BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC122728.10 + phase: 0
(2239 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g20390 hypothetical protein 754 0.0
At3g31530 hypothetical protein 458 e-128
At2g15410 putative retroelement pol polyprotein 402 e-111
At2g13330 F14O4.9 381 e-105
At2g14400 putative retroelement pol polyprotein 324 3e-88
At2g14380 putative retroelement pol polyprotein 293 1e-78
At1g37200 hypothetical protein 287 6e-77
At4g03800 274 4e-73
At1g37060 Athila retroelment ORF 1, putative 271 4e-72
At2g10780 pseudogene 266 1e-70
At2g15100 putative retroelement pol polyprotein 264 5e-70
At4g10580 putative reverse-transcriptase -like protein 263 9e-70
At2g04670 putative retroelement pol polyprotein 259 2e-68
At3g11970 hypothetical protein 251 4e-66
At2g07660 putative retroelement pol polyprotein 251 4e-66
At1g36590 hypothetical protein 251 4e-66
At2g14650 putative retroelement pol polyprotein 249 1e-65
At1g35370 hypothetical protein 241 5e-63
At2g14040 putative retroelement pol polyprotein 236 9e-62
At2g06320 putative retroelement pol polyprotein 205 2e-52
>At1g20390 hypothetical protein
Length = 1791
Score = 754 bits (1948), Expect = 0.0
Identities = 424/1113 (38%), Positives = 626/1113 (56%), Gaps = 41/1113 (3%)
Query: 1133 ELINIGTEENKREIKIGATLEEGVKQKIIQLLREYPDIFAWSYEDMPGLDPMIVEHRIPT 1192
E++NI + R + +GA + ++ ++I LL+ FAWS EDM G+DP I H +
Sbjct: 712 EMVNIDESDPTRCVGVGAEISPSIRLELIALLKRNSKTFAWSIEDMKGIDPAITAHELNV 771
Query: 1193 KPECPPVRQKLRRTHPDMALKIKSEVQKQIDAGFLMTVEYPEWVANIVPVPKKDGKVRMC 1252
P PV+QK R+ P+ A + EV+K + AG ++ V+YPEW+AN V V KK+GK R+C
Sbjct: 772 DPTFKPVKQKRRKLGPERARAVNEEVEKLLKAGQIIEVKYPEWLANPVVVKKKNGKWRVC 831
Query: 1253 VDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREKTSFITP 1312
VD+ DLNKA PKD++PLPHID LV+ T+ + + SFMD FSGYNQI M +D+EKTSF+T
Sbjct: 832 VDYTDLNKACPKDSYPLPHIDRLVEATSGNGLLSFMDAFSGYNQILMHKDDQEKTSFVTD 891
Query: 1313 WGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSADEEQHVEYLTKM 1372
GT+CYKVM FGL NAGATYQR + + D I + VEVY+DDM+VKS E HVE+L+K
Sbjct: 892 RGTYCYKVMSFGLKNAGATYQRFVNKMLADQIGRTVEVYIDDMLVKSLKPEDHVEHLSKC 951
Query: 1373 FERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGF 1432
F+ L Y ++LNP KCTFGV SG+ LG++V+++GIE +P ++RAI E+P+P+ ++V+
Sbjct: 952 FDVLNTYGMKLNPTKCTFGVTSGEFLGYVVTKRGIEANPKQIRAILELPSPRNAREVQRL 1011
Query: 1433 LGRLNYISRFISHMTATCGPIFKLLRKNQPIVWNDECQEAFDSIKNYLLEPPILVPPVEG 1492
GR+ ++RFIS T C P + LL++ W+ + +EAF+ +K+YL PPILV P G
Sbjct: 1012 TGRIAALNRFISRSTDKCLPFYNLLKRRAQFDWDKDSEEAFEKLKDYLSTPPILVKPEVG 1071
Query: 1493 RPLIMYLAVFDESMGCVLGQQDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALAWAAK 1552
L +Y+AV D ++ VL ++D ++ I+Y SK + ETRY ++EK A+ +A+
Sbjct: 1072 ETLYLYIAVSDHAVSSVLVREDR--GEQRPIFYTSKSLVEAETRYPVIEKAALAVVTSAR 1129
Query: 1553 RLRHYLVNHTTWLISRMDPIKYIFEKAAVTGKIARWQMLLSEYDIVFKTQKAIKGSILAD 1612
+LR Y +HT +++ P++ + +G++ +W + LSEYDI F+ + A+K +LAD
Sbjct: 1130 KLRPYFQSHTIAVLTD-QPLRVALHSPSQSGRMTKWAVELSEYDIDFRPRPAMKSQVLAD 1188
Query: 1613 HLAYQPLDDYQLIEFDFPDEEIMYLKSKDCEEPLINEGPDPNSKWGLVFDGAVNAYGKGM 1672
L PL + EE W L DG+ +A G G+
Sbjct: 1189 FLIELPLQSAERAVSGNRGEE-----------------------WSLYVDGSSSARGSGI 1225
Query: 1673 GAVIVSPQGHHIPFTARILFECTNNMAEYEACIFGIEEAIDMRIKHLDIYGDSALVINQI 1732
G +VSP + + R+ F TNN+AEYE I G+ A M+I + + DS L+ Q+
Sbjct: 1226 GIRLVSPTAEVLEQSFRLRFVATNNVAEYEVLIAGLRLAAGMQITTIHAFTDSQLIAGQL 1285
Query: 1733 KGEWETHHAKLIPYHDYARRLLTYFTKVELHHIPRDENQMADALATLSSMFRVNHWNDVP 1792
GE+E + K+ Y + + F +L IPR +N ADALA L+ + +P
Sbjct: 1286 SGEYEAKNEKMDAYLKIVQLMTKDFENFKLSKIPRGDNAPADALAALALTSDSDLRRIIP 1345
Query: 1793 I--IKGQRLERPSHVFAIGDVIDQAGENVVGYRPWYYDIKQFLLSREYPPGASKQDKKTL 1850
+ I ++ V + + + W +I+ +L G DK T
Sbjct: 1346 VESIDKPSIDSTDAVEIVNTIRSSNAPDPADPTDWRVEIRDYL-----SDGTLPSDKWTA 1400
Query: 1851 RRL---AGRFLLDGDILYKRNYDMVLLRCVDEHEAEQLVHDVHDGTFGTHATGHTMSRKL 1907
RRL A ++ L + L K + +L C+ E +++ + H+G G H+ G ++ KL
Sbjct: 1401 RRLRIKAAKYTLMKEHLLKVSAFGAMLNCLHGTEINEIMKETHEGAAGNHSGGRALALKL 1460
Query: 1908 LRAGYYWMAMEHDCYQYARKCHKCQIYADKIHVPPHALNVMSSPWPFSMWGIDMIGRIEP 1967
+ G+YW M DC + KC +CQ +A IH P L +P+PF W +D++G +
Sbjct: 1461 KKLGFYWPTMISDCKTFTAKCEQCQRHAPTIHQPTELLRAGVAPYPFMRWAMDIVGPM-- 1518
Query: 1968 KASNGHRFILVAIDYFTKWVEAASYTNVTKQVVAKFIKNNIICRYGVPSKIITDNGTNLN 2027
AS RFILV DYFTKWVEA SY + V F+ IICR+G+P +IITDNG+
Sbjct: 1519 PASRQKRFILVMTDYFTKWVEAESYATIRANDVQNFVWKFIICRHGLPYEIITDNGSQFI 1578
Query: 2028 NNVVQALCEEFKIEHHNSSPYRPQMNGAVEAANKNIKRIVQKMVTTYKD-WHEMLPYALH 2086
+ + C +KI + S+P PQ NG EA NK I ++K + K W + L L
Sbjct: 1579 SLSFENFCASWKIRLNKSTPRYPQGNGQAEATNKTILSGLKKRLDEKKGAWADELDGVLW 1638
Query: 2087 GYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEE 2146
YRTT RS+T TPF+ YGMEA+ P EV SLR M K E + D+L+ +EE
Sbjct: 1639 SYRTTPRSATDQTPFAHAYGMEAMAPAEVGYSSLRRSMMVKNPELN-DRMMLDRLDDLEE 1697
Query: 2147 KRMDAMARGHSYQARMKAAFDKKVNPREFKVGELVLKRRISQQPD-PRGKWTPNYEGPYV 2205
R A+ R +YQ +++KV+ R F VG+LVL++ + GK N+EG Y
Sbjct: 1698 IRNAALCRIQNYQLAAAKHYNQKVHNRHFDVGDLVLRKVFENTAEINAGKLGANWEGSYQ 1757
Query: 2206 VKKAFSGGALILTHMDGVELPNPVNADIVKKYF 2238
V K G L M G +P N+ +K+Y+
Sbjct: 1758 VSKIVRPGDYELLTMSGTAVPRTWNSMHLKRYY 1790
Score = 76.6 bits (187), Expect = 1e-13
Identities = 51/180 (28%), Positives = 85/180 (46%), Gaps = 7/180 (3%)
Query: 807 FSEEELPEVGKSHNLALHISLNCKSDMISNVLVDTGSSLNVMPKTTLDQLSYRGTPLRRS 866
F++ +L + HN L + L ++ VL+DTGSS++++ K L ++ ++
Sbjct: 555 FTDVDLEGLDTPHNDPLVVELIISDSRVTRVLIDTGSSVDLIFKDVLTAMNITDRQIKPV 614
Query: 867 TFLVKAFDGSRKNVLGEIDLPITIGPENFLVTFQVMDINASYSCLLGRPWIHDAGAVTST 926
+ + FDG +G I LPI +G V F V+ A Y+ +LG PWIH A+ ST
Sbjct: 615 SKPLAGFDGDFVMTIGTIKLPIFVGGLIAWVKFVVIGKPAVYNVILGTPWIHQMQAIPST 674
Query: 927 LHQKLKFVKNGKLVTIHG-------EEAYLVSQLSSFSCVEAGSAEGTAFQGLTIESAES 979
HQ +KF + + T+ +Y S+L V ++ T G+ E + S
Sbjct: 675 YHQCVKFPTHNGIFTLRAPKEAKTPSRSYEESELCRTEMVNIDESDPTRCVGVGAEISPS 734
Score = 44.3 bits (103), Expect = 8e-04
Identities = 34/172 (19%), Positives = 72/172 (41%), Gaps = 4/172 (2%)
Query: 179 EFDKYNGLTCPQNHIVKY---VRKMGNYKDN-DSLMIHYFQDSLMEDAAEWYTSLSKDDV 234
+ + YNG P+ + + + + DN D+ F + L A W++ L + +
Sbjct: 173 KLESYNGRNDPKEFLTSFNVAINRAELTIDNFDAGRCQIFIEHLTGPAHNWFSRLKPNSI 232
Query: 235 HTFDELAAAFKSHYGFNTRLKPNREFLRSLSQKKEESFREYAQRWRGAAARITPALDEEE 294
+F +L ++F HY + + L S+SQ +ES R + R++ IT +
Sbjct: 233 DSFHQLTSSFLKHYAPLIENQTSNADLWSISQGAKESLRSFVDRFKLVVTNITVPDEAAI 292
Query: 295 MTQTFLKTLKKDYVERMIIAAPNNFSEMVTMGTRLEEAVRDGIIVFEKAESS 346
+ + + + + AP+ + + +R E + +I+ K S+
Sbjct: 293 VALRNAVWYDSRFRDDITLHAPSTLEDALHRASRFIELEEEKLILARKHNST 344
>At3g31530 hypothetical protein
Length = 831
Score = 458 bits (1179), Expect = e-128
Identities = 285/868 (32%), Positives = 446/868 (50%), Gaps = 126/868 (14%)
Query: 1286 SFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIH 1345
S+ ++ + + M+PED+EKT+F T G FCY+VMPFGL NAGATY+R + +F I
Sbjct: 83 SYCHSWTLFVVMMMNPEDQEKTAFYTEQGIFCYRVMPFGLKNAGATYERFVNKIFALQIG 142
Query: 1346 KEVEVYVDDMIVKSADEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQK 1405
K +EVY+DDM+VKS E+ H+ +L + F++L Y ++LNP KC FGVRS
Sbjct: 143 KTMEVYIDDMLVKSMTEKDHISHLRECFKQLNLYNVKLNPAKCRFGVRS----------- 191
Query: 1406 GIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPIVW 1465
GIE +P ++ A+ M +PQ +++V+ GR+ ++RFIS T C + +LR+N+ W
Sbjct: 192 GIEANPKQIEALLGMASPQNKREVQCLTGRVAALNRFISRSTEKCLAFYDVLRRNKKFEW 251
Query: 1466 NDECQEAFDSIKNYLLEPPILVPPVEGRPLIMYLAVFDESMGCVLGQQDETGKKEHAIYY 1525
C+EAF +K YL PPIL PV G P +Y+AV D ++ L ++D +K I+Y
Sbjct: 252 TTRCEEAFQELKKYLATPPILAKPVIGEPQYLYVAVSDTAVSGELVREDRGEQK--LIFY 309
Query: 1526 LSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGKI 1585
+S+ FT E+RY +EK A+ +A++LR Y +H+ ++ M P++ I + +G++
Sbjct: 310 VSQTFTSAESRYPQMEKLALAVVMSAQKLRPYFQSHSIIVMGSM-PLRVILHSPSQSGRL 368
Query: 1586 ARWQMLLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQLIEFDFPDEEIMYLKSKDCEEP 1645
A+W + LSEYDI ++ + K +LAD + P + + E P
Sbjct: 369 AKWTIELSEYDIEYQNKTCAKSQVLADFIVELPTKEAR-------------------ENP 409
Query: 1646 LINEGPDPNSKWGLVFDGAVNAYGKGMGAVIVSPQGHHIPFTARILFECTNNMAEYEACI 1705
L ++ W L DG+ + G G+G + SP G E TNN+AEYEA +
Sbjct: 410 L-------DTTWLLHVDGSSSKQGSGVGIRLTSPTG-----------EATNNVAEYEALV 451
Query: 1706 FGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHAKLIPYHDYARRLLTYFTKVELHHI 1765
G+ A ++I + DS L+ NQ GE+ T K+ Y + + L F + EL I
Sbjct: 452 AGLNLAWGLKIGKTRAFCDSQLIANQFNGEYTTQDKKMEAYLIHVQNLAKNFDEFELTRI 511
