BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC122726.12 + phase: 0
(280 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g19830 unknown protein 298 2e-81
At1g50260 hypothetical protein 283 7e-77
At4g00700 putative phosphoribosylanthranilate transferase 40 0.001
At3g61300 anthranilate phosphoribosyltransferase-like protein 40 0.001
At4g13550 putative protein 40 0.001
At5g11100 CLB1 - like protein 36 0.026
At4g05330 unknown protein 36 0.026
At5g47710 unknown protein 35 0.045
At5g04220 calcium lipid binding protein - like 35 0.045
At4g31610 reproductive meristem protein 1 (REM1) 35 0.045
At4g27310 putative protein 35 0.045
At1g05500 Ca2+-dependent lipid-binding protein, putative 35 0.059
At5g48060 phosphoribosylanthranilate transferase-like protein 34 0.100
At5g23570 unknown protein (At5g23570) 33 0.13
At1g72440 hypothetical protein 33 0.17
At3g07940 putative GTPase activating protein 33 0.22
At5g22650 putative histone deacetylase (HD2B) 32 0.29
At4g33630 unknown protein 32 0.38
At4g21160 unknown protein 32 0.38
At5g35910 nucleolar protein-like 31 0.65
>At3g19830 unknown protein
Length = 666
Score = 298 bits (764), Expect = 2e-81
Identities = 173/302 (57%), Positives = 209/302 (68%), Gaps = 34/302 (11%)
Query: 1 MQEGNMDSVGELSVTLVDARKLPYFF-GKTDPYVILSLGDQTIRSKKNSQTTVIG--WRP 57
MQEGN D VGELSVTLV+A+KLPY F GKTDPYVIL +GDQ IRSKKNSQTTVIG +P
Sbjct: 377 MQEGNKDFVGELSVTLVNAQKLPYMFSGKTDPYVILRIGDQVIRSKKNSQTTVIGAPGQP 436
Query: 58 -WNANLESAPQDFHMLVSNPKKQKLSIQVKDALGFADLTIGTGEVDLGSLQDTVPTDRIV 116
WN QDF LVSNP++Q L I+V D LGFAD+ IG GEVDL SL DTVPTDR V
Sbjct: 437 IWN-------QDFQFLVSNPREQVLQIEVNDCLGFADMAIGIGEVDLESLPDTVPTDRFV 489
Query: 117 ALQGGWGFLRKGLSGEILLRLTYKAYVEDEEDDKTEEDSIDIDVSDDELSDTEEANVTDK 176
+L+GGW KG +GEILLRLTYKAYVEDEEDDK +I D SDDE+SD+EE +
Sbjct: 490 SLRGGWSLFGKGSTGEILLRLTYKAYVEDEEDDKRNAKAIYADASDDEMSDSEEPS---- 545
Query: 177 TGVRESAYPTD---KESFMDVLAAIIVSEEFQGIVASETGFTKGLDNGSNTGSKASKSPV 233
+ V+ P+D +ESFM+VL+A+I+SEEFQGIV+SETG K +D+G ++ S
Sbjct: 546 SFVQNDKIPSDDIGQESFMNVLSALILSEEFQGIVSSETGNNK-VDDGESSVSPVPSMSG 604
Query: 234 ANAESIPPSADNSEGS---------------SGGSALFWLAVITSIAVLIAVNISGSSIF 278
A++ES P A N + S +GG AL W VITS+ VL+A+N+ GSS F
Sbjct: 605 ADSESRPKDAGNGDVSDLEVKNAKSDRGSINNGGLALLWFGVITSVLVLVAINMGGSSFF 664
Query: 279 NP 280
NP
Sbjct: 665 NP 666
>At1g50260 hypothetical protein
Length = 778
