEEYRALAAATCELQWLLYLLQDLQLQTSKLHVLYCDNQSALHIAANPIFHERTKH 514
RSS++ EYRALA ATCEL WL LL L T+ + +L+ D+ +A++IA NP+FHERTKH
Sbjct: 1148 RSSAEAEYRALALATCELVWLHTLLASLTAATT-IPILFSDSTAAIYIAINPVFHERTKH 1206
Query: 515 LEIDCHLVQDKL 526
+EIDCH V++K+
Sbjct: 1207 IEIDCHTVREKI 1218
>At4g14460 retrovirus-related like polyprotein
Length = 1489
Score = 258 bits (659), Expect = 6e-69
Identities = 127/262 (48%), Positives = 175/262 (66%), Gaps = 26/262 (9%)
Query: 266 SEFNNIKSVLRASFKIKDLGQLKYFLGLQVAHSKQGISLCQRKYCLDLLADSGLTHSKPI 325
+E N+K++LR+ FKIKDLG ++FLGL KP
Sbjct: 1205 AEVENLKALLRSEFKIKDLGPARFFLGL--------------------------LGCKPS 1238
Query: 326 STPSDPSVKLHRDSSPPYTDISAYRRLVGRLLYLNTTRPDITFVTQQLSQFLAKRTQVHH 385
S P DP++ L RD P + +AYR+L+GRLLYL TRPDIT+ QLSQF++ + +H
Sbjct: 1239 SIPMDPTLHLVRDMGTPLPNPTAYRKLIGRLLYLTITRPDITYAVHQLSQFISAPSDIHL 1298
Query: 386 SAAMRVLKYLKTSLGKGLFFPRDSALQILGFSDADWAGCLDSRRSISGQCFFLGKSLISW 445
AA +VL+Y+K + G+GL + D + + GFSDADWA C D+RRSISG C +LG SLISW
Sbjct: 1299 QAAHKVLRYIKANPGQGLMYSADYEICLNGFSDADWAACKDTRRSISGFCIYLGTSLISW 1358
Query: 446 RTKKQLIVSRSSSKEEYRALAAATCELQWLLYLLQDLQLQTSKLHVLYCDNQSALHIAAN 505
++KKQ + SRSS++ EYR++A ATCE+ WL LL+DL + + L+CDN+SALH + N
Sbjct: 1359 KSKKQAVASRSSTESEYRSMAQATCEIIWLQQLLKDLHIPLTCPAKLFCDNKSALHSSLN 1418
Query: 506 PIFHERTKHLEIDCHLVQDKLQ 527
P+FHERTKH+EIDCH V+D+++
Sbjct: 1419 PVFHERTKHIEIDCHTVRDQIK 1440
>At1g26990 polyprotein, putative
Length = 1436
Score = 258 bits (659), Expect = 6e-69
Identities = 122/257 (47%), Positives = 179/257 (69%)
Query: 271 IKSVLRASFKIKDLGQLKYFLGLQVAHSKQGISLCQRKYCLDLLADSGLTHSKPISTPSD 330
+ S L + F+++DLG+ K+FLG+++A + GISLCQRKY LDLLA S + KP S P +
Sbjct: 1135 LTSQLSSFFQLRDLGEPKFFLGIEIARNADGISLCQRKYVLDLLASSDFSDCKPSSIPME 1194
Query: 331 PSVKLHRDSSPPYTDISAYRRLVGRLLYLNTTRPDITFVTQQLSQFLAKRTQVHHSAAMR 390
P+ KL +D+ D YRR++G+L YL TRPDI F +L+Q+ + T +H A +
Sbjct: 1195 PNQKLSKDTGTLLEDGKQYRRILGKLQYLCLTRPDINFAVSKLAQYSSAPTDIHLQALHK 1254
Query: 391 VLKYLKTSLGKGLFFPRDSALQILGFSDADWAGCLDSRRSISGQCFFLGKSLISWRTKKQ 450
+L+YLK ++G+GLF+ D+ + GFSD+DW C D+RR ++G F+G SL+SWR+KKQ
Sbjct: 1255 ILRYLKGTIGQGLFYGADTNFDLRGFSDSDWQTCPDTRRCVTGFAIFVGNSLVSWRSKKQ 1314
