BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC122166.6 - phase: 0 /pseudo
(1091 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g45230 putative non-LTR retroelement reverse transcriptase 431 e-120
At3g32110 non-LTR reverse transcriptase, putative 411 e-114
At2g17910 putative non-LTR retroelement reverse transcriptase 402 e-112
At1g47910 reverse transcriptase, putative 382 e-106
At1g24640 hypothetical protein 377 e-104
At2g31080 putative non-LTR retroelement reverse transcriptase 377 e-104
At2g25550 putative non-LTR retroelement reverse transcriptase 376 e-104
At2g31520 putative non-LTR retroelement reverse transcriptase 375 e-104
At1g25430 hypothetical protein 373 e-103
At2g05200 putative non-LTR retroelement reverse transcriptase 370 e-102
At4g09710 RNA-directed DNA polymerase -like protein 369 e-102
At4g10830 putative protein 362 e-100
At2g01840 putative non-LTR retroelement reverse transcriptase 359 4e-99
At2g41580 putative non-LTR retroelement reverse transcriptase 343 2e-94
At3g45550 putative protein 334 2e-91
At4g15590 reverse transcriptase like protein 331 1e-90
At1g31100 hypothetical protein 330 4e-90
At2g23880 putative non-LTR retroelement reverse transcriptase 320 3e-87
At2g11240 pseudogene 318 1e-86
At2g28980 putative non-LTR retroelement reverse transcriptase 317 2e-86
>At2g45230 putative non-LTR retroelement reverse transcriptase
Length = 1374
Score = 431 bits (1108), Expect = e-120
Identities = 319/1098 (29%), Positives = 506/1098 (46%), Gaps = 76/1098 (6%)
Query: 1 VGASRGMVTIW-DRVEVEVWSTVRGVHFLLIHGRFLKSNEEFYIFNMYAPCDRRAKQVLW 59
+G S G+ +W D V+++V + + LI + ++EFY+ +Y + + LW
Sbjct: 62 IGKSGGLALMWKDSVQIKVLQSDKR----LIDALLIWQDKEFYLTCIYGEPVQAERGELW 117
Query: 60 NSLSSRLLSLGSSKVCVCGDFNTVRSVDERRSVRG-SQVVDDCAPFNDFIEDRVLINLPL 118
L+ LS S + GDFN + VD + G ++ C F + L +
Sbjct: 118 ERLTRLGLSR-SGPWMLTGDFNEL--VDPSEKIGGPARKESSCLEFRQMLNSCGLWEVNH 174
Query: 119 CGRKFTWYNG--DGRSMSTLDRFLLSEEWCMVWPTCLQVAQLRGLSDHCPIVLTVDEKNW 176
G +F+WY D LDR + ++ W ++P + SDH P++ + NW
Sbjct: 175 SGYQFSWYGNRNDELVQCRLDRTVANQAWMELFPQAKATYLQKICSDHSPLINNLVGDNW 234
Query: 177 GP-RPVRLLKCWQDMPGYSDFVREKWGSFQVSGWGGFVLKEKLKLMKAALKEWHVANTLN 235
+ K W G+ D + W Q S ++ EK+ + + +W ++
Sbjct: 235 RKWAGFKYDKRWVQREGFKDLLCNFWS--QQSTKTNALMMEKIASCRREISKW---KRVS 289
Query: 236 LPSKIVSLKNRRAVLDSKGEEEELSEEELGELHGISSDIHSLSRLNTSICWQQ-SRLNWL 294
PS V ++ + LD+ ++ EL L S ++ N WQ+ SR+ W+
Sbjct: 290 KPSSAVRIQELQFKLDAATKQIPFDRRELARLKKELSQEYN----NEEQFWQEKSRIMWM 345
Query: 295 RDGDANSKFFHSVLAARRRINSLSSILVDGVVVEGVQPVRQAVFTHSKNHFLAPIMTRPS 354
R+GD N+K+FH+ RR N + ++ + EG + + +
Sbjct: 346 RNGDRNTKYFHAATKNRRAQNRIQKLIDE----EGREWTSDEDLGRVAEAYFKKLFASED 401
Query: 355 VGHL--QFRKL----SSVERGGLIKPFHEEEIKAAVWDCDSYKIPGPDGINLGFIKSFWH 408
VG+ + L S L+ P +EE++ A + + +K PGPDG+N + FW
Sbjct: 402 VGYTVEELENLTPLVSDQMNNNLLAPITKEEVQRATFSINPHKCPGPDGMNGFLYQQFWE 461
Query: 409 EMKAEIVRFVTEFHRNRKLSKGINSRFIALIPKVASPQSLNEFRPISLVGSLYKILAKIL 468
M +I V F R+ + +G+N I LIPK+ + + +FRPISL +YK++ K++
Sbjct: 462 TMGDQITEMVQAFFRSGSIEEGMNKTNICLIPKILKAEKMTDFRPISLCNVIYKVIGKLM 521
Query: 469 ANRLRQVIGSVVSEVQSAFVKNRQILDGILITNEV---VDEARKSKKDLLLFKVDFEKAY 525
ANRL++++ S++SE Q+AFVK R I D ILI +E+ + K ++ + K D KAY
Sbjct: 522 ANRLKKILPSLISETQAAFVKGRLISDNILIAHELLHALSSNNKCSEEFIAIKTDISKAY 581
Query: 526 DSVDWGYLDEVMGSMTFPTVW*KWIKECVGTATASVLVNGCPTDEFFLERGLRQGDPLSP 585
D V+W +L++ M + F W + I ECV + VL+NG P E RGLRQGDPLSP
Sbjct: 582 DRVEWPFLEKAMRGLGFADHWIRLIMECVKSVRYQVLINGTPHGEIIPSRGLRQGDPLSP 641