Score = 283 bits (724), Expect = 7e-77
Identities = 167/291 (57%), Positives = 201/291 (68%), Gaps = 24/291 (8%)
Query: 1 MQEGNMDSVGELSVTLVDARKLPY-FFGKTDPYVILSLGDQTIRSKKNSQTTVIG--WRP 57
MQEGN D VGELSVTLVDA+KL Y FFGKTDPY IL LGDQ IRSK+NSQTTVIG +P
Sbjct: 397 MQEGNKDFVGELSVTLVDAQKLRYMFFGKTDPYAILRLGDQVIRSKRNSQTTVIGAPGQP 456
Query: 58 -WNANLESAPQDFHMLVSNPKKQKLSIQVKDALGFADLTIGTGEVDLGSLQDTVPTDRIV 116
WN QDF LVSNP++Q L I+V D LGFAD+ IGTGEVDL LQDTVPTDRIV
Sbjct: 457 IWN-------QDFQFLVSNPREQVLQIEVNDRLGFADMAIGTGEVDLRFLQDTVPTDRIV 509
Query: 117 ALQGGWGFLRKGLSGEILLRLTYKAYVEDEEDDKTEEDSIDIDVSDDELSDTEEANVTDK 176
L+GGW KG +GEILLRLTYK+YVE+EEDDKT + ID SDDE+SD+EE +
Sbjct: 510 VLRGGWSLFGKGSAGEILLRLTYKSYVEEEEDDKTNVKA--IDTSDDEMSDSEELGSFVR 567
Query: 177 TGVRESAYPTDKESFMDVLAAIIVSEEFQGIVASET--GFTKGLDN-GSNTGSKASKS-- 231
G + S+ D+ESFM+VL+A+IVSEEFQGIV+SE G G D+ G+ SK S
Sbjct: 568 KG-KLSSDDIDQESFMNVLSALIVSEEFQGIVSSEARDGIIDGGDSLGAPVPSKPDTSKG 626
Query: 232 -----PVANAESIPPSADNSEGSSGGSALFWLAVITSIAVLIAVNISGSSI 277
V+N + + ++ G GG AL W +IT I VL+A+N+ GS +
Sbjct: 627 SERNADVSNLDLLVANSGRGAGGDGGLALLWFGIITGILVLVAINMEGSKL 677
>At4g00700 putative phosphoribosylanthranilate transferase
Length = 1006
Score = 40.4 bits (93), Expect = 0.001
Identities = 52/185 (28%), Positives = 75/185 (40%), Gaps = 31/185 (16%)
Query: 4 GNMDSVGELS---VTLVDARKLPY--FFGKTDPYVILSLGD---QTIRSKKNSQTTVIGW 55
G D V E+ V +V AR LP G DPYV++ +G+ T KN+
Sbjct: 259 GTYDLVEEMKFLYVRVVKARDLPNKDLTGSLDPYVVVKIGNFKGVTTHFNKNTDPE---- 314
Query: 56 RPWNANLESAPQDFHMLVSNPKKQKLSIQVKDALGFADLTIGTGEVDLGSLQDTVPTDRI 115
WN Q F N + L + VKD D +G + DL +Q VP D
Sbjct: 315 --WN-------QVFAFAKDNLQSNFLEVMVKDKDILLDDFVGIVKFDLREVQSRVPPDSP 365
Query: 116 VALQGGWGFLR----KGLSGEILLRLTYKAYVEDEEDDKTEEDSIDIDVSDDELSDTEEA 171
+A Q W L + + EI+L + ++ D T DS+ D + S+ A
Sbjct: 366 LAPQ--WYRLENKRGEKKNYEIMLAVWSGTQADEAFGDATFSDSL----VDSDSSNIISA 419
Query: 172 NVTDK 176
N+ K
Sbjct: 420 NLRSK 424
>At3g61300 anthranilate phosphoribosyltransferase-like protein
Length = 972
Score = 40.4 bits (93), Expect = 0.001
Identities = 39/150 (26%), Positives = 64/150 (42%), Gaps = 18/150 (12%)
Query: 12 LSVTLVDARKLPYF--FGKTDPYVILSLGDQTIRSK--KNSQTTVIGWRPWNANLESAPQ 67
L + +V AR LP G DPY+ + LG+ T ++K + +Q V WN +
Sbjct: 251 LFIKIVKARNLPSMDLTGSLDPYIEVKLGNYTGKTKHFEKNQNPV-----WN-------E 298
Query: 68 DFHMLVSNPKKQKLSIQVKDALGFADLTIGTGEVDLGSLQDTVPTDRIVALQGGWGFLRK 127