Query: 1766 PRDENQMADALATLSSMFRVNHWNDVPIIKGQRLERPS-------HVFAIGDVIDQAGEN 1818
PR EN ADALA L+S + +P+ + +E+PS HV I DQ +
Sbjct: 512 PRGENTSADALAALASTSDTSLKRVIPV---EFIEKPSIELGKEEHVLPIQISADQDDPD 568
Query: 1819 VVGYRPWYYDIKQFLLSREYPPGASKQDKKTLRRLAGRFLLDGDILYKRNYDMVLLRCVD 1878
W I ++ + P + K + L+ A RF+L LYK L+ CV+
Sbjct: 569 DCN-SEWMEPIISYISEGKLP--SDKWKARKLKAQAARFVLVDTKLYKWRLSGPLMTCVE 625
Query: 1879 EHEAEQLVHDVHDGTFGTHATGHTMSRKLLRAGYYWMAMEHDCYQYARKCHKCQIYADKI 1938
+++ ++H G+ +A I
Sbjct: 626 AEAICKIMKEIHSGS----------------------------------------HAPTI 645
Query: 1939 HVPPHALNVMSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQ 1998
H P L+ ++SP+PF W +D+IG + P S + +LV DYF+KW+EA SY ++
Sbjct: 646 HQPAELLSSIASPYPFMRWSMDIIGPMHP--SKQKKLVLVLTDYFSKWIEAESYASIKDA 703
Query: 1999 VVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEA 2058
V F+ +I+CR+G+P +I+TDNG+ + Q C+++ I S+P PQ NG EA
Sbjct: 704 QVENFVLKHILCRHGIPYEIVTDNGSQFISTRFQGFCDKWGIRLSKSTPRYPQGNGQAEA 763
Query: 2059 ANKNIKRIVQKMVTTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIP 2118
AN+ L L +RTT R +T TPF+ +YG E V+P E+ +P
Sbjct: 764 ANE-------------------LEGVLWLHRTTPRRATRETPFASIYGTECVIPAEMIVP 804
Query: 2119 SLRVIMEAKLSEAEWCQSRYDQLNLIEE 2146
SLR + + ++ + Q+ D+L+LI+E
Sbjct: 805 SLRRSLSPE-NDPDNTQTPLDELDLIDE 831
Score = 41.2 bits (95), Expect = 0.007
Identities = 20/53 (37%), Positives = 28/53 (52%)
Query: 881 LGEIDLPITIGPENFLVTFQVMDINASYSCLLGRPWIHDAGAVTSTLHQKLKF 933
LG I LP+ +V F + D Y+ ++G PW++ AV ST H LKF
Sbjct: 3 LGTIKLPVRAKGVTKIVDFSITDQPTVYNAIIGTPWLNQFRAVASTYHLCLKF 55
>At2g15410 putative retroelement pol polyprotein
Length = 1787
Score = 402 bits (1032), Expect = e-111
Identities = 201/497 (40%), Positives = 310/497 (61%), Gaps = 24/497 (4%)
Query: 1110 IPYEITRLLEQEKKAIQPHQEEIELINIGTEENKREIKIGATLEEGVKQKIIQLLREYPD 1169
I Y + + Q+++ P + + +NI + R + I L ++ +++ LR+
Sbjct: 695 IIYNVILVPTQDERP-NPQKGTVVQVNIDESDPSRCVGIRIDLPSELQNELVNFLRQNAA 753
Query: 1170 IFAWSYEDMPGLDPMIVEHRIPTKPECPPVRQKLRRTHPDMALKIKSEVQKQIDAGFLMT 1229
FAWS EDMPG+D + H + P P++QK R+ PD + EV+K +DAG ++
Sbjct: 754 TFAWSVEDMPGIDSAVTCHELNVDPTYKPLKQKRRKLGPDRTKDVNEEVKKLLDAGSIVE 813
Query: 1230 VEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMD 1289
V YP+W+ N V V KK+GK R+C+DF DLNKA PKD+FPLPHID LV+ TA +++ SFMD
Sbjct: 814 VRYPDWLRNPVVVKKKNGKWRVCIDFTDLNKACPKDSFPLPHIDRLVEATAGNELLSFMD 873
Query: 1290 GFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVE 1349
FSGYNQI M DREKT FIT GT+CYKVMPFGL NAGATY R + +F D + +E
Sbjct: 874 AFSGYNQILMHQNDREKTVFITDQGTYCYKVMPFGLKNAGATYPRLVNQMFTDQLDHSME 933
Query: 1350 VYVDDMIVKSADEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEV 1409
VY+DDM+VKS E+H+ +L + F+ L +Y ++LNP+KCTFGV SG+ LG++V+++GIE
Sbjct: 934 VYIDDMLVKSLRAEEHITHLRQCFQVLNRYNMKLNPSKCTFGVTSGEFLGYLVTRRGIEA 993
Query: 1410 DPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPIVWNDEC 1469
+P ++ AI ++P+P+ ++V+ +GR+ ++RFIS T C P ++LLR N+ W+++C
Sbjct: 994 NPKQISAIIDLPSPRNTREVQRLIGRIAALNRFISRSTDKCLPFYQLLRANKRFEWDEKC 1053
Query: 1470 QEAFDSIKNYLLEPPILVPPVEGRPLIMYLAVFDESMGCVLGQQDETGKKEHAIYYLSKK 1529
+ EG L +Y+AV ++ VL ++D ++H I+Y+SK
Sbjct: 1054 E--------------------EGETLYLYIAVSTSAVSGVLVREDR--GEQHPIFYVSKT 1091
Query: 1530 FTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGKIARWQ 1589
E RY LEK A+ +A++LR Y ++T +++ P++ I + +G++A+W
Sbjct: 1092 LDGAELRYPTLEKLAFAVVISARKLRPYFKSYTVEVLTN-QPLRTILHSPSQSGRLAKWA 1150
Query: 1590 MLLSEYDIVFKTQKAIK 1606
+ LSEYDI +K + K
Sbjct: 1151 VELSEYDIAYKNRTCAK 1167
Score = 310 bits (793), Expect = 8e-84
Identities = 203/608 (33%), Positives = 296/608 (48%), Gaps = 72/608 (11%)
Query: 1692 FECTNNMAEYEACIFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHAKLIPYHDYAR 1751
F +NN AEYEA I G+ A + +K + Y DS LV +Q G +E + ++ Y R
Sbjct: 1190 FPASNNEAEYEALIAGLRLAHGIEVKKIQAYCDSQLVASQFSGNYEAKNERMDAYLKVVR 1249
Query: 1752 RLLTYFTKVELHHIPRDENQMADALATLSSMFRVN-------HWNDVPIIKGQ-RLERPS 1803
L F EL IPR +N ADALA L+S + DVP IK Q + +PS
Sbjct: 1250 ELSYNFEVFELTKIPRSDNAPADALAVLASTSDPDLRRVIPVECIDVPSIKIQGTITKPS 1309
Query: 1804 HVFAIGDVIDQ--------------------AGENVVGYRP------------------- 1824
I +Q +G V P
Sbjct: 1310 EYTVIDLTAEQLSIVMVILPPATDRSEDAGPSGNLVCSSDPGQSSGCDRSDDSNRSADSD 1369
Query: 1825 ------WYYDIKQFLLSREYPPGASKQDKKTLRRLAGR---FLLDGDILYKRNYDMVLLR 1875
W +I+ ++ R P +DK RRL R + L + L + + VLL
Sbjct: 1370 SPASTNWIEEIRSYIADRIVP-----KDKWAARRLRARSAQYTLPHEHLLRWSATGVLLS 1424
Query: 1876 CVDEHEAEQLVHDVHDGTFGTHATGHTMSRKLLRAGYYWMAMEHDCYQYARKCHKCQIYA 1935
C+D+ EA+Q++ ++H+G G H+ G ++ K+ + G YW M DC ++ +C KCQ +A
Sbjct: 1425 CLDDEEAQQVMREIHEGAGGNHSGGRALALKIRKHGQYWPTMNADCEKFVARCEKCQGHA 1484
Query: 1936 DKIHVPPHALNVMSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNV 1995
IH+P L P+PF W +D+I AS ++ILV DYFTKW EA SY +
Sbjct: 1485 PFIHIPSEVLQTAMPPYPFMRWAMDIIRPF--PASRQKKYILVMTDYFTKWFEAESYARI 1542
Query: 1996 TKQVVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGA 2055
+ V F+ NIIC +G+P +I+TDNGT + + C ++KI S+P PQ NG
Sbjct: 1543 QSKEVQNFVWKNIICHHGLPYEIVTDNGTQFTSLQFEGFCAKWKIRLSKSTPRYPQCNGQ 1602
Query: 2056 VEAANKNIKRIVQKMVTTYKD-WHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLE 2114
EA NK I ++K + K W + L L YRTT R ST TPFSL YGMEA+ P E
Sbjct: 1603 AEATNKTILDGLKKRLDEKKGAWADELDGVLWSYRTTPRRSTDRTPFSLTYGMEALAPCE 1662
Query: 2115 VEIPSLR---VIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGHSYQARMKAAFDKKVN 2171
+P++R +I + L++ Q D L+ +EE+R A+ R +YQ ++KKV
Sbjct: 1663 AGLPTVRRSMLINDPTLND----QMLLDNLDTLEEQRDQALLRIQNYQQAAAKFYNKKVK 1718
Query: 2172 PREFKVGELVLKRRISQQPD-PRGKWTPNYEGPYVVKKAFSGGALILTHMDGVELPNPVN 2230
R F G+LVL++ + GK ++EGPY++ K G L MDG +P N
Sbjct: 1719 NRLFAEGDLVLRKVFENTVEQDAGKLGAHWEGPYLISKVVKPGVYELLTMDGTPIPRSWN 1778
Query: 2231 ADIVKKYF 2238
+ +K+Y+
Sbjct: 1779 SANLKRYY 1786
Score = 32.3 bits (72), Expect = 3.2
Identities = 22/102 (21%), Positives = 42/102 (40%), Gaps = 4/102 (3%)
Query: 183 YNGLTCPQNHIVKYVRKMGNY----KDNDSLMIHYFQDSLMEDAAEWYTSLSKDDVHTFD 238
Y GL P+ + +G +D D+ F L A W++ L + + +
Sbjct: 258 YEGLVDPRPFLTSVSIAIGRAHFSDEDRDAGSCQLFVKHLSGAALTWFSRLEANSIDSVH 317
Query: 239 ELAAAFKSHYGFNTRLKPNREFLRSLSQKKEESFREYAQRWR 280
L +F +YG + L +++Q +ES R + R++
Sbjct: 318 ALTTSFLKNYGVFMEKGASNVDLWTMAQTAKESLRSFIGRFK 359
>At2g13330 F14O4.9
Length = 889
Score = 381 bits (979), Expect = e-105
Identities = 206/538 (38%), Positives = 304/538 (56%), Gaps = 59/538 (10%)
Query: 1244 KKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPED 1303
+K+GK R+C+DFRDLNKA PKD+FPLPHID LV+ T + + SFMD F GYNQI M +
Sbjct: 289 EKNGKWRVCIDFRDLNKACPKDSFPLPHIDRLVEATVEHEKLSFMDAFYGYNQILMRRDG 348
Query: 1304 REKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSADEE 1363
+EKT+FIT GT+ YKVMPFGL NAG TYQR + +F D + K +EVY+DDM+VKSA E+
Sbjct: 349 QEKTAFITDRGTYYYKVMPFGLKNAGTTYQRLVNRMFVDQLGKTIEVYIDDMLVKSAHEK 408
Query: 1364 QHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAP 1423
HV L + F+ L K++++LNP KC+F V+S + L ++V+++GIE +P ++ A EMP+P
Sbjct: 409 DHVPQLRECFKILIKFEMKLNPEKCSFEVQSREFLEYLVTERGIEANPKQIAAFIEMPSP 468
Query: 1424 QTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPIVWNDECQEAFDSIKNYLLEP 1483
+ ++V+ GR+ ++ FIS C P ++ LRK + WN +C++AF +K YL EP
Sbjct: 469 KMAREVQRLTGRIPALNGFISRSANKCVPFYQPLRKGKEFDWNKDCEQAFKQLKAYLTEP 528
Query: 1484 PILVPPVEGRPLIMYLAVFDESMGCVLGQQDETGKKEHAIYYLSKKFTDCETRYTMLEKT 1543
PIL P +G PL +Y T+ + R +EK
Sbjct: 529 PILAKPEKGEPLYLY--------------------------------TNRDKRCPAMEKL 556
Query: 1544 CCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGKIARWQMLLSEYDIVFKTQK 1603
+ + ++LR Y +H ++ PI+ I +G++A+W + L EYDI ++T+
Sbjct: 557 ALTVVMSVRKLRLYFQSHPI-VVMTSQPIRTILHSLTQSGRLAKWAIELREYDIEYRTRT 615
Query: 1604 AIKGSILADHLAYQPLDDYQLIEFDFPDEEIMYLKSKDCEEPLINEGPDPNSKWGLVFDG 1663
++K +LAD + PL D +G + N KW L DG
Sbjct: 616 SLKAQVLADFVIKLPLADL--------------------------DGTNSNKKWLLHVDG 649
Query: 1664 AVNAYGKGMGAVIVSPQGHHIPFTARILFECTNNMAEYEACIFGIEEAIDMRIKHLDIYG 1723
+ N G G+G + SP G I + ++ F +NN +EYEA I GI+ A + I+ + Y
Sbjct: 650 SSNRQGSGVGIQLTSPTGEVIEQSLQLGFNASNNESEYEALIAGIKLAQEKGIREIHAYS 709
Query: 1724 DSALVINQIKGEWETHHAKLIPYHDYARRLLTYFTKVELHHIPRDENQMADALATLSS 1781
DS LV +Q GE+E ++ Y + + L F +L IPR EN AD LA L+S
Sbjct: 710 DSQLVTSQFHGEYEAKDERMEAYLELVKTLAQQFESFKLTRIPRGENTSADTLAALAS 767
Score = 75.5 bits (184), Expect = 3e-13
Identities = 48/156 (30%), Positives = 78/156 (49%), Gaps = 6/156 (3%)
Query: 803 NNLWFSEEELPEVGKSHNLALHISLNCKSDMISNVLVDTGSSLNVMPKTTLDQLSYRGTP 862