Query: 586 FLFLLAAEGLNVLMKALVDAGLFKGYSVGRADPVVVSHLQFADDTLLIGNKSWANVRALR 645
+LF++ E L ++++ G V R P +SHL FADD++ N AL
Sbjct: 642 YLFVICTEMLVKMLQSAEQKNQITGLKVARGAP-PISHLLFADDSMFYCK---VNDEALG 697
Query: 646 AGLILLE---AMSGLKVNFHKSSL-VGVNITGSWLSEAASVLGCKVGKIPFLYLGLSIGG 701
+ ++E SG +VN+ KSS+ G +I+ LG + +YLGL
Sbjct: 698 QIIRIIEEYSLASGQRVNYLKSSIYFGKHISEERRCLVKRKLGIEREGGEGVYLGLPESF 757
Query: 702 DPRRLLFWEPVVNRIKNRLSGWQSRFLSFGGRLVLLKFVLTALPVYALSFFKAPSGIISS 761
++ + +R+ ++ GWQS FLS GG+ +LLK V ALP Y +S FK P I
Sbjct: 758 QGSKVATLSYLKDRLGKKVLGWQSNFLSPGGKEILLKAVAMALPTYTMSCFKIPKTICQQ 817
Query: 762 IESLFNKFFWGGGEDKRKISWIRWDTLSLRKEYGGLGVTRLREFNLALLGKWCWRLLLEK 821
IES+ +F+W ++ R + W W LS K GGLG + FN+ALLGK WR++ EK
Sbjct: 818 IESVMAEFWWKNKKEGRGLHWKAWCHLSRPKAVGGLGFKEIEAFNIALLGKQLWRMITEK 877
Query: 822 EALWRKVLVARYGVADGGLEDG-GRSCSSWWREIVRIRDGIGEGGEGWFGSCVRRRVGDG 880
++L KV +RY L G S W+ I + I +G +R +G+G
Sbjct: 878 DSLMAKVFKSRYFSKSDPLNAPLGSRPSFAWKSIYEAQVLIKQG--------IRAVIGNG 929
Query: 881 AETDFWWDCWCG-----DVSLCERFSRLYDLTVNKLISVRNMILLGVDVGGEALRWRRRL 935
+ W D W G +R + N + V++++L G W
Sbjct: 930 ETINVWTDPWIGAKPAKAAQAVKRSHLVSQYAANSIHVVKDLLL----PDGRDWNWNLVS 985
Query: 936 WAWEEELVEEFXALLLTVSLQESVTDRWIWLPTQDDGYSVRGAYDMLTS--------QE- 986
+ + E AL + DR+ W ++ YSV+ Y ++T QE
Sbjct: 986 LLFPDNTQENILALR---PGGKETRDRFTWEYSRSGHYSVKSGYWVMTEIINQRNNPQEV 1042
Query: 987 -QPHLHQNLELIWHTQVPLKVSILAWRLLRDRLPTKDNLANRGILPLEARMCVSSCGNEE 1045
QP L + IW VP K+ WR + + L NLA R + + CV + E
Sbjct: 1043 LQPSLDPIFQQIWKLDVPPKIHHFLWRCVNNCLSVASNLAYRHL--AREKSCVRCPSHGE 1100
Query: 1046 DVNHLFLSCATFSALWPL 1063
VNHL C W +
Sbjct: 1101 TVNHLLFKCPFARLTWAI 1118
>At3g32110 non-LTR reverse transcriptase, putative
Length = 1911
Score = 411 bits (1056), Expect = e-114
Identities = 311/1085 (28%), Positives = 484/1085 (43%), Gaps = 91/1085 (8%)
Query: 1 VGASRGMVTIWDRVEVEVWSTVRGVHFLLIHGRFLKSNEEFYIFNMYAPCDRRAKQVLWN 60
VG S G+ +W R + S V IH + + + + +YA + LW+
Sbjct: 627 VGHSGGLWLLW-RTGIGEVSVVDSTD-QFIHAKDVNGKDNVNLVVVYAAPTASRRSGLWD 684
Query: 61 SLSSRLLSLGSSKVCVCGDFNTVRSVDERRSVRGSQVVDDCAPFNDFIEDRVLINLPLCG 120
L + S+ V + GDFNT+ +DER G ++ D F ++I D LI+L G
Sbjct: 685 RLGDVIRSM-DGPVVIGGDFNTIVRLDERSGGNG-RLSSDSLAFGEWINDHSLIDLGFKG 742
Query: 121 RKFTWYNGDGRSM---STLDRFLLSEEWCMVWPTCLQVAQLRGLSDHCPIVLTVDEK--- 174
KFTW G LDR L + W + SDH P+ + + +
Sbjct: 743 NKFTWKRGREERFFVAKRLDRVLCCAHARLKWQEASVLHLPFLASDHAPLYVQLTPEVSG 802
Query: 175 NWGPRPVRLLKCWQDMPGYSDFVREKWGSFQVSGWGGFVLKEKLKLMKAALKEWHVANTL 234
N G RP R W PG+ + + W E LK+ + L + H ++ L
Sbjct: 803 NRGRRPFRFEAAWLSHPGFKELLLTSWNK-------DISTPEALKVQE--LLDLHQSDDL 853
Query: 235 NLPSKIVSLKNRRAVLDSKGEEEELSEEELGELHGISSDIHSLSRLNTSICWQQSRLNWL 294
LK +L K + L +EE+ + Q+SR W
Sbjct: 854 --------LKKEEELL--KDFDVVLEQEEV-------------------VWMQKSREKWF 884
Query: 295 RDGDANSKFFHSVLAARRRINSLSSIL-VDGVVVEGVQPVRQAVFTHSKNHFL-----AP 348
GD N+KFFH+ RRR N + + DG + Q + + K + A
Sbjct: 885 VHGDRNTKFFHTSTIIRRRRNQIEMLQDNDGRWLSNAQELETHAIDYYKRLYSLDDLDAV 944
Query: 349 IMTRPSVGHLQFRKLSSVERGGLIKPFHEEEIKAAVWDCDSYKIPGPDGINLGFIKSFWH 408
+ P G F LS + L KPF E++ A+ YK PGPDG F + W
Sbjct: 945 VEQLPQEG---FTALSEADFSSLTKPFSPLEVEGAIRSMGKYKAPGPDGFQPVFYQQGWE 1001
Query: 409 EMKAEIVRFVTEFHRNRKLSKGINSRFIALIPKVASPQSLNEFRPISLVGSLYKILAKIL 468
+ + +FV +F + + N + LI KV P+ + +FRPISL L+K + K++
Sbjct: 1002 VVGESVTKFVMDFFSSGSFPQETNDVLVVLIAKVLKPEKITQFRPISLCNVLFKTITKVM 1061
Query: 469 ANRLRQVIGSVVSEVQSAFVKNRQILDGILITNEVVDEARKSK--KDLLLFKVDFEKAYD 526