Query: 451 LIVSRSSSKEEYRALAAATCELQWLLYLLQDLQLQTSKLHVLYCDNQSALHIAANPIFHE 510
+VS SS++ EYRA++ AT EL WL Y+L ++ + LYCDN++ALHIA N +FHE
Sbjct: 1315 DVVSMSSAEAEYRAMSVATKELIWLGYILTAFKIPFTHPAYLYCDNEAALHIANNSVFHE 1374
Query: 511 RTKHLEIDCHLVQDKLQ 527
RTKH+E DCH V++ ++
Sbjct: 1375 RTKHIENDCHKVRECIE 1391
>At4g19780 putative LTR retrotransposon (fragment)
Length = 306
Score = 257 bits (656), Expect = 1e-68
Identities = 119/253 (47%), Positives = 177/253 (69%)
Query: 275 LRASFKIKDLGQLKYFLGLQVAHSKQGISLCQRKYCLDLLADSGLTHSKPISTPSDPSVK 334
L++ FK++DLG KYFLG+++A S++GIS+CQRKY L+LL+ +G SKP S P DPSVK
Sbjct: 8 LKSYFKLRDLGAAKYFLGIEIARSEKGISICQRKYILELLSTTGFLGSKPSSIPLDPSVK 67
Query: 335 LHRDSSPPYTDISAYRRLVGRLLYLNTTRPDITFVTQQLSQFLAKRTQVHHSAAMRVLKY 394
L+++ P TD ++YR+LVG+L+YL TRPDI + L QF T VH +A +VL+Y
Sbjct: 68 LNKEDGVPLTDSTSYRKLVGKLMYLQITRPDIAYAVNTLCQFSHAPTSVHLNAVHKVLRY 127
Query: 395 LKTSLGKGLFFPRDSALQILGFSDADWAGCLDSRRSISGQCFFLGKSLISWRTKKQLIVS 454
LK ++G+GLF+P D + G++D+D+ C DSRR ++ C F+G SL+SW++KKQ VS
Sbjct: 128 LKGTVGQGLFYPADDKFDLRGYTDSDFGSCTDSRRCVAAYCMFIGDSLVSWKSKKQDTVS 187
Query: 455 RSSSKEEYRALAAATCELQWLLYLLQDLQLQTSKLHVLYCDNQSALHIAANPIFHERTKH 514
S+++ E+RA++ T E+ WL LL D ++ LY DN +ALHI N +FHERTK
Sbjct: 188 MSTAEAEFRAMSQGTKEMIWLSRLLDDFKVPFIPPAYLYSDNTAALHIVNNSVFHERTKF 247
Query: 515 LEIDCHLVQDKLQ 527
+E+DC+ ++ ++
Sbjct: 248 VELDCYKTREAVE 260
>At4g17450 retrotransposon like protein
Length = 1433
Score = 255 bits (651), Expect = 5e-68
Identities = 118/253 (46%), Positives = 175/253 (68%)
Query: 275 LRASFKIKDLGQLKYFLGLQVAHSKQGISLCQRKYCLDLLADSGLTHSKPISTPSDPSVK 334
L++ FK++DLG KYFLG+++A S++GIS+CQRKY L+LL+ +G SKP S P DPSVK
Sbjct: 1135 LKSYFKLRDLGAAKYFLGIEIARSEKGISICQRKYILELLSTTGFLGSKPSSIPLDPSVK 1194
Query: 335 LHRDSSPPYTDISAYRRLVGRLLYLNTTRPDITFVTQQLSQFLAKRTQVHHSAAMRVLKY 394
L+++ P TD ++YR+LVG+L+YL TRPDI + L QF T VH SA +VL+Y
Sbjct: 1195 LNKEDGVPLTDSTSYRKLVGKLMYLQITRPDIAYAVNTLCQFSHAPTSVHLSAVHKVLRY 1254
Query: 395 LKTSLGKGLFFPRDSALQILGFSDADWAGCLDSRRSISGQCFFLGKSLISWRTKKQLIVS 454
LK ++G+GLF+ D + G++D+D+ C DSRR ++ C F+G L+SW++KKQ VS
Sbjct: 1255 LKGTVGQGLFYSADDKFDLRGYTDSDFGSCTDSRRCVAAYCMFIGDYLVSWKSKKQDTVS 1314