+ + F E E+ ++ K H+ AL I ++ + +S ++VDTGSS++V+ + + +
Sbjct: 45 DGITFWESEITDLDKPHDDALVIRIDVGNYELSCIMVDTGSSVDVLFYDAFKRTGHLDSK 104
Query: 863 LRRSTFLVKAFDGSRKNVLGEIDLPITIGPENFLVTFQVMDINASYSCLLGRPWIHDAGA 922
L+ + F G +G I LP L F V+D A ++ +LGRPW+H A
Sbjct: 105 LQGRKTPLTGFAGDTTFSIGTIQLPTIARGVRQLTNFLVVDKKAPFNAILGRPWLHVMKA 164
Query: 923 VTSTLHQKLKFVKNGKLVTIHGEEAYLVSQLSSFSC 958
V ST HQ +KF + ++G SQ SS C
Sbjct: 165 VPSTYHQCIKFPSYKGIAVVYG------SQRSSRKC 194
Score = 33.1 bits (74), Expect = 1.9
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 1132 IELINIGTEENKREIKIGATLEEGVKQKIIQLLREYPDIFAWSYEDMPGL 1181
I + I + KR + IG L+ V++ +I L+E D FAWS ++ G+
Sbjct: 237 ITQVCIDESDPKRCVGIGHDLDLTVREDLITFLKENKDSFAWSSANLQGI 286
>At2g14400 putative retroelement pol polyprotein
Length = 1466
Score = 324 bits (831), Expect = 3e-88
Identities = 158/355 (44%), Positives = 240/355 (67%), Gaps = 2/355 (0%)
Query: 1204 RRTHPDMALKIKSEVQKQIDAGFLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASP 1263
R+ + A + EV K + G + V+YP+W+AN V V KK+GK R+C+DF DLNKA P
Sbjct: 470 RKLGVERAKAVNDEVDKLLKIGSIREVQYPDWLANTVVVKKKNGKDRVCIDFTDLNKACP 529
Query: 1264 KDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPF 1323
KD+FPLPHID LV++TA +++ SFMD FSGYNQI M+PED+EKT FIT G +CYKVMPF
Sbjct: 530 KDSFPLPHIDRLVESTAGNELLSFMDAFSGYNQIMMNPEDQEKTLFITDRGIYCYKVMPF 589
Query: 1324 GLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSADEEQHVEYLTKMFERLRKYKLRL 1383
GL NAGATY R + +F + + K +EVY+DDM++KS +E HV++L + F L +Y+++L
Sbjct: 590 GLRNAGATYPRLVNKMFSEHVGKTMEVYIDDMLIKSLKKEDHVKHLEECFAILNQYQMKL 649
Query: 1384 NPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFI 1443
NP KCTFGV SG+ LG+IV+++GIE +P+++ A MP+P+ K+V+ GR+ ++RFI
Sbjct: 650 NPAKCTFGVPSGEFLGYIVTKRGIEANPNQINAFLNMPSPKNFKEVQRLTGRIAALNRFI 709
Query: 1444 SHMTATCGPIFKLLRKNQPIVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLIMYLAVFD 1503
S T P +++L+ N+ +W+++C+EAF +K YL PP+L P L +Y++V +
Sbjct: 710 SRSTDKSLPFYQILKGNKEFLWDEKCEEAFGQLKAYLTSPPVLFKPELDEKLYLYVSVSN 769
Query: 1504 ESMGCVLGQQDETGKKEHAIYYLSKKFT-DCETRYTMLEKTCCALAWAAKRLRHY 1557
++ VL ++D G+++ Y + +F D E + + +E + AK R +
Sbjct: 770 HAVSGVLIREDR-GEQKPIYYIIVNQFNGDYEAKDSRMEAYLHVVKDLAKNFRKF 823
Score = 216 bits (549), Expect = 2e-55
Identities = 160/538 (29%), Positives = 252/538 (46%), Gaps = 80/538 (14%)
Query: 1727 LVINQIKGEWETHHAKLIPYHDYARRLLTYFTKVELHHIPRDENQMADALATLSSMF--R 1784
+++NQ G++E +++ Y + L F K EL IPR +N ADALA L+S
Sbjct: 790 IIVNQFNGDYEAKDSRMEAYLHVVKDLAKNFRKFELIRIPRGQNTTADALAALASTSDPE 849
Query: 1785 VNHWNDVPIIKGQRLERPSHVFAIGDVIDQA---GENVVGYRPWYYDIKQFLLSREYPPG 1841
VN V I + ++ F + A G+ V P +K+ P
Sbjct: 850 VNSIIPVECISERSIKEEKEAFVVTRSRAAARDRGDTAVELPP----VKRRKSKEATVPK 905
Query: 1842 ASKQDKKTLRRLAGRFL-----------LDGDIL--------------YKRNYDMVLLRC 1876
+ Q+ + + +D DIL Y+R L
Sbjct: 906 PAVQENIGIELIEEVISDAKIEAETEPWVDEDILAPNEHPEPEALNSLYRRGVSDPYLLS 965
Query: 1877 VDEHEAEQLVHDVHDGTFGTHATGHTMSRKLLRAGYYWMAMEHDCYQYARKCHKCQIYAD 1936
+ E ++ +VH+G G+H++G M+ K+ + YYW M DC +YA++C +CQ++A
Sbjct: 966 IFGPVVEIVMSEVHEGLCGSHSSGRAMAFKIKKMCYYWPTMITDCVKYAQRCKRCQLHAP 1025
Query: 1937 KIHVPPHALNVMSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVT 1996
IH P + +S+P+PF W +D+IG + +++ G +++LV DYF+KW+EA +
Sbjct: 1026 LIHQPSELFSSISAPYPFMRWSMDIIGPLH-RSTRGVQYLLVLTDYFSKWIEAEA----- 1079
Query: 1997 KQVVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAV 2056
I+ +G+ K+ + S+ PQ NG
Sbjct: 1080 -----------ILLNWGI------------------------KVSY--STLRYPQGNGQA 1102
Query: 2057 EAANKNIKRIVQKMVTTYKD-WHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEV 2115
EAANK I ++K + K W++ L L YRTT R STG TPFSLVYGM+AV+P E+
Sbjct: 1103 EAANKTILSNLKKRLNHLKGGWYDELQPVLWAYRTTPRRSTGETPFSLVYGMKAVVPAEL 1162
Query: 2116 EIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGHSYQARMKAAFDKKVNPREF 2175
+P LR EA L+E E D L+ I E+R A+ + +YQ ++ KV R F
Sbjct: 1163 NVPGLR-RTEAPLNEKENSAMLDDSLDTINERRDQALIQIQNYQHAAARYYNSKVKSRPF 1221
Query: 2176 KVGELVLKRRI-SQQPDPRGKWTPNYEGPYVVKKAFSGGALILTHMDGVELPNPVNAD 2232
VG+ VLKR +++ + GK N+EGPY+V + G L ++ + P N +
Sbjct: 1222 FVGDYVLKRVFDNKKEEGAGKLGINWEGPYIVTEVVRNGVYRLKDLEDRPVQRPWNVN 1279
Score = 45.1 bits (105), Expect = 5e-04
Identities = 26/111 (23%), Positives = 49/111 (43%), Gaps = 4/111 (3%)
Query: 181 DKYNGLTCPQNHIVKYVRKMG----NYKDNDSLMIHYFQDSLMEDAAEWYTSLSKDDVHT 236
+ YNGL P+ ++ ++ G N D D F ++L A W+T L +
Sbjct: 163 ESYNGLEDPKGYLAAFLIAAGRVDLNEADEDVRYCKLFSENLCGQALMWFTQLEPGSISN 222
Query: 237 FDELAAAFKSHYGFNTRLKPNREFLRSLSQKKEESFREYAQRWRGAAARIT 287
F+EL+ F Y + L +LSQ E+ R + +++ ++++
Sbjct: 223 FNELSVVFLKQYSILMDKSISDTDLWNLSQGPNETLRAFITKFKYVLSKLS 273
Score = 41.2 bits (95), Expect = 0.007
Identities = 25/88 (28%), Positives = 50/88 (56%), Gaps = 4/88 (4%)
Query: 804 NLWFSEEELPEVGKSHNLALHISLNCKSDMISNVLVDTGSSLNVMPKTTLDQLSYRGTPL 863
++ F E+E + +SH+ AL ++L+ + +S +L+DTGSS++++ +TL+++ +
Sbjct: 408 SILFDEKETQHLERSHDDALVVTLDVANFEVSRILIDTGSSVDLIFLSTLERMGISRADV 467
Query: 864 RRSTFLVKAFDGSRKNVLGEIDLPITIG 891
R V+ K V E+D + IG
Sbjct: 468 NRRKLGVE----RAKAVNDEVDKLLKIG 491
>At2g14380 putative retroelement pol polyprotein
Length = 764
Score = 293 bits (749), Expect = 1e-78
Identities = 139/282 (49%), Positives = 196/282 (69%)
Query: 1177 DMPGLDPMIVEHRIPTKPECPPVRQKLRRTHPDMALKIKSEVQKQIDAGFLMTVEYPEWV 1236
DM G+DP + H + P V+QK R+ P+ + + EV K +DAG ++ V+YPEW+
Sbjct: 476 DMVGIDPEVACHELNVDPTFKLVKQKRRKLGPERSKAVNDEVDKLLDAGSIVEVKYPEWL 535
Query: 1237 ANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQ 1296
AN V V KK+ K R+C+DF DLNKA PKD+FPLPHID +V+ T +++ SFMD FSGYNQ
Sbjct: 536 ANPVVVKKKNDKWRVCIDFTDLNKACPKDSFPLPHIDRMVEATTGNELLSFMDAFSGYNQ 595
Query: 1297 IKMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMI 1356
I M +D+EKTSFI GT+CYKVMPFGL N GA YQR + +F + K +EVY+DDM+
Sbjct: 596 IPMHKDDQEKTSFIIDRGTYCYKVMPFGLKNVGARYQRLVNQMFAPQLGKTMEVYIDDML 655
Query: 1357 VKSADEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRA 1416
VKS H+++L FE L KY ++LNP KC FGV SG+ LG+IV+++GIE +P ++RA
Sbjct: 656 VKSTRSADHIDHLKACFETLNKYNMKLNPAKCLFGVTSGEFLGYIVTKRGIEANPKQIRA 715
Query: 1417 IREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLR 1458
I ++ +P+ +K+V+ GR+ ++RFI+ T P ++LLR
Sbjct: 716 ILDLQSPRNKKEVQRLTGRIAGLNRFIARSTDKSLPFYQLLR 757
Score = 84.3 bits (207), Expect = 7e-16
Identities = 59/195 (30%), Positives = 89/195 (45%), Gaps = 27/195 (13%)
Query: 779 EQAYVDHEVTVDRFGGIVGNITACNN---------------LW------------FSEEE 811
+Q + D V R I+G +TAC + LW F+ E+
Sbjct: 277 DQQHNDAPVPRRRVNMIMGGLTACRDSFRSIKEYIKSGAATLWSSPATKEMTPLTFTSED 336
Query: 812 LPEVGKSHNLALHISLNCKSDMISNVLVDTGSSLNVMPKTTLDQLSYRGTPLRRSTFLVK 871
L V HN L I L+ ++ +L+DTGSS+NV+ K L ++ ++ S +
Sbjct: 337 LFGVDLPHNDPLVIELHIGESEVTRILIDTGSSVNVVFKDVLQKMKVHDRHIKPSVRPLT 396
Query: 872 AFDGSRKNVLGEIDLPITIGPENFLVTFQVMDINASYSCLLGRPWIHDAGAVTSTLHQKL 931
FDG+ G I LPI +G F V+D Y+ +LG PWIHD A+ S+ HQ +
Sbjct: 397 GFDGNTMMTNGTIKLPIYLGGAATWHKFVVVDKPTIYNIILGTPWIHDMQAIPSSYHQCI 456
Query: 932 KFVKNGKLVTIHGEE 946
K + + TI G +
Sbjct: 457 KIPTSIGIETIRGNQ 471
>At1g37200 hypothetical protein
Length = 1564
Score = 287 bits (734), Expect = 6e-77
Identities = 136/298 (45%), Positives = 200/298 (66%), Gaps = 4/298 (1%)
Query: 1127 PHQEEIELINIGTEENKREIKIGATLEEGVKQKIIQLLREYPDIFAWSYEDMPGLDPMIV 1186
P + I + I + K+ + +G L+ +++ I L+E D FAWS ++ G+ +
Sbjct: 614 PQKSSITQVYIDESDPKQCVGVGQDLDPAIREDFITFLKENKDSFAWSSANLQGISLEVT 673
Query: 1187 EHRIPTKPECPPVRQKLRRTHPDMALKIKSEVQKQIDAGFLMTVEYPEWVANIVPVPKKD 1246
H + P P++QK R+ P+ A ++ EV + + G + V+YP+W+AN V V K+
Sbjct: 674 SHELNVDPTYRPIKQKRRKLGPERAKAVQDEVDRLLKIGSIREVKYPDWLANPVVVKNKN 733
Query: 1247 GKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREK 1306
GK R+C+DF DLNKA PKD+FPLPHID LV TA ++ SFMD FSGYNQI M P+D+EK
Sbjct: 734 GKWRVCIDFMDLNKACPKDSFPLPHIDRLVKATAGHELLSFMDAFSGYNQILMRPDDQEK 793
Query: 1307 TSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSADEEQHV 1366
T+FIT CYKVMPFGL N GATYQR + +F D + K +E+Y+DDM+VKSA E+ H+
Sbjct: 794 TAFITD----CYKVMPFGLKNTGATYQRLVNRMFADQLGKTMELYIDDMLVKSAHEKDHL 849
Query: 1367 EYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQ 1424
L + F+ L K++++LNP KC+FGV SG+ LG++V+Q+GIE +P ++ A +MP+P+
Sbjct: 850 PQLRECFKILNKFEMKLNPEKCSFGVPSGEFLGYLVTQRGIEANPKQIAAFIDMPSPK 907
Score = 242 bits (618), Expect = 2e-63
Identities = 165/555 (29%), Positives = 259/555 (45%), Gaps = 91/555 (16%)