RL+ VI ++ Q++F+ R D I++ EVV R+ K K +L K+D EKAYD
Sbjct: 1062 VGRLKGVINKLIGPAQTSFIPGRLSTDNIVVVQEVVHSMRRKKGVKGWMLLKLDLEKAYD 1121
Query: 527 SVDWGYLDEVMGSMTFPTVW*KWIKECVGTATASVLVNGCPTDEFFLERGLRQGDPLSPF 586
+ W L++ + + P W +WI +CV + +L NG TD F RGLRQGDPLSP+
Sbjct: 1122 RIRWDLLEDTLKAAGLPGTWVQWIMKCVEGPSMRLLWNGEKTDAFKPLRGLRQGDPLSPY 1181
Query: 587 LFLLAAEGLNVLMKALVDAGLFKGYSVGRADPVVVSHLQFADDTLLIGNKSWANVRALRA 646
LF+L E L L+++ + A +K + ++ P +SH+ FADD +L S +R LR
Sbjct: 1182 LFVLCIERLCHLIESSIAAKKWKPIKISQSGP-RLSHICFADDLILFAEASIDQIRVLRG 1240
Query: 647 GLILLEAMSGLKVNFHKSSL-VGVNITGSWLSEAASVLGCKVGKIPFLYLGLSIGGDPRR 705
L SG KV+ KS + N+ + G K K YLG+ I
Sbjct: 1241 VLEKFCGASGQKVSLEKSKIYFSKNVLRDLGKRISEESGMKATKDLGKYLGVPILQKRIN 1300
Query: 706 LLFWEPVVNRIKNRLSGWQSRFLSFGGRLVLLKFVLTALPVYALSFFKAPSGIISSIESL 765
+ V+ R +RL+GW+ R LSF GRL L K VLT++ V+ +S K P + ++ +
Sbjct: 1301 KETFGEVIKRFSSRLAGWKGRMLSFAGRLTLTKAVLTSILVHTMSTIKLPQSTLDGLDKV 1360
Query: 766 FNKFFWGGGEDKRKISWIRWDTLSLRKEYGGLGVTRLREFNLALLGKWCWRLLLEKEALW 825
F WG +K+K + W + L + GGLG+ N AL+ K WR+L + +LW
Sbjct: 1361 SRAFLWGSTLEKKKQHLVAWTRVCLPRREGGLGIRSATAMNKALIAKVGWRVLNDGSSLW 1420
Query: 826 RKVLVARYGVADGGLEDGGRSCSSW---WREI-VRIRDGIGEGGEGWFGSCVRRRVGDGA 881
+V+ ++Y V D + + S+W WR + V +RD I + W +GDG
Sbjct: 1421 AQVVRSKYKVGDVHDRNWTVAKSNWSSTWRSVGVGLRDVIWR-EQHWV-------IGDGR 1472
Query: 882 ETDFWWDCWCGDVSLCERFSRLYDLTVNKLISVRNMILLGVDVGGEALRWRRRLWAWEEE 941
+ FW D W + + + D V +S+ M+ D+ + W A
Sbjct: 1473 QIRFWTDRWLSETPIAD------DSIVP--LSLAQMLCTARDLWRDGTGWDMSQIA---P 1521
Query: 942 LVEEFXALLLTVSLQESVT---DRWIWLPTQDDGYSVRGAYDMLTSQEQPH--LHQNLEL 996
V + L L + +SVT DR W T D ++V+ A+ MLT+ + P +
Sbjct: 1522 FVTDNKRLDLLAVIVDSVTGAHDRLAWGMTSDGRFTVKSAFAMLTNDDSPRQDMSSLYGR 1581
Query: 997 IWHTQVPLKVSILAWRLLRDRLPTKDNLANRGILPLEARMCVSSCGNEEDVNHLFLSCAT 1056
+W Q P +V + W ++ + T R + ++ +C G E + H+ C
Sbjct: 1582 VWKVQAPERVRVFLWLVVNQAIMTNSERKRRHL--CDSDVCQVCRGGIESILHVLRDCPA 1639
Query: 1057 FSALW 1061
S +W
Sbjct: 1640 MSGIW 1644
>At2g17910 putative non-LTR retroelement reverse transcriptase
Length = 1344
Score = 402 bits (1033), Expect = e-112
Identities = 326/1096 (29%), Positives = 504/1096 (45%), Gaps = 82/1096 (7%)
Query: 2 GASRGMVTIW-DRVEVEVWSTVRGVHFLLIHGRFLKSNEEFYIFNMYAPCDRRAKQVLWN 60
G S G+ W +E+E + + L + R N+ ++I +Y + LW
Sbjct: 41 GRSGGLAIFWKSHLEIEFLYADKNLMDLQVSSR----NKVWFISCVYGLPVTHMRPKLWE 96
Query: 61 SLSSRLLSLGSSKVCVCGDFNTVRSVDERRS-VRGSQVVDDCAPFNDFIEDRVLINLPLC 119
L+S L + C+ GDFN +RS DE+ R S C F + + + L
Sbjct: 97 HLNSIGLKRAEAW-CLIGDFNDIRSNDEKLGGPRRSPSSFQC--FEHMLLNCSMHELGST 153
Query: 120 GRKFTW--YNGDGRSMSTLDRFLLSEEWCMVWPTCLQVAQLRGLSDHCPIVLTVDEKNWG 177
G FTW D LDR + W ++P Q + SDH P+++ N
Sbjct: 154 GNSFTWGGNRNDQWVQCKLDRCFGNPAWFSIFPNAHQWFLEKFGSDHRPVLVKFTNDNEL 213
Query: 178 PR-PVRLLKCWQDMPGYSDFVREKWGSFQVSGWGGFVLKEKLKLMKAALKEWHVANTLNL 236
R R K D P + + W S G L + A+ W ++ N
Sbjct: 214 FRGQFRYDKRLDDDPYCIEVIHRSWNSAMSQGTHSSFFS--LIECRRAISVWKHSSDTNA 271
Query: 237 PSKIVSLKNRRAVLDSKGEEEELSEEELGELHGISSDIHSLSRLNTSICWQQ-SRLNWLR 295
S+I K R LD+ E+ + + I + SL+ + + W+Q SR WL
Sbjct: 272 QSRI---KRLRKDLDA---EKSIQIPCWPRIEYIKDQL-SLAYGDEELFWRQKSRQKWLA 324
Query: 296 DGDANSKFFHSVLAARRRINSLSSILVDGVVVEGVQPVRQAVFTHSKNHFLAPIMTRPSV 355
GD N+ FFH+ + + R N LS +L + + R + + F + T +
Sbjct: 325 GGDKNTGFFHATVHSERLKNELSFLLDEN----DQEFTRNSDKGKIASSFFENLFTSTYI 380
Query: 356 ----GHLQF--RKLSSVERGGLIKPFHEEEIKAAVWDCDSYKIPGPDGINLGFIKSFWHE 409
HL+ K++S LI+ E E+ AV+ + PGPDG F + W