F SN + L + V D D +G DL + V D +A + W +
Sbjct: 299 VFAFSKSNQQSNVLEVIVMDKDMVKDDFVGLIRFDLNQIPTRVAPDSPLAPE--WYRVNN 356
Query: 128 GLSGEILLRLTYKAYVEDEEDDKTEEDSID 157
GEI+L + + ++ D T D+++
Sbjct: 357 EKGGEIMLAVWFGTQADEAFSDATYSDALN 386
>At4g13550 putative protein
Length = 805
Score = 40.0 bits (92), Expect = 0.001
Identities = 57/235 (24%), Positives = 91/235 (38%), Gaps = 48/235 (20%)
Query: 27 GKTDPYVILSLGDQTIRSKKNSQTTVIGWRPWNANLESAPQDFHMLVSNPKKQKLSIQVK 86
G +DPYV++ L Q +SK T W +DF + P +K+ I
Sbjct: 90 GTSDPYVVMDLDGQVAKSKTKWGTKEPKWN----------EDFVFNIKLPPAKKIEIAAW 139
Query: 87 DA-LGFADLTIGTGEVDLGSLQDTVPTDRIVALQGGWGFLRK--------GLSGEILLRL 137
DA L +G E++L S+ D ++ G L K G G++ L +
Sbjct: 140 DANLVTPHKRMGNSEINLESV-----CDAVLFCFASEGNLHKVLVELDGIGGGGKVQLEI 194
Query: 138 TYKAYVEDEEDDKTEEDSIDIDVSDDELSDTEEANVTDKTGVRESAYPTDKESFMDVLAA 197
YK + E EE+ K + L E +V D E+ VL
Sbjct: 195 KYKGFGEVEEEKKWWR----FPFVSEFLQRNEIKSVLKNF--------VDSEAVESVLKN 242
Query: 198 IIVSEEF--QGIVASETGFTKGLDNGSNTGSKASKSPVANAESIPPSADNSEGSS 250
++ SE + V G K L++ +P+ N E + +A++SEG+S
Sbjct: 243 LVDSEAVPARQFVEYAFGQLKSLND----------APLKNTELLNNTAEDSEGAS 287
>At5g11100 CLB1 - like protein
Length = 574
Score = 35.8 bits (81), Expect = 0.026
Identities = 32/102 (31%), Positives = 49/102 (47%), Gaps = 12/102 (11%)
Query: 9 VGELSVTLVDARKLPY--FFGKTDPYVILSLGDQTIRSKKNSQTTVIGWRP-WNANLESA 65
VG+L V +V A+ L GK+DPY I+ + R+KK ++T P WN
Sbjct: 270 VGKLDVKVVQAKDLANKDMIGKSDPYAIVFIRPLPDRTKK-TKTISNSLNPIWN------ 322
Query: 66 PQDFHMLVSNPKKQKLSIQVKDALGF-ADLTIGTGEVDLGSL 106
+ F +V + Q L+++V D G + IG +V L L
Sbjct: 323 -EHFEFIVEDVSTQHLTVRVFDDEGVGSSQLIGAAQVPLNEL 363
Score = 32.7 bits (73), Expect = 0.22
Identities = 31/93 (33%), Positives = 45/93 (48%), Gaps = 16/93 (17%)
Query: 10 GELSVTLVDARKLPY--FFGKTDPYVILSLGDQTIRSKKNSQTTVI--GWRP-WNANLES 64
G LSVT+V A LP F GK D +V+++L +S+ S+T V+ P WN
Sbjct: 448 GVLSVTVVAAEDLPAVDFMGKADAFVVITLK----KSETKSKTRVVPDSLNPVWN----- 498
Query: 65 APQDFHMLVSNPKKQKLSIQVKDALGFADLTIG 97
Q F +V + L+++V D F IG
Sbjct: 499 --QTFDFVVEDALHDLLTLEVWDHDKFGKDKIG 529
>At4g05330 unknown protein
Length = 336
Score = 35.8 bits (81), Expect = 0.026
Identities = 34/107 (31%), Positives = 50/107 (45%), Gaps = 13/107 (12%)
Query: 2 QEGNMDSVGELSVTLVDARKLPYF-FGKTDPYVILSLGDQTIRSKKNSQTTVIGWRPWNA 60
QEG ++ +G L VT+ L +DPYV+L+LG Q + QTTV+ N+