Query: 1514 DETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIK 1573
D G+K IYY+SK D ET Y +EK A+ +A++LR YL +H ++ PI+
Sbjct: 927 DHEGQKP--IYYVSKTLIDAETHYRAMEKLALAVVMSARKLRQYLQSHPI-VVMTSQPIR 983
Query: 1574 YIFEKAAVTGKIARWQMLLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQLIEFDFPDEE 1633
I + ++A+W + LSEYDI ++T+ + K +LAD + PL D
Sbjct: 984 TILHSTTQSSRLAKWAIELSEYDIEYRTRTSFKAQVLADFVIELPLADL----------- 1032
Query: 1634 IMYLKSKDCEEPLINEGPDPNSKWGLVFDGAVNAYGKGMGAVIVSPQGHHIPFTARILFE 1693
+G + N KW L DG+ N G G G + SP G I + R+ F
Sbjct: 1033 ---------------DGTNSNKKWLLHVDGSSNRQGSGEGIQLTSPTGEVIEQSFRLGFN 1077
Query: 1694 CTNNMAEYEACIFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHAKLIPYHDYARRL 1753
+NN +EYEA I GI+ A MRI+ + + DS LV +Q GE+E ++ Y + + L
Sbjct: 1078 ASNNESEYEALIDGIKLAQGMRIRDIHAHSDSQLVTSQFHGEYEAKDERMEAYLELVKTL 1137
Query: 1754 LTYFTKVELHHIPRDENQMADALATLSSMFRVNHWNDVPIIKGQRLERPSHVFAI----- 1808
F EL IPR EN DALA L+S +P+ + +E PS +
Sbjct: 1138 TQQFESFELTRIPRGENTSTDALAALASTLDPFVKRIIPV---EGIEHPSIDLTVKHAGM 1194
Query: 1809 ----------------------------GDVIDQA----GENVVGYRP-----WYYDIKQ 1831
G ++A E + Y P W I
Sbjct: 1195 ETSATCNFTRVTRSTTAAARALAAAAEAGAAEEEAKLRTPEQLASYEPEPYNDWRIPIID 1254
Query: 1832 FLLSREYPPGASKQDKKTLRRLAGRFLLDGDILYKRNYDMVLLRCVDEHEAEQLVHDVHD 1891
++ PP K + + L+ + R+ + L KR+ + C + + L+ +H+
Sbjct: 1255 YIERGITPP--DKWETRKLKAQSARYCIMEGRLMKRSVAGPYMVCTYGQQTKDLMKSMHE 1312
Query: 1892 GTFGTHATGHTMSRKLLRAGYYWMAMEHDCYQYARKCHKCQIYADKIHVPPHALNVMSSP 1951
G G+H +G T+ +L DC ++ +C KCQ +A +H PP ++ +SSP
Sbjct: 1313 GQCGSHYSGRTLRCIMLA----------DCIAHSLRCDKCQRHAPTLHQPPEEMSSISSP 1362
Query: 1952 WPFSMWGIDMIGRIEPKASNGH---RFILVAIDYFTKWVEAASYTNVTKQVVAKFIKNNI 2008
+PF W +D++ +E AS G + +LV DY TKW+E ++ VT++ V F+ NI
Sbjct: 1363 YPFMKWSMDVVRPME--ASGGKKRLKNLLVLTDYSTKWIEGKAFQQVTEKQVEVFLLENI 1420
Query: 2009 ICRYGVPSKIITDNG 2023
+ R+G+P +I+TDNG
Sbjct: 1421 VYRHGIPYEIVTDNG 1435
Score = 49.3 bits (116), Expect = 3e-05
Identities = 33/98 (33%), Positives = 51/98 (51%), Gaps = 2/98 (2%)
Query: 2142 NLIEEKRMDAMARGHSYQARMKAAFDKKVNPREFKVGELVLKRRISQQPD-PRGKWTPNY 2200
+ I+E+R AM + +YQ ++ + R F+VGELVL++ S + GK N+
Sbjct: 1465 DFIDERRDHAMIQVQNYQQPAVRYYNSNIKIRRFEVGELVLRKVFSNTRELNAGKLGTNW 1524
Query: 2201 EGPYVVKKAFSGGALILTHM-DGVELPNPVNADIVKKY 2237
EGPY + + G L + +GV P NA +KKY
Sbjct: 1525 EGPYRITEVVRDGIYKLVKVFNGVPELRPWNAMHLKKY 1562
Score = 41.6 bits (96), Expect = 0.005
Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
Query: 906 ASYSCLLGRPWIHDAGAVTSTLHQKLKFVKNGKLVTIHGEEAYLVSQLSSFSC 958
A ++ +LGRPW+H AV ST HQ +KF + I+G SQ SS C
Sbjct: 530 APFNAILGRPWLHAMKAVPSTYHQCIKFPSEKGIAVIYG------SQRSSRRC 576
Score = 31.2 bits (69), Expect = 7.2
Identities = 15/45 (33%), Positives = 28/45 (61%), Gaps = 2/45 (4%)
Query: 805 LWFSEEELPEVGKSHNLALHISLNCKSDMISNVLVDTGSSLNVMP 849
LW E E ++ K H+ A+ I ++ + +S +++DTGSS++ P
Sbjct: 489 LW--ESETTDLDKPHDDAIVIRIDVGNYKLSRIMIDTGSSVDKAP 531
>At4g03800
Length = 637
Score = 274 bits (701), Expect = 4e-73
Identities = 138/337 (40%), Positives = 214/337 (62%), Gaps = 21/337 (6%)
Query: 1178 MPGLDPMIVEHRIPTKPECPPVRQKLRRTHPDMALKIKSEVQKQIDAGFLMTVEYPEWVA 1237
MP +DP I+ H + P P++QK R+ + A + ++ K + G + V+YP+WVA
Sbjct: 321 MPDIDPSIICHELNVDPRFKPLKQKRRKLGVERAKAVNGKIDKLLKIGSIREVQYPDWVA 380
Query: 1238 NIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQI 1297
V V KK+GK R+C+DF DLNKA PKD+FPLPHID LV++TA +++ +FMD F GYNQI
Sbjct: 381 ITVVVKKKNGKDRVCIDFTDLNKACPKDSFPLPHIDRLVESTAGNELLTFMDAFLGYNQI 440
Query: 1298 KMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIV 1357
M+PED+EKTSFIT + GATYQ + +F++ + K +EV +DD +V
Sbjct: 441 MMNPEDQEKTSFIT---------------DRGATYQWLVNKMFNEHLRKTMEVSIDDTLV 485
Query: 1358 KSADEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAI 1417
KS +E HV++L + FE L +Y+++LN KCTFGV SG+ LG+IV+++GIE +P+++ A
Sbjct: 486 KSLKKEDHVKHLGECFEILNQYQMKLNLAKCTFGVPSGEFLGYIVTKRGIEANPNQINAF 545
Query: 1418 REMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPIVWNDECQEAFDSIK 1477
+ P+ + K+V+ GR+ S T P +++L+ N +W+++C+EAF +K
Sbjct: 546 LKTPSLRNFKEVQRLTGRI------ASRSTDKSLPFYQILKGNNGFLWDEKCEEAFRQLK 599
Query: 1478 NYLLEPPILVPPVEGRPLIMYLAVFDESMGCVLGQQD 1514
YL PP+L P L +Y+ V + ++ VL ++D
Sbjct: 600 AYLTTPPVLSKPEADEKLYLYVFVSNHAVSGVLVRED 636
Score = 80.5 bits (197), Expect = 1e-14
Identities = 52/144 (36%), Positives = 77/144 (53%), Gaps = 14/144 (9%)
Query: 802 CNNLWFSEEELPEVGKSHNLALHISLNCKSDMISNVLVDTGSSLNVMPKTTLDQLSYRGT 861
C+++ F EEE + + H+ AL I+L+ + IS +LVDTGSS++++ + G
Sbjct: 182 CSSVSFDEEETRHIERPHDDALIITLDVANFKISRILVDTGSSVDLI---------FLGP 232
Query: 862 PLRRSTFLVKAFDGSRKNVLGEIDLPITIGPENFLVTFQVMDINASYSCLLGRPWIHDAG 921
P + AF LG I LP+ G + +V F V D A+Y+ +LG PWI
Sbjct: 233 PSP-----LVAFTSESAMSLGTIKLPVLAGKMSKIVDFVVFDKPATYNIILGTPWIFQMK 287
Query: 922 AVTSTLHQKLKFVKNGKLVTIHGE 945
AV ST HQ LKF + + TI G+
Sbjct: 288 AVPSTYHQWLKFPTSNGVETIWGD 311
>At1g37060 Athila retroelment ORF 1, putative
Length = 1734
Score = 271 bits (692), Expect = 4e-72
Identities = 169/585 (28%), Positives = 283/585 (47%), Gaps = 51/585 (8%)
Query: 1073 MHVSELNHNKPVEH-SNPTVPPSFDFPVYEAEDEEGDNIPYEITRLLEQEKKAIQPHQEE 1131
+H+ L ++H + PT + + N+ + ++ K ++P +
Sbjct: 774 LHLETLGGEYILDHITRPTAHSVYSTTSLDHNSSSEANLVSDDWSEIKAPKVDLKPLPKG 833
Query: 1132 IELINIGTEENKREIKIGATLEEGVKQKIIQLLREYPDIFAWSYEDMPGLDPMIVEHRIP 1191
+ + +G I + V I +L++ Y +S +D+ G+ P + HRI
Sbjct: 834 LRYVFLGLNSTYPVIVNDELTADQVNLLITELMK-YRKAIGYSLDDIKGISPTLCTHRIH 892
Query: 1192 TKPECPPVRQKLRRTHPDMALKIKSEVQKQIDAGFLMTVEYPEWVANIVPVPKKDGKV-- 1249
+ E + RR +P++ +K E+ K +DAG + + WV+ + VPKK G
Sbjct: 893 LENESYSSIEPQRRLNPNLKEVVKKEILKLLDAGVIYPISDSTWVSPVHCVPKKGGMTVV 952
Query: 1250 ----------------RMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSG 1293
RMC+++R LN AS K++FPLP ID +++ A + F+D +SG
Sbjct: 953 KNSKDELIPTRTITGHRMCIEYRKLNVASRKEHFPLPFIDHMLERLANHPYYCFLDSYSG 1012
Query: 1294 YNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYVD 1353
+ QI + P D+ KT+F P+GTF YK MPFGL NA AT+QR MT++F D+I + VEV++D
Sbjct: 1013 FFQIPIHPNDQGKTTFTCPYGTFAYKRMPFGLCNAPATFQRCMTSIFSDLIEEMVEVFMD 1072
Query: 1354 DMIVKSADEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDK 1413
D V + + L ++ +R + L LN KC F VR G +LG +S++GIEVD K
Sbjct: 1073 DFSVYGSSFSSCLLNLCRVLKRCEETNLVLNWEKCHFMVREGIVLGRKISEEGIEVDKAK 1132
Query: 1414 VRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPIVWNDECQEAF 1473
+ + ++ P+T K +R FLG + FI + P+ +LL K ++DEC AF
Sbjct: 1133 IDVMMQLQPPKTVKDIRSFLGHAGFYRIFIKDFSKLARPLTRLLCKETEFAFDDECLTAF 1192
Query: 1474 DSIKNYLLEPPILVPPVEGRPLIMYLAVFDESMGCVLGQQDETGKKEHAIYYLSKKFTDC 1533
IK L+ PI+ P P + D
Sbjct: 1193 KLIKEALITAPIVQAPNWDFPFEII------------------------------TMDDA 1222
Query: 1534 ETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGKIARWQMLLS 1593
+ RY EK A+ +A ++ R YLV + + +++I+ K ++ RW +LL
Sbjct: 1223 QVRYATTEKELLAVVFAFEKFRSYLVGSKVTIYTDHAALRHIYAKKDTKPRLLRWILLLQ 1282
Query: 1594 EYDIVFKTQKAIKGSILADHLAYQPLDDYQLIEFDFPDEEIMYLK 1638
E+D+ +K I+ + ADHL+ ++D LI+ P+E++M ++
Sbjct: 1283 EFDMEIVDKKGIENGV-ADHLSRMRIEDEVLIDDSMPEEQLMAIQ 1326
Score = 201 bits (512), Expect = 3e-51
Identities = 143/419 (34%), Positives = 207/419 (49%), Gaps = 43/419 (10%)
Query: 1824 PWYYDIKQFLLSREYPPGASKQDKKTLRRLAGRFLLDGDILYKRNYDMVLLRCVDEHEAE 1883
PWY D +L+S E PP S +KK + F D LY D + CV E E E
Sbjct: 1334 PWYADHVNYLVSGEEPPNLSSYEKKKFFKDINHFYWDEPYLYTLCKDKIYRTCVSEDEIE 1393
Query: 1884 QLVHDVHDGTFGTH-ATGHTMSRKLLRAGYYWMAMEHDCYQYARKCHKCQIYADKIHVPP 1942
++ H +G H AT TMS K+L+AG++W +M D ++ KC +
Sbjct: 1394 GILLHCHGFAYGGHFATFKTMS-KILQAGFWWPSMFKDAQEFISKCDSFE---------- 1442
Query: 1943 HALNVMSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEA-ASYTNVTKQVVA 2001
F +WGID +G +S G+++ILVAIDY +KWVEA AS+TN +VV
Sbjct: 1443 ----------NFDVWGIDFMGPF--PSSYGNKYILVAIDYVSKWVEAIASHTN-DARVVL 1489
Query: 2002 KFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAANK 2061
K K I R+GVP +I+D G + N + L ++ ++H S G VE +N+
Sbjct: 1490 KLFKTIIFPRFGVPRIVISDGGKHFINKGFENLLKKHGVKHKTS--------GQVEISNR 1541
Query: 2062 NIKRIVQKMV-TTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSL 2120
IK I++K V +T KDW L L YRT ++ G TPF+L+YG LP+E+E ++
Sbjct: 1542 EIKAILEKTVGSTRKDWSAKLNDTLWAYRTAFKTPIGTTPFNLLYGKSCHLPVELEYKAM 1601
Query: 2121 RVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGHSYQARMKAAFDKKVNPREFKVGEL 2180
+ + R QLN + + R++A Y+ R K+ DKK+ R+FKVG+
Sbjct: 1602 WAVKLLNFDIKTAEEKRLIQLNDLNKIRLEAYESSKIYKERTKSFHDKKIVSRDFKVGDQ 1661