Query: 455 RSSSKEEYRALAAATCELQWLLYLLQDLQLQTSKLHVLYCDNQSALHIAANPIFHERTKH 514
S+++ E+RA++ T E+ WL L D ++ LYCDN +ALHI N +FHERTK
Sbjct: 1315 MSTAEAEFRAMSQGTKEMIWLSRLFDDFKVPFIPPAYLYCDNTAALHIVNNSVFHERTKF 1374
Query: 515 LEIDCHLVQDKLQ 527
+E+DC+ ++ ++
Sbjct: 1375 VELDCYKTREAVE 1387
>At2g13940 putative retroelement pol polyprotein
Length = 1501
Score = 245 bits (625), Expect = 5e-65
Identities = 124/256 (48%), Positives = 172/256 (66%)
Query: 272 KSVLRASFKIKDLGQLKYFLGLQVAHSKQGISLCQRKYCLDLLADSGLTHSKPISTPSDP 331
K L F +KDLG+LKYFLG++V+ +GI L QRKY LD++ADSG S+P TP +
Sbjct: 1202 KDYLSRCFSMKDLGKLKYFLGIEVSRGPEGIFLSQRKYALDVIADSGNLGSRPAHTPLEQ 1261
Query: 332 SVKLHRDSSPPYTDISAYRRLVGRLLYLNTTRPDITFVTQQLSQFLAKRTQVHHSAAMRV 391
+ L D P +D YRRLVGRLLYL TRP++++ L+QF+ + H AA+RV
Sbjct: 1262 NHHLASDDGPLLSDPKPYRRLVGRLLYLLHTRPELSYSVHVLAQFMQNPREAHFDAALRV 1321
Query: 392 LKYLKTSLGKGLFFPRDSALQILGFSDADWAGCLDSRRSISGQCFFLGKSLISWRTKKQL 451
++YLK S G+G+ D L + + D+DW C +RRSIS LG S ISW+TKKQ
Sbjct: 1322 VRYLKGSPGQGILLNADPDLTLEVYCDSDWQSCPLTRRSISAYVVLLGGSPISWKTKKQD 1381
Query: 452 IVSRSSSKEEYRALAAATCELQWLLYLLQDLQLQTSKLHVLYCDNQSALHIAANPIFHER 511
VS SS++ EYRA++ A E++WL LL++L ++ S LYCD+++A+HIAANP+FHER
Sbjct: 1382 TVSHSSAEAEYRAMSYALKEIKWLRKLLKELGIEQSTPARLYCDSKAAIHIAANPVFHER 1441
Query: 512 TKHLEIDCHLVQDKLQ 527
TKH+E DCH V+D ++
Sbjct: 1442 TKHIESDCHSVRDAVR 1457
>At2g16670 putative retroelement pol polyprotein
Length = 1333
Score = 239 bits (610), Expect = 3e-63
Identities = 122/254 (48%), Positives = 171/254 (67%)
Query: 272 KSVLRASFKIKDLGQLKYFLGLQVAHSKQGISLCQRKYCLDLLADSGLTHSKPISTPSDP 331
K L + F +KDLG LKYFLG++VA S GI +CQRKY LD+++++GL KP + P +
Sbjct: 1034 KEYLASCFHMKDLGPLKYFLGIEVARSTTGIYICQRKYALDIISETGLLGVKPANFPLEQ 1093
Query: 332 SVKLHRDSSPPYTDISAYRRLVGRLLYLNTTRPDITFVTQQLSQFLAKRTQVHHSAAMRV 391
+ KL +SP TD YRRLVGRL+YL TR D+ F L++F+ + + H +AA+RV
Sbjct: 1094 NHKLGLSTSPLLTDPQRYRRLVGRLIYLAVTRLDLAFSVHILARFMQEPREDHWAAALRV 1153
Query: 392 LKYLKTSLGKGLFFPRDSALQILGFSDADWAGCLDSRRSISGQCFFLGKSLISWRTKKQL 451
++YLK G+G+F R QI G+ D+DWAG SRRS++G G S ISW+TKKQ
Sbjct: 1154 VRYLKADPGQGVFLRRSGDFQITGWCDSDWAGDPMSRRSVTGYFVQFGDSPISWKTKKQD 1213