Sbjct: 381 LTHNNHLEGLQAKVTSEMNHNLIQEVTELEVYNAVFSINKESAPGPDGFTALFFQQHWDL 440
Query: 410 MKAEIVRFVTEFHRNRKLSKGINSRFIALIPKVASPQSLNEFRPISLVGSLYKILAKILA 469
+K +I+ + F L + N I LIPK+ SPQ +++ RPISL LYKI++KIL
Sbjct: 441 VKHQILTEIFGFFETGVLPQDWNHTHICLIPKITSPQRMSDLRPISLCSVLYKIISKILT 500
Query: 470 NRLRQVIGSVVSEVQSAFVKNRQILDGILITNEVVDEARKS---KKDLLLFKVDFEKAYD 526
RL++ + ++VS QSAFV R I D IL+ +E++ R + K+ + FK D KAYD
Sbjct: 501 QRLKKHLPAIVSTTQSAFVPQRLISDNILVAHEMIHSLRTNDRISKEHMAFKTDMSKAYD 560
Query: 527 SVDWGYLDEVMGSMTFPTVW*KWIKECVGTATASVLVNGCPTDEFFLERGLRQGDPLSPF 586
V+W +L+ +M ++ F W WI CV + + SVL+NG P RG+RQGDPLSP
Sbjct: 561 RVEWPFLETMMTALGFNNKWISWIMNCVTSVSYSVLINGQPYGHIIPTRGIRQGDPLSPA 620
Query: 587 LFLLAAEGLNVLMKALVDAGLFKGYSVGRADPVVVSHLQFADDTLLIGNKSWANVRALRA 646
LF+L E L ++ AG G + V V+HL FADDTLL+ + L
Sbjct: 621 LFVLCTEALIHILNKAEQAGKITGIQF-QDKKVSVNHLLFADDTLLMCKATKQECEELMQ 679
Query: 647 GLILLEAMSGLKVNFHKSSLV-GVNIT---GSWLSEAASV-LGCKVGKIPFLYLGLS--I 699
L +SG +N +KS++ G N+ W+ + + L GK YLGL +
Sbjct: 680 CLSQYGQLSGQMINLNKSAITFGKNVDIQIKDWIKSRSGISLEGGTGK----YLGLPECL 735
Query: 700 GGDPRRLLFWEPVVNRIKNRLSGWQSRFLSFGGRLVLLKFVLTALPVYALSFFKAPSGII 759
G R L + + ++++RL+GW ++ LS GG+ VLLK + ALPVY +S FK P +
Sbjct: 736 SGSKRDLFGF--IKEKLQSRLTGWYAKTLSQGGKEVLLKSIALALPVYVMSCFKLPKNLC 793
Query: 760 SSIESLFNKFFWGGGEDKRKISWIRWDTLSLRKEYGGLGVTRLREFNLALLGKWCWRLLL 819
+ ++ F+W + KRKI W+ W L+L K+ GG G L+ FN ALL K WR+L
Sbjct: 794 QKLTTVMMDFWWNSMQQKRKIHWLSWQRLTLPKDQGGFGFKDLQCFNQALLAKQAWRVLQ 853
Query: 820 EKEALWRKVLVARY-GVADGGLEDGGRSCSSWWREIVRIRDGIGEGGEGWFGSCVRRRVG 878
EK +L+ +V +RY +D G S WR I+ R+ + +G +R +G
Sbjct: 854 EKGSLFSRVFQSRYFSNSDFLSATRGSRPSYAWRSILFGRELLMQG--------LRTVIG 905
Query: 879 DGAETDFWWDCWCGDVSLCERFSRLYDLTVNKLISVRNMILLGVDVGGEALRWRRRLWAW 938
+G +T W D W D S +R + V+ +S L+ L R L+ W
Sbjct: 906 NGQKTFVWTDKWLHDGSNRRPLNRRRFINVDLKVSQ----LIDPTSRNWNLNMLRDLFPW 961
Query: 939 EE-ELVEEFXALLLTVSLQESVTDRWIWLPTQDDGYSVRGAYDMLTSQEQPHLHQNLEL- 996
++ E++ + L D + WL + + YSV+ Y+ L+ Q L+Q ++
Sbjct: 962 KDVEIILKQRPLFFK-------EDSFCWLHSHNGLYSVKTGYEFLSKQVHHRLYQEAKVK 1014
Query: 997 ---------IWHTQVPLKVSILAWRLLRDRLPTKDNLANRGILPLEARMCVSSCGNEEDV 1047
IW+ K+ I W+ L +P +D L RGI + C+ E +
Sbjct: 1015 PSVNSLFDKIWNLHTAPKIRIFLWKALHGAIPVEDRLRTRGIRSDDG--CLMCDTENETI 1072
Query: 1048 NHLFLSCATFSALWPL 1063
NH+ C +W +
Sbjct: 1073 NHILFECPLARQVWAI 1088
>At1g47910 reverse transcriptase, putative
Length = 1142
Score = 382 bits (982), Expect = e-106
Identities = 283/928 (30%), Positives = 441/928 (47%), Gaps = 61/928 (6%)
Query: 162 SDHCPIVLTVDEK-NWGPRPVRLLKCWQDMPGYSDFVREKWGSFQVSGWGGFVLKEKLKL 220
SDH P++ T+ +K G + R K W G + + + W G FV EKL
Sbjct: 4 SDHSPVIATIADKIPRGKQNFRFDKRWIGKDGLLEAISQGWNLDSGFREGQFV--EKLTN 61
Query: 221 MKAALKEWHVANTLNLPSKIVSLKNRRAVLDSKGEEEELSEEELGELHGISSDIHSLSRL 280
+ A+ +W + +P ++++ +A LD +++ S EE+ EL + + R
Sbjct: 62 CRRAISKWRKSL---IPFGRQTIEDLKAELDVAQRDDDRSREEITEL---TLRLKEAYRD 115
Query: 281 NTSICWQQSRLNWLRDGDANSKFFHSVLAARRRINSLSSILVD-GVVVEGVQPVRQAVFT 339
+Q+SR W++ GD NSKFFH++ RR N ++ + + G+ ++ +
Sbjct: 116 EEQYWYQKSRSLWMKLGDNNSKFFHALTKQRRARNRITGLHDENGIWSIEDDDIQNIAVS 175
Query: 340 HSKNHFLA--PIMTRPSVGHLQFRKLSSVERGGLIKPFHEEEIKAAVWDCDSYKIPGPDG 397
+ +N F P + ++G +Q + L E E++AA++ K PGPDG
Sbjct: 176 YFQNLFTTANPQVFDEALGEVQVLITDRIN-DLLTADATECEVRAALFMIHPEKAPGPDG 234
Query: 398 INLGFIKSFWHEMKAEIVRFVTEFHRNRKLSKGINSRFIALIPKVASPQSLNEFRPISLV 457
+ F + W +K++++ V F + K +N+ I LIPK P + E RPISL
Sbjct: 235 MTALFFQKSWAIIKSDLLSLVNSFLQEGVFDKRLNTTNICLIPKTERPTRMTELRPISLC 294