Query: 2181 VL--KRRISQQPDPRGKWTPNYEGPYVVKKAFSGGALILTHMDGVELPNPVNADIVKKY 2237
VL R+ P GK + GP+ V GA+ L +G VN +KKY
Sbjct: 1662 VLLFNSRLRLFP---GKLKSRWSGPFSVTAVRPYGAITLAGKNG---DFTVNGQRLKKY 1714
Score = 39.3 bits (90), Expect = 0.026
Identities = 27/107 (25%), Positives = 52/107 (48%), Gaps = 6/107 (5%)
Query: 181 DKYNGLTC--PQNHIVKYVRKMGNYKDN----DSLMIHYFQDSLMEDAAEWYTSLSKDDV 234
+K++GL P +H+ ++ R K N D + F SL + A +W SL + +
Sbjct: 52 NKFHGLPMEDPLDHLDEFDRLCSLTKINRVSEDGFKLRLFPFSLGDKAHQWEKSLPQGSI 111
Query: 235 HTFDELAAAFKSHYGFNTRLKPNREFLRSLSQKKEESFREYAQRWRG 281
++++ AF + + N+R R + +Q E+F E +R++G
Sbjct: 112 TSWNDCKKAFLAKFFSNSRTARLRNDISGFTQTNNETFYEAWERFKG 158
>At2g10780 pseudogene
Length = 1611
Score = 266 bits (680), Expect = 1e-70
Identities = 156/461 (33%), Positives = 248/461 (52%), Gaps = 18/461 (3%)
Query: 1147 KIGATLEEGVKQKIIQLLREYPDIFAWSYEDMPGL-DPMIVEHRIPTKPECPPVRQKLRR 1205
++GA+ E K I ++ E+ D+FA P DP +E +P P+ + R
Sbjct: 615 EVGASAE----LKDIPIVNEFSDVFAAVSGVPPDRSDPFTIE----LEPGTTPISKAPYR 666
Query: 1206 THPDMALKIKSEVQKQIDAGFLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKD 1265
P K+K ++++ +D GF+ P W A ++ V KKDG R+C+D+R LNK + K+
Sbjct: 667 MAPAEMAKLKKQLEELLDKGFIRPSSSP-WGAPVLFVKKKDGSFRLCIDYRGLNKVTVKN 725
Query: 1266 NFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGL 1325
+PLP ID L+D ++ FS +D SGY+QI + P D KT+F T + F + VMPFGL
Sbjct: 726 KYPLPRIDELMDQLGGAQWFSKIDLASGYHQIPIEPTDVRKTAFRTRYDHFEFVVMPFGL 785
Query: 1326 INAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSADEEQHVEYLTKMFERLRKYKLRLNP 1385
NA A + + M +F D + + V ++++D++V S E H E+L + ERLR+++L
Sbjct: 786 TNAPAAFMKMMNGVFRDFLDEFVIIFINDILVYSKSWEAHQEHLRAVLERLREHELFAKL 845
Query: 1386 NKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISH 1445
+KC+F RS LG ++S +G+ VDP+K+R+I+E P P+ ++R FLG Y RF+
Sbjct: 846 SKCSFWQRSVGFLGHVISDQGVSVDPEKIRSIKEWPRPRNATEIRSFLGLAGYYRRFVMS 905
Query: 1446 MTATCGPIFKLLRKNQPIVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLIMYLAVFDES 1505
+ P+ +L K+ W+DEC+++F +K L P+LV P EG P +Y
Sbjct: 906 FASMAQPLTRLTGKDTAFNWSDECEKSFLELKAMLTNAPVLVLPEEGEPYTVYTDASIVG 965
Query: 1506 MGCVLGQQDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWL 1565
+GCVL Q K I Y S++ E Y + A+ + K R YL +
Sbjct: 966 LGCVLMQ------KGSVIAYASRQLRKHEKNYPTHDLEMAAVVFFLKIWRSYLYGAKVQI 1019
Query: 1566 ISRMDPIKYIFEKAAVTGKIARWQMLLSEY--DIVFKTQKA 1604
+ +KYIF + + + RW L+++Y DI + KA
Sbjct: 1020 YTDHKSLKYIFTQPELNLRQRRWMELVADYNLDIAYHPGKA 1060
Score = 95.9 bits (237), Expect = 2e-19
Identities = 82/365 (22%), Positives = 157/365 (42%), Gaps = 28/365 (7%)
Query: 1876 CVDEHEA--EQLVHDVHDGTFGTHATGHTMSRKLLRAGYYWMAMEHDCYQYARKCHKCQI 1933
CV A E+++ + H F H + M R L R Y+W+ M+ D ++ KC CQ+
Sbjct: 1152 CVPNDRALKEEILREAHQSKFSIHPGSNKMYRDLKRY-YHWVGMKKDVARWVAKCPTCQL 1210
Query: 1934 YADKIHVPPHALNVMSSP-WPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASY 1992
+ VP L + P W + +D + + + H + V +D TK +
Sbjct: 1211 VKAEHQVPSGLLQNLPIPEWKWDHITMDFVTGLPTGIKSKHNAVWVVVDRLTKSAHFMAI 1270
Query: 1993 TNVT-KQVVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQ 2051
++ +++A+ + I+ +G+P I++D T + +A + + S+ Y PQ
Sbjct: 1271 SDKDGAEIIAEKYIDEIVRLHGIPVSIVSDRDTRFTSKFWKAFQKALGTRVNLSTAYHPQ 1330
Query: 2052 MNGAVEAANKNIKRIVQKMVTTY-KDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAV 2110
+ E + ++ +++ V + +W + L Y + ++S G +P+ +YG
Sbjct: 1331 TDEQSERTIQTLEDMLRACVLDWGGNWEKYLRLVEFAYNNSFQASIGMSPYEALYGRACR 1390
Query: 2111 LPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGHSYQARMKAAFDKKV 2170
PL + E +L +++ ++ K +A Q R K+ +K+
Sbjct: 1391 TPL-----CWTPVGERRLFGPTIVDETTERMKFLKIKLKEA-------QDRQKSYANKRR 1438
Query: 2171 NPREFKVGELVLKRRISQQP----DPRGKWTPNYEGPYVVKKAFSGGALILTHMDGVELP 2226
EF+VG+LV + ++ + R K +P Y GPY V + A L +LP
Sbjct: 1439 KELEFQVGDLVYLKAMTYKGAGRFTSRKKLSPRYVGPYKVIERVGAVAYKL------DLP 1492
Query: 2227 NPVNA 2231
+NA
Sbjct: 1493 PKLNA 1497
Score = 32.0 bits (71), Expect = 4.2
Identities = 26/131 (19%), Positives = 55/131 (41%), Gaps = 9/131 (6%)
Query: 209 LMIHYFQDSLMEDAAEWYTSLSK---DDVHTFDELAAAFKSHYGFNTRLKPNREFLRSLS 265
+ +H+ + DA W+ ++ K D+V +F + F Y F E
Sbjct: 215 IAVHFLEG----DAHNWWLTVEKRRGDEVRSFADFEDEFNKKY-FPPEAWDRLECAYLDL 269
Query: 266 QKKEESFREYAQRWRGAAARITPALDEEE-MTQTFLKTLKKDYVERMIIAAPNNFSEMVT 324
+ + REY + + + L+EE+ + F++ L+ + ++ N+ SE+V
Sbjct: 270 VQGNRTVREYDEEFNRLRRYVGRELEEEQAQLRRFIRGLRIEIRNHCLVRTFNSVSELVE 329
Query: 325 MGTRLEEAVRD 335
+EE + +
Sbjct: 330 RAAMIEEGIEE 340
>At2g15100 putative retroelement pol polyprotein
Length = 1329
Score = 264 bits (674), Expect = 5e-70
Identities = 177/558 (31%), Positives = 269/558 (47%), Gaps = 68/558 (12%)
Query: 1730 NQIKGEWETHHAKLIPYHDYARRLLTYFTKVELHHIPRDENQMADALATLSSMFRVNHWN 1789
N+ GE+E A + Y + R + F + EL IPR EN A+ALA L+S F V
Sbjct: 790 NRYSGEYEAKDACMEAYLNLVREVSGRFEQFELTRIPRAENSAANALAALASTFEVTLPR 849
Query: 1790 DVPI------------------------IKGQRLERPSHVFAIGDVIDQA---------- 1815
+P+ + Q E H + I A
Sbjct: 850 VIPVETISQPSIRLDEISFVTTRAMRRRLDAQSAENGLHQLGDDEEISDAVHPTEIVENQ 909
Query: 1816 --GENVVGYRP----------WYYDIKQFLLSREYPPGASKQDKKTLRRLAGRFLLDGDI 1863
+N P W I+ ++L+ P A K + L+ RF + DI
Sbjct: 910 SLPDNHNAPLPDQPPHDWGADWREPIRDYILNGTLP--AEKWAARKLKATCARFCIANDI 967
Query: 1864 LYKRNYDMVLLRCVDEHEAEQLVHDVHDGTFGTHATGHTMSRKLLRAGYYWMAMEHDCYQ 1923
LY+R + C+ + ++ +VHDGT G H G +++ K+ + GYYW + DC
Sbjct: 968 LYRRIFSAPDAVCIFGEQTRTVMKEVHDGTCGNHTGGRSLAFKVRKYGYYWPTLVADCEA 1027
Query: 1924 YARKCHKCQIYADKIHVPPHALNVMSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYF 1983
YARKC +CQ +A I P L +S+P+PF W +D++G +
Sbjct: 1028 YARKCEQCQKHAPLILQPAELLTTVSAPYPFMKWLMDIVGPLHVS--------------- 1072
Query: 1984 TKWVEAASYTNVTKQVVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHH 2043
T+ VEAA+Y+N+T V FI +IICR+G+P +I+TDNG+ + + CEE++I
Sbjct: 1073 TRGVEAAAYSNITHVQVWNFIWKDIICRHGLPYEIVTDNGSQFISEQFEVFCEEWQIRLS 1132
Query: 2044 NSSPYRPQMNGAVEAANKNIKRIVQKMVTTYKD-WHEMLPYALHGYRTTVRSSTGATPFS 2102
+S+P PQ NG EA NK I ++K + YK W L L RTT R +T TPFS
Sbjct: 1133 HSTPRYPQGNGQAEAMNKTIISNLKKKLNAYKGAWFGELQNVLWAVRTTPRRATDETPFS 1192
Query: 2103 LVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGHSYQARM 2162
L+YGMEAV+P E+++PS R I + +E E + D ++ I+E+R A+AR +Y
Sbjct: 1193 LIYGMEAVIPAEIKVPSARRIRNPQ-NETENNEMIIDVIDTIDERRNRALARMQNYHNAG 1251
Query: 2163 KAAFDKKVNPREFKVGELVLKRRISQQPDPR--GKWTPNYEGPYVVKKAFSGGALILTHM 2220
++ V R F+VG LVL RR+ Q + GK ++EGPY + G L +M
Sbjct: 1252 ARYYNSNVRNRSFEVGTLVL-RRVQQNKAEKGAGKLGISWEGPYKITHVVRNGVYRLINM 1310
Query: 2221 DGVELPNPVNADIVKKYF 2238
+G + N+ +K+++
Sbjct: 1311 EGKTVRRAWNSMHLKRFY 1328
Score = 172 bits (436), Expect = 2e-42
Identities = 84/151 (55%), Positives = 106/151 (69%)
Query: 1178 MPGLDPMIVEHRIPTKPECPPVRQKLRRTHPDMALKIKSEVQKQIDAGFLMTVEYPEWVA 1237
M G+ ++ H + P PV+QK R+ PD A + EV + ++ G + V+YPEW+A
Sbjct: 412 MTGISTEVISHELNVDPTFKPVKQKRRKLGPDRAQAVNIEVVRLLEVGRIREVKYPEWLA 471
Query: 1238 NIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQI 1297
N V V KK+GK R+CVDF DLNKA KD FPLPHID LV++T ++ SFMD FSGYNQI
Sbjct: 472 NPVVVKKKNGKWRVCVDFTDLNKACSKDFFPLPHIDRLVESTTGHEMLSFMDAFSGYNQI 531
Query: 1298 KMSPEDREKTSFITPWGTFCYKVMPFGLINA 1328
M+PED+EKTSFIT GT+ YKVMPFGL NA
Sbjct: 532 LMNPEDQEKTSFITECGTYYYKVMPFGLKNA 562
Score = 85.5 bits (210), Expect = 3e-16
Identities = 43/146 (29%), Positives = 84/146 (57%), Gaps = 10/146 (6%)
Query: 1464 VWNDECQEAFDSIKNYLLEPPILVPPVEGRPLIMYLAVFDESMGCVLGQQDETGKKEHAI 1523
+WN+ C+EAF +K YL EP +L G L +Y+AV + ++ V + + + K+ I
Sbjct: 630 IWNESCEEAFKQLKRYLSEPSVLAKREFGEQLFLYIAVSESAVTGVQVRVERSDKR--PI 687
Query: 1524 YYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTG 1583
+Y+ +TRY M+EK A+ AA++LR Y +H +++ + P++ I +G
Sbjct: 688 FYV-------KTRYPMMEKLALAVVTAARKLRPYFQSHPIVVLTSL-PLRTILHSPTQSG 739
Query: 1584 KIARWQMLLSEYDIVFKTQKAIKGSI 1609
++ +W + LSE+D+ F+ + ++ ++
Sbjct: 740 RLGKWAIELSEFDLEFRARTSLNSTM 765
Score = 47.0 bits (110), Expect = 1e-04
Identities = 35/107 (32%), Positives = 51/107 (46%), Gaps = 6/107 (5%)
Query: 843 SSLNVMPKTTLDQLSYRGTPLRR---STFLVKAFDGSRKNVLGEIDLPITIGPENFLVTF 899
S+ N PK + + T LR+ T + S LG + LP+T +V F
Sbjct: 314 SASNAAPKAPQPATTKKPTELRKPAAGTCTTMLCETSMS--LGTVVLPVTAQGVVKMVEF 371
Query: 900 QVMDINASYSCLLGRPWIHDAGAVTSTLHQKLKF-VKNGKLVTIHGE 945
V D A+Y+ +LG PW+++ V ST HQ +KF GK+ I E
Sbjct: 372 TVFDRPAAYNVILGTPWLYEMKVVPSTYHQCVKFPTPVGKMTGISTE 418
>At4g10580 putative reverse-transcriptase -like protein
Length = 1240