Sbjct: 172 QEGMVEFIGLLKVTIKKGTNLAIRDMMSSDPYVVLNLGKQKL------QTTVM-----NS 220
Query: 61 NLESAPQDFHMLVSNPKKQKLSIQVKDALGF-ADLTIGTGEVDLGSL 106
NL ML + +QV D F AD +G ++D+ L
Sbjct: 221 NLNPVWNQELMLSVPESYGPVKLQVYDYDTFSADDIMGEADIDIQPL 267
>At5g47710 unknown protein
Length = 166
Score = 35.0 bits (79), Expect = 0.045
Identities = 26/93 (27%), Positives = 46/93 (48%), Gaps = 8/93 (8%)
Query: 7 DSVGELSVTLVDARKLPYF-FGKTDPYVILSLGDQTIRSK--KNSQTTVIGWRPWNANLE 63
+ +G L VT++ +KL F +DPYVI+ LG+++ ++K N V WN L
Sbjct: 3 EPLGLLQVTVIQGKKLVIRDFKSSDPYVIVKLGNESAKTKVINNCLNPV-----WNEELN 57
Query: 64 SAPQDFHMLVSNPKKQKLSIQVKDALGFADLTI 96
+D +++ K + D +G A L++
Sbjct: 58 FTLKDPAAVLALEVFDKDRFKADDKMGHASLSL 90
>At5g04220 calcium lipid binding protein - like
Length = 540
Score = 35.0 bits (79), Expect = 0.045
Identities = 29/81 (35%), Positives = 44/81 (53%), Gaps = 9/81 (11%)
Query: 9 VGELSVTLVDARKL--PYFFGKTDPYVILSLGDQTIRSKKNSQTTVIGWRPWNANLESAP 66
VG L V+++ AR L G +DPYV LSL + + +KK TT+ + N N E
Sbjct: 260 VGLLHVSILRARNLLKKDLLGTSDPYVKLSLTGEKLPAKK---TTI---KKRNLNPE-WN 312
Query: 67 QDFHMLVSNPKKQKLSIQVKD 87
+ F ++V +P Q L ++V D
Sbjct: 313 EHFKLIVKDPNSQVLQLEVFD 333
>At4g31610 reproductive meristem protein 1 (REM1)
Length = 517
Score = 35.0 bits (79), Expect = 0.045
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 123 GFLRKGLSGEILLRLTYKAYVEDEEDDKTEEDSIDIDVSDDELSDTEEANVTDKTGVRES 182
G +R S +++ TY V+D +DD +D D D DDE D E N+++KT R+
Sbjct: 95 GDIRNASSSQVITEDTY-IDVDDVDDDDYGQDDEDDDDDDDEGEDNIE-NISEKTDKRQE 152
Query: 183 A 183
A
Sbjct: 153 A 153
>At4g27310 putative protein
Length = 223
Score = 35.0 bits (79), Expect = 0.045
Identities = 17/32 (53%), Positives = 22/32 (68%)
Query: 140 KAYVEDEEDDKTEEDSIDIDVSDDELSDTEEA 171
++Y +DEE+D+ EE S D D DDE D EEA
Sbjct: 118 ESYDDDEEEDEDEEYSDDEDEDDDEDGDDEEA 149
>At1g05500 Ca2+-dependent lipid-binding protein, putative
Length = 560
Score = 34.7 bits (78), Expect = 0.059
Identities = 17/38 (44%), Positives = 24/38 (62%), Gaps = 2/38 (5%)
Query: 10 GELSVTLVDARKLPY--FFGKTDPYVILSLGDQTIRSK 45
G LSVT++ A ++P GK DPYV+LS+ +SK
Sbjct: 435 GVLSVTVISAEEIPIQDLMGKADPYVVLSMKKSGAKSK 472
>At5g48060 phosphoribosylanthranilate transferase-like protein
Length = 1036
Score = 33.9 bits (76), Expect = 0.100
Identities = 43/155 (27%), Positives = 64/155 (40%), Gaps = 18/155 (11%)
Query: 12 LSVTLVDARKLP--YFFGKTDPYVILSLGDQTIRSKKNSQTTVIGWRPWNANLESAPQDF 69