Query: 452 IVSRSSSKEEYRALAAATCELQWLLYLLQDLQLQTSKLHVLYCDNQSALHIAANPIFHER 511
VS+SS++ EYRA++ EL WL LL L + + ++ CD++SA++IA NP+FHER
Sbjct: 1214 TVSKSSAEAEYRAMSFLASELLWLKQLLFSLGVSHVQPMIMCCDSKSAIYIATNPVFHER 1273
Query: 512 TKHLEIDCHLVQDK 525
TKH+EID H V+D+
Sbjct: 1274 TKHIEIDYHFVRDE 1287
>At2g23330 putative retroelement pol polyprotein
Length = 1496
Score = 238 bits (607), Expect = 6e-63
Identities = 122/256 (47%), Positives = 169/256 (65%)
Query: 269 NNIKSVLRASFKIKDLGQLKYFLGLQVAHSKQGISLCQRKYCLDLLADSGLTHSKPISTP 328
+ KS L F +KDLG+LKYFLGL+V+ G L QRKY LD++ ++GL KP + P
Sbjct: 1194 DRFKSQLHKCFHMKDLGKLKYFLGLEVSRGPDGFCLSQRKYALDIVKETGLLGCKPSAVP 1253
Query: 329 SDPSVKLHRDSSPPYTDISAYRRLVGRLLYLNTTRPDITFVTQQLSQFLAKRTQVHHSAA 388
+ KL + P +T+ YRRLVGR +YL TRPD+++ LSQF+ H AA
Sbjct: 1254 IALNHKLASITGPVFTNPEQYRRLVGRFIYLTITRPDLSYAVHILSQFMQAPLVAHWEAA 1313
Query: 389 MRVLKYLKTSLGKGLFFPRDSALQILGFSDADWAGCLDSRRSISGQCFFLGKSLISWRTK 448
+R+++YLK S +G+F DS+L I + D+D+ C +RRS+S +LG S ISW+TK
Sbjct: 1314 LRLVRYLKGSPAQGIFLRSDSSLIINAYCDSDYNACPLTRRSLSAYVVYLGDSPISWKTK 1373
Query: 449 KQLIVSRSSSKEEYRALAAATCELQWLLYLLQDLQLQTSKLHVLYCDNQSALHIAANPIF 508
KQ VS SS++ EYRA+A EL+WL LL+DL + S L+CD+++A+HIAANP+F
Sbjct: 1374 KQDTVSYSSAEAEYRAMAYTLKELKWLKALLKDLGVHHSSPMKLHCDSEAAIHIAANPVF 1433
Query: 509 HERTKHLEIDCHLVQD 524
HERTKH+E DCH V+D
Sbjct: 1434 HERTKHIESDCHKVRD 1449
>At4g22040 LTR retrotransposon like protein
Length = 1109
Score = 235 bits (599), Expect = 5e-62
Identities = 116/255 (45%), Positives = 176/255 (68%)
Query: 272 KSVLRASFKIKDLGQLKYFLGLQVAHSKQGISLCQRKYCLDLLADSGLTHSKPISTPSDP 331
KS L + F +KDLG LKYFLG++V+ + QG L QRKY LD++++ GL ++P + P +
Sbjct: 810 KSYLESCFHMKDLGLLKYFLGIEVSRNAQGFYLSQRKYVLDIISEMGLLGARPSAFPLEQ 869
Query: 332 SVKLHRDSSPPYTDISAYRRLVGRLLYLNTTRPDITFVTQQLSQFLAKRTQVHHSAAMRV 391
+ KL +SP +D S YRRLVGRL+YL TRP++++ L+QF+ Q H +AA+RV
Sbjct: 870 NHKLSLSTSPLLSDSSRYRRLVGRLIYLAVTRPELSYSVHTLAQFMQNPRQDHWNAAIRV 929
Query: 392 LKYLKTSLGKGLFFPRDSALQILGFSDADWAGCLDSRRSISGQCFFLGKSLISWRTKKQL 451
++YLK++ G+G+ S LQI G+ D+D+A C +RRS++G LG + ISW+TKKQ
Sbjct: 930 VRYLKSNPGQGILLSSTSTLQINGWCDSDYAACPLTRRSLTGYFVQLGDTPISWKTKKQP 989