Score = 263 bits (672), Expect = 9e-70
Identities = 150/456 (32%), Positives = 246/456 (53%), Gaps = 13/456 (2%)
Query: 1161 IQLLREYPDIFAWSYEDMPGLDPMIVE-HRIPTKPECPPVRQKLRRTHPDMALKIKSEVQ 1219
I++++E+ D+F + + GL P + I +P P+ + R P ++K +++
Sbjct: 457 IRVVQEFQDVF----QSLQGLPPSQSDPFTIELEPGTAPLSKAPYRMAPAEMAELKKQLK 512
Query: 1220 KQIDAGFLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNT 1279
+ GF+ P W A ++ V KKDG R+C+D+R+LN+ + K+ +PLP ID L+D
Sbjct: 513 DLLGKGFIRPSTSP-WGAPVLFVKKKDGSFRLCIDYRELNRVTVKNRYPLPRIDELLDQL 571
Query: 1280 AQSKVFSFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTL 1339
+ FS +D SGY+QI ++ D KT+F T +G F + VMPFGL NA A + R M ++
Sbjct: 572 RGATCFSKIDLTSGYHQIPIAEADVRKTAFRTRYGHFEFVVMPFGLTNAPAVFMRLMNSV 631
Query: 1340 FHDMIHKEVEVYVDDMIVKSADEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLG 1399
F + + + V +++DD++V S E+ +L ++ E+LR+ KL +KC+F R LG
Sbjct: 632 FQEFLDEFVIIFIDDILVYSKSPEEQEVHLRRVMEKLREQKLFAKLSKCSFWQREMGFLG 691
Query: 1400 FIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRK 1459
IVS +G+ VDP+K+ AIR+ P P ++R FLG Y RF+ + P+ KL K
Sbjct: 692 HIVSAEGVSVDPEKIEAIRDWPRPTNATEIRSFLGWAGYYRRFVKGFASMAQPMTKLTGK 751
Query: 1460 NQPIVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLIMYLAVFDESMGCVLGQQDETGKK 1519
+ P VW+ EC+E F S+K L P+L P G+P ++Y +GCVL Q +
Sbjct: 752 DVPFVWSQECEEGFVSLKEMLTSTPVLALPEHGQPYMVYTDASRVGLGCVLMQHGK---- 807
Query: 1520 EHAIYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKA 1579
I Y S++ E Y + A+ +A K R YL + + +KYIF +
Sbjct: 808 --VIAYASRQLMKHEGNYPTHDLEMAAVIFALKIWRSYLYGGKVQVFTDHKSLKYIFTQP 865
Query: 1580 AVTGKIARWQMLLSEYDIVFKTQKAIKGSILADHLA 1615
+ + RW L+++YD+ K +++ D L+
Sbjct: 866 ELNLRQRRWMELVADYDLEIAYHPG-KANVVVDALS 900
Score = 32.7 bits (73), Expect = 2.5
Identities = 28/113 (24%), Positives = 50/113 (43%), Gaps = 10/113 (8%)
Query: 1908 LRAGYYWMAMEHDCYQYARKCHKCQIYADKIHVPPHALNVMSSP-WPFSMWGIDMIGRIE 1966
L+ Y W+ M+ D + +C CQ+ + V L + P W + +D++ +
Sbjct: 965 LKRYYQWVGMKMDVANWVAECDVCQLVKAEHQVLGGMLQSLPIPEWKWDFITMDLV--VG 1022
Query: 1967 PKASNGHRFILVAIDYFTKWVEAASYTNVTK----QVVAKFIKNNIICRYGVP 2015
+ S I V +D TK +A + + K V+AK + I+ +GVP
Sbjct: 1023 LRVSRTKDAIWVIVDRLTK---SAHFLAIRKTDGAAVLAKKFVSEIVKLHGVP 1072
>At2g04670 putative retroelement pol polyprotein
Length = 1411
Score = 259 bits (661), Expect = 2e-68
Identities = 149/456 (32%), Positives = 244/456 (52%), Gaps = 13/456 (2%)
Query: 1161 IQLLREYPDIFAWSYEDMPGLDPMIVE-HRIPTKPECPPVRQKLRRTHPDMALKIKSEVQ 1219
I++++E+ D+F + + GL P + I +P P+ + R P ++K +++
Sbjct: 483 IRVIQEFEDVF----QSLQGLPPSRSDPFTIELEPGTAPLSKAPYRMAPAEMTELKKQLE 538
Query: 1220 KQIDAGFLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNT 1279
+ GF+ P W A ++ V KKDG R+C+D+R LN + K+ +PLP ID L+D
Sbjct: 539 DLLGKGFIRPSTSP-WGAPVLFVKKKDGSFRLCIDYRGLNWVTVKNKYPLPRIDELLDQL 597
Query: 1280 AQSKVFSFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTL 1339
+ FS +D SGY+QI ++ D KT+F T +G F + VMPF L NA A + R M ++
Sbjct: 598 RGATCFSKIDLTSGYHQIPIAEADVRKTAFRTRYGHFEFVVMPFALTNAPAAFMRLMNSV 657
Query: 1340 FHDMIHKEVEVYVDDMIVKSADEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLG 1399
F + + + V +++DD++V S E+H +L ++ E+LR+ KL +KC+F R LG
Sbjct: 658 FQEFLDEFVIIFIDDILVYSKSPEEHEVHLRRVMEKLREQKLFAKLSKCSFWQREIGFLG 717
Query: 1400 FIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRK 1459
IVS +G+ VDP+K+ AIR+ P P ++R FL Y RF+ + P+ KL K
Sbjct: 718 HIVSAEGVSVDPEKIEAIRDWPRPTNATEIRSFLRLTGYYRRFVKGFASMAQPMTKLTGK 777
Query: 1460 NQPIVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLIMYLAVFDESMGCVLGQQDETGKK 1519
+ P VW+ EC+E F S+K L P+L P G+P ++Y +GCVL Q+ +
Sbjct: 778 DVPFVWSPECEEGFVSLKEMLTSTPVLALPEHGQPYMVYTDASRVGLGCVLMQRGK---- 833
Query: 1520 EHAIYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKA 1579
I Y S++ E Y + + +A K R YL + + +KYIF +
Sbjct: 834 --VIAYASRQLRKHEGNYPTHDLEMAVVIFALKIWRSYLYGGKVQVFTDHKSLKYIFNQP 891
Query: 1580 AVTGKIARWQMLLSEYDIVFKTQKAIKGSILADHLA 1615
+ + RW L+++YD+ K +++AD L+
Sbjct: 892 ELNLRQMRWMELVADYDLEIAYHPG-KANVVADALS 926
Score = 77.0 bits (188), Expect = 1e-13
Identities = 76/336 (22%), Positives = 135/336 (39%), Gaps = 57/336 (16%)
Query: 1878 DEHEAEQLVHDVHDGTFGTHATGHTMSRKLLRAGYYWMAMEHDCYQYARKCHKCQIYADK 1937
DE +++ + H F H M R L R Y W+ M+ D + +C CQ+ +
Sbjct: 1012 DEELRREILSEAHASMFSIHPGATKMYRDLKRY-YQWVGMKRDVANWVAECDVCQLVKAE 1070
Query: 1938 IHVPPHALNVMSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTK 1997
VP ++W V +D TK +A + + K
Sbjct: 1071 HQVPD------------AIW--------------------VIMDRLTK---SAHFLAIRK 1095
Query: 1998 Q----VVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMN 2053
V+AK + I+ +GVP I++D + +A + + S+ Y PQ +
Sbjct: 1096 TDGAAVLAKKYVSEIVKLHGVPVSIVSDRDSKFTFAFWRAFQAKMGTKVQMSTAYHPQTD 1155
Query: 2054 GAVEAANKNIKRIVQKMVTTY-KDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLP 2112
G E + ++ +++ V + W + L Y + ++S G PF +YG P
Sbjct: 1156 GQSERTIQTLEDMLRMCVLDWGGHWADHLSLVEFAYNNSYQASIGMAPFEALYGRPCWTP 1215
Query: 2113 LEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGHSYQARMKAAFDKKVNP 2172
L + E + A++ Q +++ +++ +A AR SY DK+
Sbjct: 1216 LR-----WTQVEERSIYGADYVQETTERIRVLKLNMKEAQARQRSYA-------DKRRRE 1263
Query: 2173 REFKVGELV-LKRRISQQPDP---RGKWTPNYEGPY 2204
EF+VG+ V LK + + P+ K +P Y GP+
Sbjct: 1264 LEFEVGDRVYLKMAMLRGPNRSILETKLSPRYMGPF 1299
>At3g11970 hypothetical protein
Length = 1499
Score = 251 bits (640), Expect = 4e-66
Identities = 159/502 (31%), Positives = 264/502 (51%), Gaps = 19/502 (3%)
Query: 1120 QEKKAIQPHQEEIELINIGTEENKREIKI----GATLEEGVKQKIIQLLREYPDIFAWSY 1175
Q+ + +Q Q ++ ++ + E ++ T E G + + ++L EYPDIF
Sbjct: 521 QKLQKLQEDQVQLAMLCVQEVSESTEGELCTINALTSELGEESVVEEVLNEYPDIFI--- 577
Query: 1176 EDMPGLDPMIVEH--RIPTKPECPPVRQKLRRTHPDMALKIKSEVQKQIDAGFLMTVEYP 1233
+ L P +H +I PV Q+ R +I V+ + G + P
Sbjct: 578 -EPTALPPFREKHNHKIKLLEGSNPVNQRPYRYSIHQKNEIDKLVEDLLTNGTVQASSSP 636
Query: 1234 EWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSG 1293
+ + +V V KKDG R+CVD+R+LN + KD+FP+P I+ L+D + +FS +D +G
Sbjct: 637 -YASPVVLVKKKDGTWRLCVDYRELNGMTVKDSFPIPLIEDLMDELGGAVIFSKIDLRAG 695
Query: 1294 YNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYVD 1353
Y+Q++M P+D +KT+F T G F Y VMPFGL NA AT+Q M +F + K V V+ D
Sbjct: 696 YHQVRMDPDDIQKTAFKTHSGHFEYLVMPFGLTNAPATFQGLMNFIFKPFLRKFVLVFFD 755
Query: 1354 DMIVKSADEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDK 1413
D++V S+ E+H ++L ++FE +R KL +KC F V + LG +S +GIE DP K
Sbjct: 756 DILVYSSSLEEHRQHLKQVFEVMRANKLFAKLSKCAFAVPKVEYLGHFISAQGIETDPAK 815
Query: 1414 VRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPIVWNDECQEAF 1473
++A++E P P T KQ+RGFLG Y RF+ GP+ L K W Q+AF
Sbjct: 816 IKAVKEWPQPTTLKQLRGFLGLAGYYRRFVRSFGVIAGPL-HALTKTDAFEWTAVAQQAF 874
Query: 1474 DSIKNYLLEPPILVPPVEGRPLIMYLAVFDESMGCVLGQQDETGKKEHAIYYLSKKFTDC 1533
+ +K L + P+L P+ + ++ + +G VL Q+ H + Y+S++
Sbjct: 875 EDLKAALCQAPVLSLPLFDKQFVVETDACGQGIGAVLMQEG------HPLAYISRQLKGK 928
Query: 1534 ETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGKIARWQMLLS 1593
+ ++ EK A+ +A ++ RHYL+ + + +KY+ E+ T +W L
Sbjct: 929 QLHLSIYEKELLAVIFAVRKWRHYLLQSHFIIKTDQRSLKYLLEQRLNTPIQQQWLPKLL 988
Query: 1594 EYDIVFKTQKAIKGSILADHLA 1615
E+D + ++ K +++AD L+
Sbjct: 989 EFDYEIQYRQG-KENVVADALS 1009
Score = 84.0 bits (206), Expect = 9e-16
Identities = 86/327 (26%), Positives = 138/327 (41%), Gaps = 25/327 (7%)
Query: 1889 VHDGTFGTHATGHTMSRKLLRAGYYWMAMEHDCYQYARKCHKCQIYADKIHVPPHALNVM 1948
+H G H+ G ++ + ++ +YW M D Y R C CQ P L +
Sbjct: 1088 LHGSGVGGHS-GRDVTHQRVKGLFYWKGMIKDIQAYIRSCGTCQQCKSDPAASPGLLQPL 1146
Query: 1949 SSPWPFSMWGIDMIGRIEP-KASNGHRFILVAIDYFTKWVEAASYTN-VTKQVVAKFIKN 2006
P P ++W + IE S G I+V +D +K + ++ + VA +
Sbjct: 1147 --PIPDTIWSEVSMDFIEGLPVSGGKTVIMVVVDRLSKAAHFIALSHPYSALTVAHAYLD 1204
Query: 2007 NIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAANKNIKRI 2066
N+ +G P+ I++D + + + +S Y PQ +G E N+ ++
Sbjct: 1205 NVFKLHGCPTSIVSDRDVVFTSEFWREFFTLQGVALKLTSAYHPQSDGQTEVVNRCLETY 1264
Query: 2067 VQKMVTTYKD-WHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSLRVIME 2125
++ M W + L A + Y T SS+ TPF +VYG V P V +P L E
Sbjct: 1265 LRCMCHDRPQLWSKWLALAEYWYNTNYHSSSRMTPFEIVYGQ--VPP--VHLPYLP--GE 1318
Query: 2126 AKLS-EAEWCQSRYDQLNLIEEKRMDAMARGHSYQARMKAAFDKKVNPREFKVGELVL-- 2182
+K++ A Q R D L ++ M A Q RMK D+ REF++G+ V
Sbjct: 1319 SKVAVVARSLQEREDMLLFLKFHLMRA-------QHRMKQFADQHRTEREFEIGDYVYVK 1371
Query: 2183 ---KRRISQQPDPRGKWTPNYEGPYVV 2206
R+ S K +P Y GPY +