L V +V A++LP G DPYV + LG+ R+K + T I WN Q F
Sbjct: 296 LYVRVVKAKELPPGSITGGCDPYVEVKLGNYKGRTKIFDRKTTI--PEWN-------QVF 346
Query: 70 HMLVSNPKKQKLSIQVKD--ALGFADLTIGTGEVDLGSLQDTVPTDRIVALQ----GGWG 123
+ L + VKD LG D+ +G DL + VP + +A Q W
Sbjct: 347 AFTKERIQSSVLEVFVKDKETLGRDDI-LGKVVFDLNEIPTRVPPNSPLAPQWYRLEDWR 405
Query: 124 FLRKGLSGEILLRLTYKAYVEDEEDDKTEEDSIDI 158
K + GEI+L + ++ + DS +
Sbjct: 406 GEGKVVRGEIMLAVWMGTQADEAFPEAWHADSASV 440
>At5g23570 unknown protein (At5g23570)
Length = 625
Score = 33.5 bits (75), Expect = 0.13
Identities = 23/63 (36%), Positives = 38/63 (59%), Gaps = 4/63 (6%)
Query: 118 LQGGWGFLRKGLSGEILLRLTYKAYVEDEEDDKTEE--DSIDIDVSDDEL-SDTEEANVT 174
L+GGW + +G S + + VED+ D+ +EE DS +D SDD+L SD +++V+
Sbjct: 133 LEGGWNWQARGGSAQHTAVQEFPD-VEDDVDNASEEENDSDALDDSDDDLASDDYDSDVS 191
Query: 175 DKT 177
K+
Sbjct: 192 QKS 194
>At1g72440 hypothetical protein
Length = 1056
Score = 33.1 bits (74), Expect = 0.17
Identities = 43/155 (27%), Positives = 71/155 (45%), Gaps = 21/155 (13%)
Query: 143 VEDEEDDKTEEDSIDIDVSDDELSDTEEANV--TDKTGVRESAYPTDKESFMDVLAAIIV 200
VE+EED + ED I+ D D + NV D GV +S+ D S + AI +
Sbjct: 640 VEEEEDIEHFEDVIEGDDVDPNKKAENDENVVEVDHDGVEKSSRDGDSSSDDEEALAIRL 699
Query: 201 SEE--------FQGIVASETGFTKGLDNGSNTGSKASKSPVANAESIPPSAD--NSEGS- 249
S+E + ++ +ET + + SN K S+ P+ S+P D + E S
Sbjct: 700 SDEEDDNASDDSEELIRNETPQLEEVMEVSNDMEKRSQPPM-RPSSLPGGYDPRHREPSY 758
Query: 250 -SGGSALFW-LAVIT-----SIAVLIAVNISGSSI 277
+ A +W L V++ S+A + +SG++I
Sbjct: 759 CNADRASWWELGVLSKHAHPSVATMAGTLLSGTNI 793
>At3g07940 putative GTPase activating protein
Length = 385
Score = 32.7 bits (73), Expect = 0.22
Identities = 33/107 (30%), Positives = 50/107 (45%), Gaps = 17/107 (15%)
Query: 4 GNMDSVGELSVTLVDARKLPYFFGKT-DPYVILSLGDQTIRSK--KNSQTTVIGWRPWNA 60
G ++ VG + V +V L T DPYVIL+LG Q+++++ KN+ V WN
Sbjct: 223 GMVEFVGLIKVNVVKGTNLAVRDVMTSDPYVILALGQQSVKTRVIKNNLNPV-----WNE 277
Query: 61 NLE-SAPQDFHMLVSNPKKQKLSIQVKDALGFADLTIGTGEVDLGSL 106
L S P+ L K+ + KD D +G E+D+ L
Sbjct: 278 TLMLSIPEPMPPL-------KVLVYDKDTFSTDDF-MGEAEIDIQPL 316
>At5g22650 putative histone deacetylase (HD2B)
Length = 306
Score = 32.3 bits (72), Expect = 0.29
Identities = 24/111 (21%), Positives = 48/111 (42%), Gaps = 1/111 (0%)
Query: 144 EDEEDDKTEEDSIDIDVSDDELSDTEEANVTDKTGVRESAYPTDKESFMDVLAAIIVSEE 203
E EEDD +E+ +D+D D + + E++ ++ + P +K+ + ++ VS +