Query: 452 IVSRSSSKEEYRALAAATCELQWLLYLLQDLQLQTSKLHVLYCDNQSALHIAANPIFHER 511
+SRSS++ EYRA+A T EL WL +L DL + + ++ D++SA+ ++ NP+ HER
Sbjct: 990 TISRSSAEAEYRAMAFLTQELMWLKRVLYDLGVSHVQAMRIFSDSKSAIALSVNPVQHER 1049
Query: 512 TKHLEIDCHLVQDKL 526
TKH+E+DCH ++D +
Sbjct: 1050 TKHVEVDCHFIRDAI 1064
>At1g57640
Length = 1444
Score = 235 bits (599), Expect = 5e-62
Identities = 117/255 (45%), Positives = 176/255 (68%)
Query: 272 KSVLRASFKIKDLGQLKYFLGLQVAHSKQGISLCQRKYCLDLLADSGLTHSKPISTPSDP 331
KS L + F +KDLG LKYFLG++V+ + QG L QRKY LD++++ GL ++P + P +
Sbjct: 1145 KSYLESCFHMKDLGLLKYFLGIEVSRNAQGFYLSQRKYVLDIISEMGLLGARPSAFPLEQ 1204
Query: 332 SVKLHRDSSPPYTDISAYRRLVGRLLYLNTTRPDITFVTQQLSQFLAKRTQVHHSAAMRV 391
+ KL +SP +D S YRRLVGRL+YL TRP++++ L+QF+ Q H +AA+RV
Sbjct: 1205 NHKLSLSTSPLLSDSSRYRRLVGRLIYLVVTRPELSYSVHTLAQFMQNPRQDHWNAAIRV 1264
Query: 392 LKYLKTSLGKGLFFPRDSALQILGFSDADWAGCLDSRRSISGQCFFLGKSLISWRTKKQL 451
++YLK++ G+G+ S LQI G+ D+D+A C +RRS++G LG + ISW+TKKQ
Sbjct: 1265 VRYLKSNPGQGILLSSTSTLQINGWCDSDYAACPLTRRSLTGYFVQLGDTPISWKTKKQP 1324
Query: 452 IVSRSSSKEEYRALAAATCELQWLLYLLQDLQLQTSKLHVLYCDNQSALHIAANPIFHER 511
VSRSS++ EYRA+A T EL WL +L DL + + ++ D++SA+ ++ NP+ HER
Sbjct: 1325 TVSRSSAEAEYRAMAFLTQELMWLKRVLYDLGVSHVQAMRIFSDSKSAIALSVNPVQHER 1384
Query: 512 TKHLEIDCHLVQDKL 526
TKH+E+DCH ++D +
Sbjct: 1385 TKHVEVDCHFIRDAI 1399
>At2g06840 putative retroelement pol polyprotein
Length = 1102
Score = 228 bits (580), Expect = 8e-60
Identities = 115/262 (43%), Positives = 170/262 (63%), Gaps = 6/262 (2%)
Query: 269 NNIKSV------LRASFKIKDLGQLKYFLGLQVAHSKQGISLCQRKYCLDLLADSGLTHS 322
NN+K++ L F +KDLG+LKYFLGL+V+ G L Q+KY LD++ ++GL
Sbjct: 798 NNLKAIDHFKEHLHKCFHMKDLGKLKYFLGLEVSRGADGFCLSQQKYALDIINEAGLLGY 857
Query: 323 KPISTPSDPSVKLHRDSSPPYTDISAYRRLVGRLLYLNTTRPDITFVTQQLSQFLAKRTQ 382
KP + P + KL SSP + + + YRRLV R +YL TRPD+++ LSQF+ +
Sbjct: 858 KPSAVPMELHHKLGSISSPVFDNPAQYRRLVDRFIYLTITRPDLSYAVHILSQFMQTPLE 917
Query: 383 VHHSAAMRVLKYLKTSLGKGLFFPRDSALQILGFSDADWAGCLDSRRSISGQCFFLGKSL 442
H A +R+++YLK S +G+ D AL + + D+D+ C +RRS+S +LG +
Sbjct: 918 AHWHATLRLVRYLKGSPDQGILLRSDRALSLTAYCDSDYNPCPRTRRSLSAYVLYLGDTP 977