Sbjct: 1372 LQPYRQQSVVMRANQKLSPKYFGPYKI 1398
>At2g07660 putative retroelement pol polyprotein
Length = 949
Score = 251 bits (640), Expect = 4e-66
Identities = 144/414 (34%), Positives = 228/414 (54%), Gaps = 16/414 (3%)
Query: 1147 KIGATLEEGVKQKIIQLLREYPDIFAWSYEDMPGL-DPMIVEHRIPTKPECPPVRQKLRR 1205
++GA+ E K I ++ E+ D+FA P DP +E +P P+ + R
Sbjct: 110 EVGASAE----LKDILIVNEFSDVFAAVSGVPPDRSDPFTIE----LEPGTTPISKAPYR 161
Query: 1206 THPDMALKIKSEVQKQIDAGFLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKD 1265
P ++K ++++ + GF+ P W A ++ V KKDG R+C+D+R LNK + K+
Sbjct: 162 MAPAEMAELKKQLEELLAKGFIRPSSSP-WGAPVLFVKKKDGSFRLCIDYRGLNKVTVKN 220
Query: 1266 NFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGL 1325
+PLP ID L+D ++ FS +D SGY+QI + P D KT+F T +G F + VMPFGL
Sbjct: 221 KYPLPRIDELMDQLGGAQWFSKIDLASGYHQIPIEPTDVRKTAFRTRYGHFEFVVMPFGL 280
Query: 1326 INAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSADEEQHVEYLTKMFERLRKYKLRLNP 1385
NA A + + M +F D + + V +++DD++V S E H E+L + ERLR+++L
Sbjct: 281 TNAPAAFMKMMNGVFRDFLDEFVIIFIDDILVHSKSWEAHQEHLRAVLERLREHELFAKL 340
Query: 1386 NKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISH 1445
+K +F RS LG ++S +G+ VDP+K+R+I+E P P+ ++R FLG Y RF+
Sbjct: 341 SKFSFWQRSVGFLGHVISDQGVSVDPEKIRSIKEWPRPRNATEIRSFLGLAGYYRRFVMS 400
Query: 1446 MTATCGPIFKLLRKNQPIVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLIMYLAVFDES 1505
+ P+ +L K+ W+DEC+++F +K L+ P+LV P EG P +Y
Sbjct: 401 FASMAQPLTRLTGKDTAFNWSDECEKSFLELKAMLINAPVLVLPEEGEPYTVYTDASIVG 460
Query: 1506 MGCVLGQQDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLV 1559
+GCVL Q K I Y S++ E Y + A+ +A K R YL+
Sbjct: 461 LGCVLMQ------KGSVIAYASRQLRKHEKNYPTHDLEMAAVVFALKIWRSYLI 508
Score = 100 bits (249), Expect = 1e-20
Identities = 79/340 (23%), Positives = 149/340 (43%), Gaps = 22/340 (6%)
Query: 1876 CVDEHEA--EQLVHDVHDGTFGTHATGHTMSRKLLRAGYYWMAMEHDCYQYARKCHKCQI 1933
CV A E+++ + H F H + M R L R Y+W+ M D ++ KC CQ+
Sbjct: 544 CVPNDRALKEEILREAHQSKFSIHPGSNKMYRDLKRY-YHWVGMRKDVARWVAKCPTCQL 602
Query: 1934 YADKIHVPPHAL-NVMSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASY 1992
+ VP L N+ S W + +D + R+ + H + V +D TK +
Sbjct: 603 VKAEHQVPSGLLQNLPISEWKWDHITMDFVTRLPTGIKSKHNAVWVVVDRLTKSAHFMAI 662
Query: 1993 TNVT-KQVVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQ 2051
++ +++A+ + I+ +G+P I++D T + A + + S+ Y PQ
Sbjct: 663 SDKDGAEIIAEKYIDEIMRLHGIPVSIVSDRDTRFTSKFWNAFQKALGTRVNLSTAYHPQ 722
Query: 2052 MNGAVEAANKNIKRIVQKMVTTY-KDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAV 2110
+G E + ++ +++ V + +W + L Y + ++S G +P+ +YG
Sbjct: 723 TDGQSERTIQTLEDMLRACVLDWGGNWEKYLRLIEFAYNNSFQASIGMSPYEALYGRACR 782
Query: 2111 LPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGHSYQARMKAAFDKKV 2170
PL + E +L +++ ++ K +A Q R K+ +K+
Sbjct: 783 TPL-----CWTPVGERRLFGPTIVDETTERMKFLKIKLKEA-------QDRQKSYANKRR 830
Query: 2171 NPREFKVGELVLKRRISQQP----DPRGKWTPNYEGPYVV 2206
EF+VG+LV + ++ + R K +P Y GPY V
Sbjct: 831 KELEFQVGDLVYLKAMTYKGAGRFTSRKKLSPRYVGPYKV 870
>At1g36590 hypothetical protein
Length = 1499
Score = 251 bits (640), Expect = 4e-66
Identities = 159/502 (31%), Positives = 264/502 (51%), Gaps = 19/502 (3%)
Query: 1120 QEKKAIQPHQEEIELINIGTEENKREIKI----GATLEEGVKQKIIQLLREYPDIFAWSY 1175
Q+ + +Q Q ++ ++ + E ++ T E G + + ++L EYPDIF
Sbjct: 521 QKLQKLQEDQVQLAMLCVQEVSESTEGELCTINALTSELGEESVVEEVLNEYPDIFI--- 577
Query: 1176 EDMPGLDPMIVEH--RIPTKPECPPVRQKLRRTHPDMALKIKSEVQKQIDAGFLMTVEYP 1233
+ L P +H +I PV Q+ R +I V+ + G + P
Sbjct: 578 -EPTALPPFREKHNHKIKLLEGSNPVNQRPYRYSIHQKNEIDKLVEDLLTNGTVQASSSP 636
Query: 1234 EWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSG 1293
+ + +V V KKDG R+CVD+R+LN + KD+FP+P I+ L+D + +FS +D +G
Sbjct: 637 -YASPVVLVKKKDGTWRLCVDYRELNGMTVKDSFPIPLIEDLMDELGGAVIFSKIDLRAG 695
Query: 1294 YNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYVD 1353
Y+Q++M P+D +KT+F T G F Y VMPFGL NA AT+Q M +F + K V V+ D
Sbjct: 696 YHQVRMDPDDIQKTAFKTHSGHFEYLVMPFGLTNAPATFQGLMNFIFKPFLRKFVLVFFD 755
Query: 1354 DMIVKSADEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDK 1413
D++V S+ E+H ++L ++FE +R KL +KC F V + LG +S +GIE DP K
Sbjct: 756 DILVYSSSLEEHRQHLKQVFEVMRANKLFAKLSKCAFAVPKVEYLGHFISAQGIETDPAK 815
Query: 1414 VRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPIVWNDECQEAF 1473
++A++E P P T KQ+RGFLG Y RF+ GP+ L K W Q+AF
Sbjct: 816 IKAVKEWPQPTTLKQLRGFLGLAGYYRRFVRSFGVIAGPL-HALTKTDAFEWTAVAQQAF 874
Query: 1474 DSIKNYLLEPPILVPPVEGRPLIMYLAVFDESMGCVLGQQDETGKKEHAIYYLSKKFTDC 1533
+ +K L + P+L P+ + ++ + +G VL Q+ H + Y+S++
Sbjct: 875 EDLKAALCQAPVLSLPLFDKQFVVETDACGQGIGAVLMQEG------HPLAYISRQLKGK 928
Query: 1534 ETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGKIARWQMLLS 1593
+ ++ EK A+ +A ++ RHYL+ + + +KY+ E+ T +W L
Sbjct: 929 QLHLSIYEKELLAVIFAVRKWRHYLLQSHFIIKTDQRSLKYLLEQRLNTPIQQQWLPKLL 988
Query: 1594 EYDIVFKTQKAIKGSILADHLA 1615
E+D + ++ K +++AD L+
Sbjct: 989 EFDYEIQYRQG-KENVVADALS 1009
Score = 79.3 bits (194), Expect = 2e-14
Identities = 85/327 (25%), Positives = 138/327 (41%), Gaps = 25/327 (7%)
Query: 1889 VHDGTFGTHATGHTMSRKLLRAGYYWMAMEHDCYQYARKCHKCQIYADKIHVPPHALNVM 1948
+H G H+ G ++ + ++ +Y M D Y R C CQ P L +
Sbjct: 1088 LHGSGVGGHS-GRDVTHQRVKGLFYSKGMIKDIQAYIRSCGTCQQCKSDPAASPGLLQPL 1146
Query: 1949 SSPWPFSMWGIDMIGRIEP-KASNGHRFILVAIDYFTKWVEAASYTN-VTKQVVAKFIKN 2006
P P ++W + IE S G I+V +D +K + ++ + VA+ +
Sbjct: 1147 --PIPDTIWSEVSMDFIEGLPVSGGKTVIMVVVDRLSKAAHFIALSHPYSALTVAQAYLD 1204
Query: 2007 NIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAANKNIKRI 2066
N+ +G P+ I++D + + + +S Y PQ +G E N+ ++
Sbjct: 1205 NVFKLHGCPTSIVSDRDVVFTSEFWREFFTLQGVALKLTSAYHPQSDGQTEVVNRCLETY 1264
Query: 2067 VQKMVTTYKD-WHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSLRVIME 2125
++ M W + L A + Y T SS+ TPF +VYG V P V +P L E
Sbjct: 1265 LRCMCHDRPQLWSKWLALAEYWYNTNYHSSSRMTPFEIVYGQ--VPP--VHLPYLP--GE 1318
Query: 2126 AKLS-EAEWCQSRYDQLNLIEEKRMDAMARGHSYQARMKAAFDKKVNPREFKVGELVL-- 2182
+K++ A Q R D L ++ M A Q RMK D+ REF++G+ V
Sbjct: 1319 SKVAVVARSLQEREDMLLFLKFHLMRA-------QHRMKQFADQHRTEREFEIGDYVYVK 1371
Query: 2183 ---KRRISQQPDPRGKWTPNYEGPYVV 2206
R+ S K +P Y GPY +
Sbjct: 1372 LQPYRQQSVVMRANQKLSPKYFGPYKI 1398
>At2g14650 putative retroelement pol polyprotein
Length = 1328
Score = 249 bits (637), Expect = 1e-65
Identities = 153/501 (30%), Positives = 253/501 (49%), Gaps = 25/501 (4%)
Query: 1118 LEQEKKAIQPHQEEIELINIGTEENKREIKIGATLEEGVKQKIIQLLREYPDIFAWSYED 1177
L+ + + + E L+ G + I A E + +K + E+ D+F +
Sbjct: 401 LDCHRGRVSFERPEGSLVYQGVRPTSGSLVISAVQAEKMIEKGCEAYLEFEDVF----QS 456
Query: 1178 MPGLDPMIVE-HRIPTKPECPPVRQKLRRTHPDMALKIKSEVQKQIDAGFLMTVEYPEWV 1236
+ GL P + I +P P+ + R P ++K +++ + A L
Sbjct: 457 LQGLPPSRSDPFTIELEPGTAPLSKAPYRMAPAEMAELKKQLEDLLGAPVLF-------- 508
Query: 1237 ANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQ 1296
V KKDG R+C+D+R LN + K+ +PLP ID L+D + FS +D SGY+
Sbjct: 509 -----VKKKDGSFRLCIDYRGLNWVTVKNKYPLPRIDELLDQLRGATCFSKIDLTSGYHL 563
Query: 1297 IKMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMI 1356
I ++ D KT+F T +G F + VMPFGL NA A + R M ++F +++ + V +++DD++
Sbjct: 564 IPIAEADVRKTAFRTRYGHFEFVVMPFGLTNAPAAFMRLMNSVFQEVLDEFVIIFIDDIL 623
Query: 1357 VKSADEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRA 1416
V S E+H +L ++ E+LR+ KL +KC+F R LG IVS +G+ VDP+K+ A
Sbjct: 624 VYSKSLEEHEVHLRRVMEKLREQKLFAKLSKCSFWQREMGFLGHIVSAEGVSVDPEKIEA 683
Query: 1417 IREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPIVWNDECQEAFDSI 1476
IR+ P ++R FLG Y RF+ + P+ KL K+ P VW+ EC+E F S+
Sbjct: 684 IRDWHTPTNATEIRSFLGLAGYYRRFVKGFASMAQPMTKLTGKDVPFVWSPECEEGFVSL 743
Query: 1477 KNYLLEPPILVPPVEGRPLIMYLAVFDESMGCVLGQQDETGKKEHAIYYLSKKFTDCETR 1536
K L P+L P G P ++Y +GCVL Q+ + I Y S++ E
Sbjct: 744 KEMLTSTPVLALPEHGEPYMVYTDASGVGLGCVLMQRGK------VIAYASRQLRKHEGN 797
Query: 1537 YTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGKIARWQMLLSEYD 1596
Y + A+ +A K R YL + + +KYIF + + + +W L+++YD
Sbjct: 798 YPTHDLEMAAVIFALKIWRSYLYGGNVQVFTDHKSLKYIFTQPELNLRQRQWMELVADYD 857
Query: 1597 IVFKTQKAIKGSILADHLAYQ 1617
+ K +++AD L+++
Sbjct: 858 LEIAYHPG-KANVVADALSHK 877
Score = 69.7 bits (169), Expect = 2e-11
Identities = 70/295 (23%), Positives = 123/295 (40%), Gaps = 27/295 (9%)
Query: 1920 DCYQYARKCHKCQIYADKIHVPPHALNVMSSP-WPFSMWGIDMIGRIEPKASNGHRFILV 1978
D + +C CQ+ + VP L + P W + ID + + S I V
Sbjct: 942 DVANWVAECDVCQLVKAEHQVPGGMLQSLPIPEWKWDFITIDFV--VGLPVSRTKDAIWV 999