Query: 458 GSLYKILAKILANRLRQVIGSVVSEVQSAFVKNRQILDGILITNEVVDEARKS---KKDL 514
YK+++KIL RL+ V+ +++SE QSAFV R I D ILI E+ R + K
Sbjct: 295 NVGYKVISKILCQRLKTVLPNLISETQSAFVDGRLISDNILIAQEMFHGLRTNSSCKDKF 354
Query: 515 LLFKVDFEKAYDSVDWGYLDEVMGSMTFPTVW*KWIKECVGTATASVLVNGCPTDEFFLE 574
+ K D KAYD V+W +++ ++ M F W WI C+ T VL+NG P E
Sbjct: 355 MAIKTDMSKAYDQVEWNFIEALLRKMGFCEKWISWIMWCITTVQYKVLINGQPKGLIIPE 414
Query: 575 RGLRQGDPLSPFLFLLAAEGLNVLMKALVDAGLFKGYSVGRADPVVVSHLQFADDTLLIG 634
RGLRQGDPLSP+LF+L E L ++ L G V P V SHL FADD+L
Sbjct: 415 RGLRQGDPLSPYLFILCTEVLIANIRKAERQNLITGIKVATPSPAV-SHLLFADDSLFFC 473
Query: 635 NKSWANVRALRAGLILLEAMSGLKVNFHKSSL-VGVNITGSWLSEAASVLGCKVGKIPFL 693
+ + L E++SG ++NF KSS+ G + S ++ +LG
Sbjct: 474 KANKEQCGIILEILKQYESVSGQQINFSKSSIQFGHKVEDSIKADIKLILGIHNLGGMGS 533
Query: 694 YLGL--SIGGDPRRLLFWEPVVNRIKNRLSGWQSRFLSFGGRLVLLKFVLTALPVYALSF 751
YLGL S+GG ++ + V +R+++R++GW ++FLS GG+ V++K V LP Y +S
Sbjct: 534 YLGLPESLGGSKTKVFSF--VRDRLQSRINGWSAKFLSKGGKEVMIKSVAATLPRYVMSC 591
Query: 752 FKAPSGIISSIESLFNKFFWGGGEDKRKISWIRWDTLSLRKEYGGLGVTRLREFNLALLG 811
F+ P I S + S KF+W D R + W+ WD L K GGLG + +FN ALL
Sbjct: 592 FRLPKAITSKLTSAVAKFWWSSNGDSRGMHWMAWDKLCSSKSDGGLGFRNVDDFNSALLA 651
Query: 812 KWCWRLLLEKEALWRKVLVARYGVADGGLED-GGRSCSSWWREIVRIRDGIGEGGEGWFG 870
K WRL+ ++L+ KV RY L+ S S WR ++ R + +G
Sbjct: 652 KQLWRLITAPDSLFAKVFKGRYFRKSNPLDSIKSYSPSYGWRSMISARSLVYKG------ 705
Query: 871 SCVRRRVGDGAETDFWWDCWCGDVSLCERFSRLYDLTVNKLISVRNMILLGVDVGGEALR 930
+ +RVG GA W D W + R ++ V+ + V+++I
Sbjct: 706 --LIKRVGSGASISVWNDPWI--PAQFPRPAKYGGSIVDPSLKVKSLI------------ 749
Query: 931 WRRRLWAWEEELVEEF-----XALLLTVSL-QESVTDRWIWLPTQDDGYSVRGAYDML-- 982
R W +L++E L+ + + ++ D W T+ Y+V+ Y
Sbjct: 750 -DSRSNFWNIDLLKELFDPEDVPLISALPIGNPNMEDTLGWHFTKAGNYTVKSGYHTARL 808
Query: 983 -----TSQEQPHLHQNLELIWHTQVPLKVSILAWRLLRDRLPTKDNLANRGILPLEARMC 1037
T+ P L IW Q P K+ W++L +P +NL RGIL + C
Sbjct: 809 DLNEGTTLIGPDLTTLKAYIWKVQCPPKLRHFLWQILSGCVPVSENLRKRGILC--DKGC 866
Query: 1038 VSSCGNEEDVNHLFLSCATFSALWPLVQ 1065
VS +EE +NH C +W L Q
Sbjct: 867 VSCGASEESINHTLFQCHPARQIWALSQ 894
>At1g24640 hypothetical protein
Length = 1270
Score = 377 bits (969), Expect = e-104
Identities = 305/1048 (29%), Positives = 475/1048 (45%), Gaps = 82/1048 (7%)
Query: 1 VGASRGMVTIWDRVEVEVWSTVRGVHFLLIHGRFLKSNEEFYIFNMYAPCDRRAKQVLWN 60
VG G+ +W + V ++ V L+ + F + +Y DR + W
Sbjct: 25 VGKCGGLALLW---KSSVQVDLKFVDKNLMDAQVQFGAVNFCVSCVYGDPDRSKRSQAWE 81
Query: 61 SLSSRLLSLGS-SKVCVCGDFNTVRSVDERRSVRGSQVVD-DCAPFNDFIEDRVLINLPL 118
+S + +G K C+ GDFN + E+ G + D DC FN+ I+ L+ +P
Sbjct: 82 RISR--IGVGRRDKWCMFGDFNDILHNGEKNG--GPRRSDLDCKAFNEMIKGCDLVEMPA 137
Query: 119 CGRKFTWYN--GDGRSMSTLDRFLLSEEWCMVWPTCLQV-AQLRGLSDHCPIVLTVDEKN 175
G FTW GD LDR ++EW +P Q RG SDH P+++ +
Sbjct: 138 HGNGFTWAGRRGDHWIQCRLDRAFGNKEWFCFFPVSNQTFLDFRG-SDHRPVLIKLMSSQ 196
Query: 176 WGPR-PVRLLKCWQDMPGYSDFVREKWGSFQVSGWGGFVLKEKLKLMKAALKEWHVANTL 234
R R K + + + W + + ++L+ + +L W N L
Sbjct: 197 DSYRGQFRFDKRFLFKEDVKEAIIRTWSRGKHGT--NISVADRLRACRKSLSSWKKQNNL 254
Query: 235 NLPSKIVSLKNRRAVLDSKGEEEELSEEELGELHGISSDIHSLSRLNTSICWQQSRLNWL 294
N KI L+ A L+ +E+ L + + D+ R + Q+SR WL
Sbjct: 255 NSLDKINQLE---AALE---KEQSLVWPIFQRVSVLKKDLAKAYREEEAYWKQKSRQKWL 308
Query: 295 RDGDANSKFFHSVLAA---RRRINSLSSILVDGVVVEGVQPVRQAVFTHSKNHFLAPIMT 351
R G+ NSK+FH+ + R+RI L V+G + + + N F + +
Sbjct: 309 RSGNRNSKYFHAAVKQNRQRKRIEKLKD--VNGNMQTSEAAKGEVAAAYFGNLFKS---S 363
Query: 352 RPSVGHLQFR----KLSSVERGGLIKPFHEEEIKAAVWDCDSYKIPGPDGINLGFIKSFW 407