Query: 443 ISWRTKKQLIVSRSSSKEEYRALAAATCELQWLLYLLQDLQLQTSKLHVLYCDNQSALHI 502
ISW+TKKQ VS SS++ EYRA+A E++WL L+ L + ++ +L+CD+Q+A+HI
Sbjct: 978 ISWKTKKQDTVSSSSAEAEYRAMAYTLKEIKWLKALMTTLGVDHTQPILLFCDSQAAIHI 1037
Query: 503 AANPIFHERTKHLEIDCHLVQD 524
AANP+FHERTKH+E DCH V+D
Sbjct: 1038 AANPVFHERTKHIEKDCHQVRD 1059
>At2g15920 putative retroelement pol polyprotein
Length = 1100
Score = 224 bits (571), Expect = 9e-59
Identities = 121/248 (48%), Positives = 164/248 (65%), Gaps = 13/248 (5%)
Query: 279 FKIKDLGQLKYFLGLQVAHSKQGISLCQRKYCLDLLADSGLTHSKPISTPSDPSVKLHRD 338
FK++DLG LKYFL L+++ ++ GISLC RK +LLA G+ + KP+S P +VKL +
Sbjct: 816 FKLRDLGDLKYFLCLEISRTEVGISLCHRKNAWELLASIGMINCKPVSVPMITNVKLMKA 875
Query: 339 SSPPYTDISAYRRLVGRLLYLNTTRPDITFVTQQLSQFLAKRTQVHHSAAMRVLKYLKTS 398
D YRR+VG+L+ L TRPDIT T H AA RVL+Y+K
Sbjct: 876 DGELLEDREQYRRIVGKLMDLTITRPDITLRT------------THLQAAHRVLQYIKGI 923
Query: 399 LGKGLFFPRDSALQILGFSDADWAGCLDSRRSISGQCFFLGKSLISWRTKKQLIVSRSSS 458
+G+GLF+ S L + GF+D+DW C DSRRS +G F+G SLIS R+KKQ +VSRSS+
Sbjct: 924 VGQGLFYSASSDLTLKGFADSDWVSCADSRRSTTGFTMFVGDSLISLRSKKQRVVSRSSA 983
Query: 459 KEEYRALAAATCELQWLLYLLQDLQLQTSKLHVLYCDNQSALHIAANPIFHERTKHLEID 518
+ EYRALA ATCEL L LL L TS + +L+ ++ +A++IA NP+FHERTKH EID
Sbjct: 984 EAEYRALALATCELVSLHTLLVSLTAATS-VPILFSNSTTAIYIAINPVFHERTKHTEID 1042
Query: 519 CHLVQDKL 526
C+ V++K+
Sbjct: 1043 CNTVREKV 1050
>At2g04820 putative retroelement pol polyprotein
Length = 387
Score = 221 bits (562), Expect = 1e-57
Identities = 114/258 (44%), Positives = 153/258 (59%)
Query: 270 NIKSVLRASFKIKDLGQLKYFLGLQVAHSKQGISLCQRKYCLDLLADSGLTHSKPISTPS 329
N L F +KDLG L YFLG++ +K+G+ L QRKY DLLA + + +KPISTP
Sbjct: 87 NFNVSLADRFSLKDLGALSYFLGIEATRTKKGLHLMQRKYITDLLAKTHMLDAKPISTPM 146
Query: 330 DPSVKLHRDSSPPYTDISAYRRLVGRLLYLNTTRPDITFVTQQLSQFLAKRTQVHHSAAM 389
+ KL S D YR ++G L YL+ TRPDI FV +LSQF+ K T H AA
Sbjct: 147 ATTPKLSLHSGTILDDAKEYRMIIGSLQYLSFTRPDIAFVVNRLSQFMHKPTDEHWQAAK 206
Query: 390 RVLKYLKTSLGKGLFFPRDSALQILGFSDADWAGCLDSRRSISGQCFFLGKSLISWRTKK 449
RVL+YL + G+F D+ L + FSDADWAG L S + + G S ISW +KK
Sbjct: 207 RVLRYLAGTKSHGIFLRSDAPLTVHSFSDADWAGDLGDGLSTNAYIVYFGGSPISWSSKK 266