Query: 1979 AIDYFTKWVEAASYTNVTKQ----VVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQAL 2034
+D TK +A + + K V+AK + I+ +GVP I++D + + +A
Sbjct: 1000 IVDRLTK---SAHFLAIRKTDGAAVLAKKYVSEIVKLHGVPVSIVSDRDSKFTSAFWRAF 1056
Query: 2035 CEEFKIEHHNSSPYRPQMNGAVEAANKNIKRIVQKMVTTY-KDWHEMLPYALHGYRTTVR 2093
E + S+ Y PQ G E + ++ +++ V + W + L Y +
Sbjct: 1057 QAEMGTKVQMSTAYHPQTYGQSERTIQTLEDMLRMCVLDWGGHWADHLSLVEFAYNNSYP 1116
Query: 2094 SSTGATPFSLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMA 2153
+S G PF +Y PL L + E + A++ Q +++ +++ +A
Sbjct: 1117 ASIGMAPFEALYERPCRTPL-----CLTQVGERSIYGADYVQETTERIRVLKLNMKEAQD 1171
Query: 2154 RGHSYQARMKAAFDKKVNPREFKVGELV-LKRRISQQPD---PRGKWTPNYEGPY 2204
R SY DK+ EF+VG+ V LK + + P+ K +P Y GP+
Sbjct: 1172 RQRSYA-------DKRRRELEFEVGDRVYLKMAMLRGPNRSISETKLSPRYMGPF 1219
>At1g35370 hypothetical protein
Length = 1447
Score = 241 bits (614), Expect = 5e-63
Identities = 160/497 (32%), Positives = 262/497 (52%), Gaps = 20/497 (4%)
Query: 1120 QEKKAIQPHQEEIELINIGTEENKREIKIGATLEEGVKQKIIQ-LLREYPDIFAWSYEDM 1178
Q+ +A Q + + + ++E + I A + V++ ++Q ++ E+PD+FA +
Sbjct: 503 QKTQADQIQLAMVCVREVVSDEEQEIGSISALTSDVVEESVVQNIVEEFPDVFAEPTDLP 562
Query: 1179 PGLDPMIVEHRIPTKPECPPVRQKLRRTHPDMALKIKSEVQKQIDAGFLMTVEYPEWVAN 1238
P + +H+I PV Q+ R +I VQ I +G + P + +
Sbjct: 563 PFREKH--DHKIKLLEGANPVNQRPYRYVVHQKDEIDKIVQDMIKSGTIQVSSSP-FASP 619
Query: 1239 IVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIK 1298
+V V KKDG R+CVD+ +LN + KD F +P I+ L+D S VFS +D +GY+Q++
Sbjct: 620 VVLVKKKDGTWRLCVDYTELNGMTVKDRFLIPLIEDLMDELGGSVVFSKIDLRAGYHQVR 679
Query: 1299 MSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVK 1358
M P+D +KT+F T G F Y VM FGL NA AT+Q M ++F D + K V V+ DD+++
Sbjct: 680 MDPDDIQKTAFKTHNGHFEYLVMLFGLTNAPATFQSLMNSVFRDFLRKFVLVFFDDILIY 739
Query: 1359 SADEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIR 1418
S+ E+H E+L +FE +R +KL F S + LG +S + IE DP K++A++
Sbjct: 740 SSSIEEHKEHLRLVFEVMRLHKL--------FAKGSKEHLGHFISAREIETDPAKIQAVK 791
Query: 1419 EMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPIVWNDECQEAFDSIKN 1478
E P P T KQVRGFLG Y RF+ + GP+ L K W+ E Q AFD++K
Sbjct: 792 EWPTPTTVKQVRGFLGFAGYYRRFVRNFGVIAGPL-HALTKTDGFCWSLEAQSAFDTLKA 850
Query: 1479 YLLEPPILVPPVEGRPLIMYLAVFDESMGCVLGQQDETGKKEHAIYYLSKKFTDCETRYT 1538
L P+L PV + ++ E+ C G + +K H + Y+S++ + +
Sbjct: 851 VLCNAPVLALPVFDKQFMV------ETDACGQGIRAVLMQKGHPLAYISRQLKGKQLHLS 904
Query: 1539 MLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGKIARWQMLLSEYDIV 1598
+ EK A +A ++ RHYL+ + + +KY+ E+ T +W L E+D
Sbjct: 905 IYEKELLAFIFAVRKWRHYLLPSHFIIKTDQRSLKYLLEQRLNTPVQQQWLPKLLEFDYE 964
Query: 1599 FKTQKAIKGSILADHLA 1615
+ ++ K +++AD L+
Sbjct: 965 IQYRQG-KENLVADALS 980
Score = 86.7 bits (213), Expect = 1e-16
Identities = 87/347 (25%), Positives = 148/347 (42%), Gaps = 26/347 (7%)
Query: 1899 TGHTMSRKLLRAGYYWMAMEHDCYQYARKCHKCQIYADKIHVPPHALNVMSSPWPFSMWG 1958
+G S + +++ +YW M D + R C CQ P L + P P +W
Sbjct: 1068 SGRDASHQRVKSLFYWKGMVKDIQAFIRSCGTCQQCKSDNAAYPGLLQPL--PIPDKIWC 1125
Query: 1959 IDMIGRIEPKASNGHR-FILVAIDYFTKWVEAASYTN-VTKQVVAKFIKNNIICRYGVPS 2016
+ IE ++G + I+V +D +K + + + VA+ +N+ +G P+
Sbjct: 1126 DVSMDFIEGLPNSGGKSVIMVVVDRLSKAAHFVALAHPYSALTVAQAFLDNVYKHHGCPT 1185
Query: 2017 KIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAANKNIKRIVQKMVTTYKD 2076
I++D ++ + + +E SS Y PQ +G E N+ ++ ++ M
Sbjct: 1186 SIVSDRDVLFTSDFWKEFFKLQGVELRMSSAYHPQSDGQTEVVNRCLENYLRCMCHARPH 1245
Query: 2077 -WHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQ 2135
W++ LP A + Y T SS+ TPF LVYG + L +V + A+ Q
Sbjct: 1246 LWNKWLPLAEYWYNTNYHSSSQMTPFELVYGQAPPIHLPYLPGKSKVAVVARS-----LQ 1300
Query: 2136 SRYDQLNLIEEKRMDAMARGHSYQARMKAAFDKKVNPREFKVGELVL-----KRRISQQP 2190
R + L ++ M A Q RMK D+ R F +G+ V R+ S
Sbjct: 1301 ERENMLLFLKFHLMRA-------QHRMKQFADQHRTERTFDIGDFVYVKLQPYRQQSVVL 1353
Query: 2191 DPRGKWTPNYEGPY-VVKKAFSGGALILTHMDGVELPNPVNADIVKK 2236
K +P Y GPY +++K G ++ +LP+ V DI +K
Sbjct: 1354 RVNQKLSPKYFGPYKIIEKC--GEVMVGNVTTSTQLPS-VLPDIFEK 1397
>At2g14040 putative retroelement pol polyprotein
Length = 841
Score = 236 bits (603), Expect = 9e-62
Identities = 153/497 (30%), Positives = 241/497 (47%), Gaps = 79/497 (15%)
Query: 1164 LREYPDIFAWSYEDMPGLDPMIVEHRIPTKPECPPVRQKLRRTHPDMALKIKSEVQKQID 1223
LR+Y +S +D+ G+ P + H I + E + RR + ++ +K E+ K +D
Sbjct: 340 LRKYRKALGYSLDDITGISPTLCMHMIHLEGESITSVEHQRRLNSNLRDVVKKEIMKLLD 399
Query: 1224 AGFLMTVEYPEWVANIVPVPKKDGKV------------------RMCVDFRDLNKASPKD 1265
AG + + WV+ + VPKK G + RMC+D+R LN A+ KD
Sbjct: 400 AGIIYPISDSTWVSPVHVVPKKGGVIVIKNEKNELIPTRTVTGHRMCIDYRKLNSATRKD 459
Query: 1266 NFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGL 1325
NFPL ID +++ + + F+DG+ G+ QI + P+D+EKT+F P+GTF Y+ MPFGL
Sbjct: 460 NFPLSFIDQMLERLSNQPYYCFLDGYLGFFQILIHPDDQEKTTFTCPYGTFAYRRMPFGL 519
Query: 1326 INAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSADEEQHVEYLTKMFERLRKYKLRLNP 1385
NA AT+Q M +F DMI +EV++DD +V E++H L LN
Sbjct: 520 CNAPATFQHCMKYIFSDMIEDFMEVFIDDFLVLQRCEDKH---------------LVLNW 564
Query: 1386 NKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISH 1445
K F VR G +LG +S+KG+EVD K+ +R FLG + RFI
Sbjct: 565 EKSHFMVRDGIVLGHKISEKGVEVDRAKIEIMR-------------FLGHAGFYRRFIKD 611
Query: 1446 MTATCGPIFKLLRKNQPIVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLIMYLAVFDES 1505
+ P +LL K Q ++D C +AF+ +K L+ I+ PP P + D
Sbjct: 612 FSKIARPCTQLLCKEQKSEFDDTCLQAFNIVKESLVSALIVQPPEWELPFEVICDASDYV 671
Query: 1506 MGCVLGQQDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWL 1565
+G VLGQ+ + KK HAIYY S+ + ++ HT
Sbjct: 672 VGAVLGQRKD--KKLHAIYYASRTLDGAQ-----------------------VIVHTVHA 706
Query: 1566 ISRMDPIKYIFEKAAVTGKIARWQMLLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQLI 1625
++Y+ K ++ RW +LL ++D+ K +K I+ + AD+L+ + + L+
Sbjct: 707 -----ALRYLLSKKDAKPRLLRWILLLQDFDLEIKDKKGIENEV-ADNLSRLRVQEEVLM 760
Query: 1626 EFDFPDEEIMYLKSKDC 1642
P E + + +DC
Sbjct: 761 RDILPGENLASI--EDC 775
>At2g06320 putative retroelement pol polyprotein
Length = 466
Score = 205 bits (522), Expect = 2e-52
Identities = 145/440 (32%), Positives = 218/440 (48%), Gaps = 16/440 (3%)
Query: 1805 VFAIGDVIDQAGENVVGYRPWYYDIKQFLLSREYPPGASKQDKKTLRRLAGRFLLDGDIL 1864
+F+IG Q V G PWY D +L PP + ++K R + D L
Sbjct: 20 LFSIGKEFHQLNA-VEGGSPWYADHVNYLACGIEPPNLTSYERKNFFRDIHHYYWDEPYL 78
Query: 1865 YKRNYDMVLLRCVDEHEAEQLVHDVHDGTFGTH-ATGHTMSRKLLRAGYYWMAMEHDCYQ 1923
Y D + V E E E ++ HD +G H AT T+S K+L+AG++W M D +
Sbjct: 79 YTLCKDKIYRSYVSEDEVEGILLHCHDSAYGGHFATFKTVS-KILQAGFWWPTMFKDAQE 137
Query: 1924 YARKCHKCQIYADKIHVPPHALNVMSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYF 1983
+ KC CQ + N + F +WGID +G +S G+++ILV +DY
Sbjct: 138 FVSKCDSCQRKGNISRRNEMPQNPILEVDIFDVWGIDFMGPFP--SSYGNKYILVVVDYV 195
Query: 1984 TKWVEA-ASYTNVTKQVVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEH 2042
+KWVEA AS TN K VV K K I R+GV +I+D G + N V + L ++ ++H
Sbjct: 196 SKWVEAIASPTNDAK-VVLKLFKTIIFPRFGVSWVVISDGGKHFINKVFENLLKKHGVKH 254
Query: 2043 HNSSPYRPQMNGAVEAANKNIKRIVQKMV-TTYKDWHEMLPYALHGYRTTVRSSTGATPF 2101
++PY PQ +G VE +N+ IK I++K V T KDW L AL Y+T ++ G TPF
Sbjct: 255 KVATPYHPQTSGQVEISNREIKTILEKTVGITRKDWSTKLDDALWAYKTAFKTPIGTTPF 314
Query: 2102 SLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGHSYQAR 2161
+L+ L +E+E ++ + + R QL+ ++E R++A Y+ R
Sbjct: 315 NLLCVKSCHLHVELEYKAMWAVKLLNFDIKTAEEKRLIQLSELDEIRLEAYESSKIYKER 374
Query: 2162 MKAAFDKKVNPREFKVGELVL--KRRISQQPDPRGKWTPNYEGPYVVKKAFSGGALILTH 2219
K DKK+ ++F+VG+ VL R+ P GK + GP+ + + GA+ L
Sbjct: 375 TKLFHDKKIITKDFQVGDQVLLFNSRLKIFP---GKLKSRWSGPFCITEVRPYGAVTLAG 431
Query: 2220 MDGVELPNPVNADIVKKYFA 2239
GV VN +KKY A
Sbjct: 432 KSGV---FTVNGQRLKKYLA 448
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.318 0.135 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,127,084
Number of Sequences: 26719
Number of extensions: 2403731
Number of successful extensions: 7889
Number of sequences better than 10.0: 230
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 112
Number of HSP's that attempted gapping in prelim test: 7148
Number of HSP's gapped (non-prelim): 579
length of query: 2239
length of database: 11,318,596
effective HSP length: 115
effective length of query: 2124
effective length of database: 8,245,911
effective search space: 17514314964
effective search space used: 17514314964
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 68 (30.8 bits)
Medicago: description of AC122728.10