PS F ++S V L+ +EIK AV+ PGPDG++ F + +W
Sbjct: 364 NPSGFTDWFSGLVPRVSEVMNESLVGEVSAQEIKEAVFSIKPASAPGPDGMSALFFQHYW 423
Query: 408 HEMKAEIVRFVTEFHRNRKLSKGINSRFIALIPKVASPQSLNEFRPISLVGSLYKILAKI 467
+ ++ V +F + + N + LIPK P + + RPISL LYKI++KI
Sbjct: 424 STVGNQVTSEVKKFFADGIMPAEWNYTHLCLIPKTQHPTEMVDLRPISLCSVLYKIISKI 483
Query: 468 LANRLRQVIGSVVSEVQSAFVKNRQILDGILITNEVVDEAR---KSKKDLLLFKVDFEKA 524
+A RL+ + +VS+ QSAFV R I D IL+ +E+V + + + + K D KA
Sbjct: 484 MAKRLQPWLPEIVSDTQSAFVSERLITDNILVAHELVHSLKVHPRISSEFMAVKSDMSKA 543
Query: 525 YDSVDWGYLDEVMGSMTFPTVW*KWIKECVGTATASVLVNGCPTDEFFLERGLRQGDPLS 584
YD V+W YL ++ S+ F W WI CV + T SVL+N CP L+RGLRQGDPLS
Sbjct: 544 YDRVEWSYLRSLLLSLGFHLKWVNWIMVCVSSVTYSVLINDCPFGLIILQRGLRQGDPLS 603
Query: 585 PFLFLLAAEGLNVLMKALVDAGLFKGYSVGRADPVVVSHLQFADDTLLIGNKSWANVRAL 644
PFLF+L EGL L+ G +G P+V HL FADD+L + S L
Sbjct: 604 PFLFVLCTEGLTHLLNKAQWEGALEGIQFSENGPMV-HHLLFADDSLFLCKASREQSLVL 662
Query: 645 RAGLILLEAMSGLKVNFHKSSLV-GVNITGSWLSEAASVLGCKVGKIPFLYLGLSIGGDP 703
+ L + +G +N +KSS+ G + + LG YLGL
Sbjct: 663 QKILKVYGNATGQTINLNKSSITFGEKVDEQLKGTIRTCLGIFTEGGAGTYLGLPECFSG 722
Query: 704 RRLLFWEPVVNRIKNRLSGWQSRFLSFGGRLVLLKFVLTALPVYALSFFKAPSGIISSIE 763
++ + +R+K +L W +R LS GG+ VLLK V A+PV+A+S FK P ++E
Sbjct: 723 SKVDMLHYLKDRLKEKLDVWFTRCLSQGGKEVLLKSVALAMPVFAMSCFKLPITTCENLE 782
Query: 764 SLFNKFFWGGGEDKRKISWIRWDTLSLRKEYGGLGVTRLREFNLALLGKWCWRLLLEKEA 823
S F+W + RKI W W+ L L K+ GGLG ++ FN ALL K WRLL +
Sbjct: 783 SAMASFWWDSCDHSRKIHWQSWERLCLPKDSGGLGFRDIQSFNQALLAKQAWRLLHFPDC 842
Query: 824 LWRKVLVARYGVADGGLEDG-GRSCSSWWREIVRIRDGIGEGGEGWFGSCVRRRVGDGAE 882
L ++L +RY A L+ + S WR I+ R+ + +G +++RVGDGA
Sbjct: 843 LLSRLLKSRYFDATDFLDAALSQRPSFGWRSILFGRELLSKG--------LQKRVGDGAS 894
Query: 883 TDFWWDCWCGDVSLCE--RFSRLYDLTVNKLISVRNMILLGVDVGGEALRWRRRLWAWEE 940
W D W D R + +YD+T + V+ ++ R W+E
Sbjct: 895 LFVWIDPWIDDNGFRAPWRKNLIYDVT----LKVKALL-------------NPRTGFWDE 937
Query: 941 ELVE-----EFXALLLTVSLQESVTDRWIWLPTQDDGYSVRGAYDMLTSQEQPHLHQNLE 995
E++ E + + S D ++W + +SV+ AY + + +L +
Sbjct: 938 EVLHDLFLPEDILRIKAIKPVISQADFFVWKLNKSGDFSVKSAYWLAYQTKSQNLRSEVS 997
Query: 996 L----------IWHTQVPLKVSILAWRL 1013
+ +W+ Q K+ I W++
Sbjct: 998 MQPSTLGLKTQVWNLQTDPKIKIFLWKV 1025
>At2g31080 putative non-LTR retroelement reverse transcriptase
Length = 1231
Score = 377 bits (968), Expect = e-104
Identities = 305/1054 (28%), Positives = 471/1054 (43%), Gaps = 121/1054 (11%)
Query: 42 YIFNMYAPCDRRAKQVLWNSLSSRLLSLGSSKVCVCGDFNTVRSVDERRSVRGSQVVDDC 101
++ +YA + LW L + L + + GDFNT+ VDER G D
Sbjct: 2 HLIVVYAAPSVSRRSGLWGELKDVVNGL-EGPLLIGGDFNTILWVDERMGGNGRLSPDSL 60
Query: 102 APFNDFIEDRVLINLPLCGRKFTWYNGDGRSM---STLDRFLLSEEWCMVWPTCLQVAQL 158
A F D+I + LI+L G KFTW G S LDR + + W +
Sbjct: 61 A-FGDWINELSLIDLGFKGNKFTWRRGRQESTVVAKRLDRVFVCAHARLKWQEAVVSHLP 119
Query: 159 RGLSDHCPIVLTVDEKNWGPRPVRLLKCWQDMPGYSDFVREKWGSFQVSGWGGFVLKEKL 218
SDH P+ + ++ P R L+ W RE +G V KEKL
Sbjct: 120 FMASDHAPLYVQLE-----PLQQRKLRKWN---------REVFGDIHVR-------KEKL 158
Query: 219 KLMKAALKEWHVANTLNLPSKIVSLKNRRAVLDSKGEEEELSEEELGELHGISSDIHSLS 278
+ +K + +L ++ L++EE+ + ++ +
Sbjct: 159 ---------------------VADIKEVQDLLGVVLSDDLLAKEEV-----LLKEMDLVL 192
Query: 279 RLNTSICWQQSRLNWLRDGDANSKFFHSVLAARRRINSLSSILVDGV--VVEGVQPVRQA 336
++ +Q+SR ++ GD N+ FFH+ RRR N + S+ D V + V+ A
Sbjct: 193 EQEETLWFQKSREKYIELGDRNTTFFHTSTIIRRRRNRIESLKGDDDRWVTDKVELEAMA 252
Query: 337 VFTHSKNHFLAPIM-TRPSVGHLQFRKLSSVERGGLIKPFHEEEIKAAVWDCDSYKIPGP 395
+ + + + L + R + F +S E+ L++ F + E+ +AV +K PGP
