BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC122728.13 + phase: 0
(164 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g09310 putative protein 36 0.011
At4g09250 putative protein 36 0.011
At4g09200 putative protein 36 0.011
At5g02390 putative protein 29 0.99
At2g03810 unknown protein 28 2.2
At4g34280 unknown protein 28 2.9
At2g33350 hypothetical protein 27 3.8
At4g21470 unknown protein 26 8.4
At3g08670 hypothetical protein 26 8.4
>At4g09310 putative protein
Length = 349
Score = 35.8 bits (81), Expect = 0.011
Identities = 21/64 (32%), Positives = 35/64 (53%), Gaps = 5/64 (7%)
Query: 15 TDKVIGCGFDPRQKKVFFTLDSELMHVVHCQTEEFSTPLYPTLAANI-DIMVLVNF-GQN 72
T ++GCG D ++ FFT + ++ + +F P+YPT+ + + V VNF GQ
Sbjct: 122 TGDLVGCGIDSVSQEFFFTKNGTIVGTI---PRQFRRPVYPTIVLHSQNEAVTVNFGGQI 178
Query: 73 AFKY 76
AF +
Sbjct: 179 AFSF 182
>At4g09250 putative protein
Length = 427
Score = 35.8 bits (81), Expect = 0.011
Identities = 21/64 (32%), Positives = 35/64 (53%), Gaps = 5/64 (7%)
Query: 15 TDKVIGCGFDPRQKKVFFTLDSELMHVVHCQTEEFSTPLYPTLAANI-DIMVLVNF-GQN 72
T ++GCG D ++ FFT + ++ + +F P+YPT+ + + V VNF GQ
Sbjct: 200 TGDLVGCGIDSVSQEFFFTKNGTIVGTI---PRQFRRPVYPTIVLHSQNEAVTVNFGGQI 256
Query: 73 AFKY 76
AF +
Sbjct: 257 AFSF 260
>At4g09200 putative protein
Length = 377
Score = 35.8 bits (81), Expect = 0.011
Identities = 21/64 (32%), Positives = 35/64 (53%), Gaps = 5/64 (7%)
Query: 15 TDKVIGCGFDPRQKKVFFTLDSELMHVVHCQTEEFSTPLYPTLAANI-DIMVLVNF-GQN 72
T ++GCG D ++ FFT + ++ + +F P+YPT+ + + V VNF GQ
Sbjct: 118 TGDLVGCGIDSVSQEFFFTKNGTIVGTI---PRQFRRPVYPTIVLHSQNEAVTVNFGGQI 174
Query: 73 AFKY 76
AF +
Sbjct: 175 AFSF 178
>At5g02390 putative protein
Length = 835
Score = 29.3 bits (64), Expect = 0.99
Identities = 17/61 (27%), Positives = 33/61 (53%), Gaps = 2/61 (3%)
Query: 103 DDDSKELFSMGRIDSHWLNRTTTKGSHNNGNNISTMDFDEESEADLFEIVIDGSRKSPST 162
D ++++ + +D R+ + S + NN+ST+D DE A +F+I D ++ ST
Sbjct: 589 DAETEQDREISTLDVEHETRSLKESSEESPNNVSTVDIDE--NASVFDISRDLDTETVST 646
Query: 163 T 163
+
Sbjct: 647 S 647
>At2g03810 unknown protein
Length = 439
Score = 28.1 bits (61), Expect = 2.2
Identities = 23/66 (34%), Positives = 36/66 (53%), Gaps = 9/66 (13%)
Query: 99 AIGYDDDSKELFSMGRIDSHWLNRTTTKGSHNNGNNISTMDFDEESEADLFEIVIDGSRK 158
AI D+DSKE ++G I L+R + S N +NIS+ +E+S + L D ++
Sbjct: 237 AISQDNDSKECLTLGDI----LSREDEQKSLNQ-DNISSDSHEEQSPSQL----QDKEKR 287
Query: 159 SPSTTS 164
S TT+
Sbjct: 288 SLETTA 293
>At4g34280 unknown protein
Length = 783
Score = 27.7 bits (60), Expect = 2.9
Identities = 24/89 (26%), Positives = 41/89 (45%), Gaps = 3/89 (3%)
Query: 66 LVNFGQNAFKYAPANAQRTPNPCLVSPLVSSPAAIGYDDDSKEL---FSMGRIDSHWLNR 122
+V FG++ F P + LVS L +S AA+ KEL + DS LN
Sbjct: 160 IVGFGEDCFSCMPKLTYLSMCDTLVSDLWTSAAALLKLPSLKELRFQIWISCSDSSPLNS 219
Query: 123 TTTKGSHNNGNNISTMDFDEESEADLFEI 151
++ S + + ++ D EAD++++
Sbjct: 220 ESSPSSSTKDDINTFIESDPPVEADMWDV 248
>At2g33350 hypothetical protein
Length = 440
Score = 27.3 bits (59), Expect = 3.8
Identities = 19/52 (36%), Positives = 26/52 (49%), Gaps = 4/52 (7%)
Query: 106 SKELFSMGRIDSHWLNRTTTKGSHNNGNNISTM---DFDEESEADLFEIVID 154
S L G S+ TTT+ S+NN NN +T D D+ + DL I+ D
Sbjct: 80 SNILEKSGSFHSNTNTTTTTENSNNNNNNKNTNLQDDEDDNNNTDL-SIIFD 130
>At4g21470 unknown protein
Length = 379
Score = 26.2 bits (56), Expect = 8.4
Identities = 14/52 (26%), Positives = 24/52 (45%), Gaps = 4/52 (7%)
Query: 11 EWIGTDKVIGCGFDPRQKKVFFTLDSELMHVVHCQTEEFSTPLYPTLAANID 62
+W G + + G P + D EL C+ +EF++ YP +A +D
Sbjct: 43 QWDGRESLKIVGKTPVEAATTIVEDYELP----CKVDEFNSEFYPLFSAQMD 90
>At3g08670 hypothetical protein
Length = 567
Score = 26.2 bits (56), Expect = 8.4
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 126 KGSHNNGNNISTMDFDEESEADL 148
+G++NN NNIS F +S+ +L
Sbjct: 23 RGNNNNSNNISQNGFSRDSDENL 45
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.316 0.132 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,967,691
Number of Sequences: 26719
Number of extensions: 169741
Number of successful extensions: 403
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 400
Number of HSP's gapped (non-prelim): 9
length of query: 164
length of database: 11,318,596
effective HSP length: 92
effective length of query: 72
effective length of database: 8,860,448
effective search space: 637952256
effective search space used: 637952256
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)
Medicago: description of AC122728.13