Query: 450 QLIVSRSSSKEEYRALAAATCELQWLLYLLQDLQLQTSKLHVLYCDNQSALHIAANPIFH 509
Q SRSS++ EYRA+A ELQW+ LL ++ + V+YCDN A ++ ANP+FH
Sbjct: 267 QRRFSRSSTEAEYRAVANTASELQWICSLLSEMGISLPVAPVVYCDNMGATYLCANPVFH 326
Query: 510 ERTKHLEIDCHLVQDKLQ 527
+ KH+ +D H V+ +Q
Sbjct: 327 SKMKHVALDYHFVRGNIQ 344
>At1g59265 polyprotein, putative
Length = 1466
Score = 212 bits (539), Expect = 5e-55
Identities = 107/264 (40%), Positives = 162/264 (60%), Gaps = 4/264 (1%)
Query: 264 IHSEFNNIKSVLRASFKIKDLGQLKYFLGLQVAHSKQGISLCQRKYCLDLLADSGLTHSK 323
+H+ +N+ F +KD +L YFLG++ G+ L QR+Y LDLLA + + +K
Sbjct: 1164 LHNTLDNLSQ----RFSVKDHEELHYFLGIEAKRVPTGLHLSQRRYILDLLARTNMITAK 1219
Query: 324 PISTPSDPSVKLHRDSSPPYTDISAYRRLVGRLLYLNTTRPDITFVTQQLSQFLAKRTQV 383
P++TP PS KL S TD + YR +VG L YL TRPDI++ +LSQF+ T+
Sbjct: 1220 PVTTPMAPSPKLSLYSGTKLTDPTEYRGIVGSLQYLAFTRPDISYAVNRLSQFMHMPTEE 1279
Query: 384 HHSAAMRVLKYLKTSLGKGLFFPRDSALQILGFSDADWAGCLDSRRSISGQCFFLGKSLI 443
H A R+L+YL + G+F + + L + +SDADWAG D S +G +LG I
Sbjct: 1280 HLQALKRILRYLAGTPNHGIFLKKGNTLSLHAYSDADWAGDKDDYVSTNGYIVYLGHHPI 1339
Query: 444 SWRTKKQLIVSRSSSKEEYRALAAATCELQWLLYLLQDLQLQTSKLHVLYCDNQSALHIA 503
SW +KKQ V RSS++ EYR++A + E+QW+ LL +L ++ ++ V+YCDN A ++
Sbjct: 1340 SWSSKKQKGVVRSSTEAEYRSVANTSSEMQWICSLLTELGIRLTRPPVIYCDNVGATYLC 1399
Query: 504 ANPIFHERTKHLEIDCHLVQDKLQ 527
ANP+FH R KH+ ID H +++++Q
Sbjct: 1400 ANPVFHSRMKHIAIDYHFIRNQVQ 1423
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.355 0.156 0.561
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,527,910
Number of Sequences: 26719
Number of extensions: 407587
Number of successful extensions: 2450
Number of sequences better than 10.0: 94
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 2257
Number of HSP's gapped (non-prelim): 131
length of query: 527
length of database: 11,318,596
effective HSP length: 104
effective length of query: 423
effective length of database: 8,539,820
effective search space: 3612343860
effective search space used: 3612343860
T: 11
A: 40
X1: 14 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.6 bits)
S2: 62 (28.5 bits)
Medicago: description of AC123574.1