Sbjct: 165 ESEEDDDSEK-GMDVDEDDSDDDEEEDSEDEEEEETPKKPEPINKKRPNESVSKTPVSGK 223
Query: 204 FQGIVASETGFTKGLDNGSNTGSKASKSPVANAESIPPSADNSEGSSGGSA 254
A+ + + G A+ P P +A+ S S G S+
Sbjct: 224 KAKPAAAPASTPQKTEEKKKGGHTATPHPAKKGGKSPVNANQSPKSGGQSS 274
>At4g33630 unknown protein
Length = 684
Score = 32.0 bits (71), Expect = 0.38
Identities = 18/52 (34%), Positives = 26/52 (49%), Gaps = 11/52 (21%)
Query: 143 VEDEEDDKTEEDSIDIDVSDDELSDTEEAN-----------VTDKTGVRESA 183
+ DEED++ + D DIDV DD ++ +E N + D G RE A
Sbjct: 359 IADEEDEENDLDIEDIDVEDDTKAEIDEKNADIELESVTDEIIDNNGGREIA 410
>At4g21160 unknown protein
Length = 337
Score = 32.0 bits (71), Expect = 0.38
Identities = 31/106 (29%), Positives = 49/106 (45%), Gaps = 13/106 (12%)
Query: 3 EGNMDSVGELSVTLVDARKLPYF-FGKTDPYVILSLGDQTIRSKKNSQTTVIGWRPWNAN 61
EG ++ +G L VT+ + +DPYV+L+LG Q +Q+TV+ +N
Sbjct: 174 EGMVEFIGLLKVTIKKGTNMAIRDMMSSDPYVVLTLGQQ------KAQSTVV-----KSN 222
Query: 62 LESAPQDFHMLVSNPKKQKLSIQVKDALGF-ADLTIGTGEVDLGSL 106
L + ML + +QV D F AD +G E+D+ L
Sbjct: 223 LNPVWNEELMLSVPHNYGSVKLQVFDYDTFSADDIMGEAEIDIQPL 268
>At5g35910 nucleolar protein-like
Length = 834
Score = 31.2 bits (69), Expect = 0.65
Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 6/105 (5%)
Query: 135 LRLTYKAYVEDEEDDK-TEEDSIDIDVSDDELSDTEEANVTDKTGVRESAYPTDKESFMD 193
+ L++ ++ E D K T E S + +E+S T A+V+ + GV+E D E +
Sbjct: 644 VNLSFHSFTEKVPDSKSTSETSPKVYGKPEEMSSTMPASVSKEDGVKE--LKDDSEEASE 701
Query: 194 VLAAI-IVSEEFQGIVASETGFTKGLDNGSNTGSKASKSPVANAE 237
++ VSE + +SE G L+NG A P++ +E
Sbjct: 702 IVGTSGRVSE--SKVSSSEMGDIILLENGDEKKVDAEDEPMSLSE 744
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.310 0.131 0.363
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,265,194
Number of Sequences: 26719
Number of extensions: 277316
Number of successful extensions: 2079
Number of sequences better than 10.0: 115
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 66
Number of HSP's that attempted gapping in prelim test: 1704
Number of HSP's gapped (non-prelim): 280
length of query: 280
length of database: 11,318,596
effective HSP length: 98
effective length of query: 182
effective length of database: 8,700,134
effective search space: 1583424388
effective search space used: 1583424388
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 59 (27.3 bits)
Medicago: description of AC122726.12