Sbjct: 253 LTYYKRLYSLEDVSEVRNMLPTGGFASISEAEKAALLQAFTKAEVVSAVKSMGRFKAPGP 312
Query: 396 DGINLGFIKSFWHEMKAEIVRFVTEFHRNRKLSKGINSRFIALIPKVASPQSLNEFRPIS 455
DG F + W + + RFV EF L N + LI KVA P+ + +FRP+S
Sbjct: 313 DGYQPVFYQQCWETVGPSVTRFVLEFFETGVLPASTNDALLVLIAKVAKPERIQQFRPVS 372
Query: 456 LVGSLYKILAKILANRLRQVIGSVVSEVQSAFVKNRQILDGILITNEVVDEAR--KSKKD 513
L L+KI+ K++ RL+ VI ++ Q++F+ R +D I++ E V R K +K
Sbjct: 373 LCNVLFKIITKMMVTRLKNVISKLIGPAQASFIPGRLSIDNIVLVQEAVHSMRRKKGRKG 432
Query: 514 LLLFKVDFEKAYDSVDWGYLDEVMGSMTFPTVW*KWIKECVGTATASVLVNGCPTDEFFL 573
+L K+D EKAYD V W +L E + + W I V + SVL NG TD F
Sbjct: 433 WMLLKLDLEKAYDRVRWDFLQETLEAAGLSEGWTSRIMAGVTDPSMSVLWNGERTDSFVP 492
Query: 574 ERGLRQGDPLSPFLFLLAAEGLNVLMKALVDAGLFKGYSVGRADPVVVSHLQFADDTLLI 633
RGLRQGDPLSP+LF+L E L L++A V +K +V +SH+ FADD +L
Sbjct: 493 ARGLRQGDPLSPYLFVLCLERLCHLIEASVGKREWKPIAVS-CGGSKLSHVCFADDLILF 551
Query: 634 GNKSWANVRALRAGLILLEAMSGLKVNFHKSSLV---GVNITGSWLSEAASVLGC--KVG 688
S A +R +R L SG KV+ KS + V+ L S +GC ++G
Sbjct: 552 AEASVAQIRIIRRVLERFCEASGQKVSLEKSKIFFSHNVSREMEQLISEESGIGCTKELG 611
Query: 689 KIPFLYLGLSIGGDPRRLLFWEPVVNRIKNRLSGWQSRFLSFGGRLVLLKFVLTALPVYA 748
K YLG+ I + V+ R+ RL+GW+ R LS GR+ L K VL+++PV+
Sbjct: 612 K----YLGMPILQKRMNKETFGEVLERVSARLAGWKGRSLSLAGRITLTKAVLSSIPVHV 667
Query: 749 LSFFKAPSGIISSIESLFNKFFWGGGEDKRKISWIRWDTLSLRKEYGGLGVTRLREFNLA 808
+S P + +++ F WG +K+K + W + K GG+G+ R+ N A
Sbjct: 668 MSAILLPVSTLDTLDRYSRTFLWGSTMEKKKQHLLSWRKICKPKAEGGIGLRSARDMNKA 727
Query: 809 LLGKWCWRLLLEKEALWRKVLVARYGVADGGLEDGG------RSCSSWWREIVRIRDGIG 862
L+ K WRLL +KE+LW +V+ +Y V GG++D R S+W V +R+ +
Sbjct: 728 LVAKVGWRLLQDKESLWARVVRKKYKV--GGVQDTSWLKPQPRWSSTWRSVAVGLREVVV 785
Query: 863 EGGEGWFGSCVRRRVGDGAETDFWWDCWCGDVSLCERFSRLYDLTVNKLISVRNMILLGV 922
+ G GW GDG FW D W L E LG
Sbjct: 786 K-GVGWV-------PGDGCTIRFWLDRWLLQEPLVE---------------------LGT 816
Query: 923 DV--GGEALRWRRRLW----AWEEELV-----EEFXALLLTVSLQESV--TDRWIWLPTQ 969
D+ GE ++ W W E++ E LL+V +Q + D W TQ
Sbjct: 817 DMIPEGERIKVAADYWLPGSGWNLEILGLYLPETVKRRLLSVVVQVFLGNGDEISWKGTQ 876
Query: 970 DDGYSVRGAYDMLTSQ--EQPHLHQNLELIWHTQVPLKVSILAWRLLRDRLPTKDNLANR 1027
D ++VR AY +L ++P++ IW P +V + W + ++ + T R
Sbjct: 877 DGAFTVRSAYSLLQGDVGDRPNMGSFFNRIWKLITPERVRVFIWLVSQNVIMTNVERVRR 936
Query: 1028 GILPLEARMCVSSCGNEEDVNHLFLSCATFSALW 1061
+ E +C G EE + H+ C +W
Sbjct: 937 HL--SENAICSVCNGAEETILHVLRDCPAMEPIW 968
>At2g25550 putative non-LTR retroelement reverse transcriptase
Length = 1750
Score = 376 bits (966), Expect = e-104
Identities = 306/1126 (27%), Positives = 516/1126 (45%), Gaps = 91/1126 (8%)
Query: 2 GASRGMVTIWDRVEVEVWSTVRGVHFLLIHGRFLKSNEEFYIFNMYAPCDRRAKQVLWNS 61
G S G+ +W V ++ LI +N+ FY+ +Y + + LW +
Sbjct: 444 GRSGGLALMWKN---NVSLSLISQDERLIDSHVTFNNKSFYLSCVYGHPTQSERHQLWQT 500
Query: 62 LSSRLLSLGSSKVCVCGDFNTVRSVDERRSVRGSQVVDDCA--PFNDFIEDRVLINLPLC 119
L + +++ + GDFN + S E+ G + ++ F + + + ++
Sbjct: 501 LE-HISDNRNAEWLLVGDFNEILSNAEKI---GGPMREEWTFRNFRNMVSHCDIEDMRSK 556
Query: 120 GRKFTWYNGDGRSMST---LDRFLLSEEWCMVWPTC-LQVAQLRGLSDHCPIVLTVDEKN 175
G +F+W G+ + + LDR ++ W +P ++ G SDH P+++ +E
Sbjct: 557 GDRFSWV-GERHTHTVKCCLDRVFINSAWTATFPYAEIEFLDFTG-SDHKPVLVHFNESF 614
Query: 176 WGPRPVRLLKCWQ---DMPGYSDFVREKWGSFQVSGWGGFVLKEKLKLMKAALKEWHVAN 232
PR +L + D+P + V+ W + + S + E++ + A+ A+
Sbjct: 615 --PRRSKLFRFDNRLIDIPTFKRIVQTSWRTNRNSR--STPITERISSCRQAMARLKHAS 670
Query: 233 TLNLPSKIVSLKN--RRAVLDSKGEEEELSEEELGELHGISSDIHSLSRLNTSICWQQ-S 289
LN +I L++ RA+ ++ + +L + L SD I W+Q S
Sbjct: 671 NLNSEQRIKKLQSSLNRAMESTRRVDRQLIPQLQESLAKAFSD--------EEIYWKQKS 722
Query: 290 RLNWLRDGDANSKFFHSVLAARRRINSLSSILVD-GVVVEGVQPVRQAVFTHSKNHFLAP 348
R W+++GD N+ +FH+ R N +++I+ D G + G + + N F
Sbjct: 723 RNQWMKEGDQNTGYFHACTKTRYSQNRVNTIMDDQGRMFTGDKEIGNHAQDFFTNIFSTN 782
Query: 349 IMTRPSVGHLQFRK-LSSVERGGLIKPFHEEEIKAAVWDCDSYKIPGPDGINLGFIKSFW 407
+ + F+ +++ L K F + EI A+ K PGPDG+ F K+ W
Sbjct: 783 GIKVSPIDFADFKSTVTNTVNLDLTKEFSDTEIYDAICQIGDDKAPGPDGLTARFYKNCW 842
Query: 408 HEMKAEIVRFVTEFHRNRKLSKGINSRFIALIPKVASPQSLNEFRPISLVGSLYKILAKI 467
+ +++ V +F + IN I +IPK+ +P +L+++RPI+L LYK+++K
Sbjct: 843 DIVGYDVILEVKKFFETSFMKPSINHTNICMIPKITNPTTLSDYRPIALCNVLYKVISKC 902
Query: 468 LANRLRQVIGSVVSEVQSAFVKNRQILDGILITNEVVDEARKSK---KDLLLFKVDFEKA 524
L NRL+ + S+VS+ Q+AF+ R I D ++I +EV+ + K K + K D KA
Sbjct: 903 LVNRLKSHLNSIVSDSQAAFIPGRIINDNVMIAHEVMHSLKVRKRVSKTYMAVKTDVSKA 962
Query: 525 YDSVDWGYLDEVMGSMTFPTVW*KWIKECVGTATASVLVNGCPTDEFFLERGLRQGDPLS 584
YD V+W +L+ M F W WI V + SVL+NG P RG+RQGDPLS
Sbjct: 963 YDRVEWDFLETTMRLFGFCNKWIGWIMAAVKSVHYSVLINGSPHGYITPTRGIRQGDPLS 1022
Query: 585 PFLFLLAAEGLNVLMKALVDAGLFKGYSVGRADPVVVSHLQFADDTLLIGNKSWANVRAL 644
P+LF+L + L+ L+ +G +G +G P + +HLQFADD+L + N +AL
Sbjct: 1023 PYLFILCGDILSHLINGRASSGDLRGVRIGNGAPAI-THLQFADDSLFFCQANVRNCQAL 1081
Query: 645 RAGLILLEAMSGLKVNFHKSSLV-GVNITGSWLSEAASVLGCKVGKIPFLYLGLSIGGDP 703
+ + E SG K+N KS + G + GS S +L YLGL
Sbjct: 1082 KDVFDVYEYYSGQKINVQKSMITFGSRVYGSTQSRLKQILEIPNQGGGGKYLGLPEQFGR 1141
Query: 704 RRLLFWEPVVNRIKNRLSGWQSRFLSFGGRLVLLKFVLTALPVYALSFFKAPSGIISSIE 763
++ +E +++R+K R S W +RFLS G+ ++LK V A+PVYA+S FK P GI+S IE
Sbjct: 1142 KKKEMFEYIIDRVKKRTSTWSARFLSPAGKEIMLKSVALAMPVYAMSCFKLPKGIVSEIE 1201
Query: 764 SLFNKFFWGGGEDKRKISWIRWDTLSLRKEYGGLGVTRLREFNLALLGKWCWRLLLEKEA 823
SL F+W ++R I W+ W L K+ GGLG L +FN ALL K WRL+ +
Sbjct: 1202 SLLMNFWWEKASNQRGIPWVAWKRLQYSKKEGGLGFRDLAKFNDALLAKQAWRLIQYPNS 1261
Query: 824 LWRKVLVARYGVADGGLEDGGRSCSSW-WREIVRIRDGIGEGGEGWFGSCVRRRVGDGAE 882
L+ +V+ ARY L+ R S+ W ++ DGI +G R +GDG
Sbjct: 1262 LFARVMKARYFKDVSILDAKVRKQQSYGWASLL---DGIALLKKG-----TRHLIGDGQN 1313
Query: 883 TDFWWDCWCGD-----VSLCERFSRLYDLTVNKLISVRNMILLGVDVGGEALRWRRRLWA 937
D ++ E + ++T+N L + +
Sbjct: 1314 IRIGLDNIVDSHPPRPLNTEETYK---EMTINNLFERKG-----------------SYYF 1353
Query: 938 WEEELVEEF-----XALLLTVSLQES-VTDRWIWLPTQDDGYSVRGAYDMLTSQEQPHL- 990
W++ + +F + + L +S D+ IW Y+VR Y +LT ++
Sbjct: 1354 WDDSKISQFVDQSDHGFIHRIYLAKSKKPDKIIWNYNTTGEYTVRSGYWLLTHDPSTNIP 1413
Query: 991 -----HQNLEL---IWHTQVPLKVSILAWRLLRDRLPTKDNLANRGILPLEARMCVSSCG 1042
H +++L IW+ + K+ WR L L T + L RG+ + C
Sbjct: 1414 AINPPHGSIDLKTRIWNLPIMPKLKHFLWRALSQALATTERLTTRGMRIDPS--CPRCHR 1471
Query: 1043 NEEDVNHLFLSCATFSALWPLVQAWLGVVGVDSQSTSDHLVQFINY 1088
E +NH +C + W L + L + S +++ +N+
Sbjct: 1472 ENESINHALFTCPFATMAWRLSDSSLIRNQLMSNDFEENISNILNF 1517
>At2g31520 putative non-LTR retroelement reverse transcriptase
Length = 1524
Score = 375 bits (964), Expect = e-104
Identities = 308/1128 (27%), Positives = 517/1128 (45%), Gaps = 95/1128 (8%)
Query: 2 GASRGMVTIWDRVEVEVWSTVRGVHFLLIHGRFLKSNEEFYIFNMYAPCDRRAKQVLWNS 61
G S G+ +W V ++ LI +N+ FY+ +Y + + LW +
Sbjct: 218 GRSGGLALMWKN---NVSLSLISQDERLIDSHVTFNNKSFYLSCVYGHPTQSERHQLWQT 274
Query: 62 LSSRLLSLGSSKVCVCGDFNTVRSVDERRSVRGSQVVDDCA--PFNDFIEDRVLINLPLC 119
L + +++ + GDFN + S E+ G + ++ F + + + ++
Sbjct: 275 LE-HISDNRNAEWLLVGDFNEILSNAEKI---GGPMREEWTFRNFRNMVSHCDIEDMRSK 330
Query: 120 GRKFTWYNGDGRSMST---LDRFLLSEEWCMVWPTC-LQVAQLRGLSDHCPIVLTVDEKN 175
G +F+W G+ + + LDR ++ W +P + G SDH P+++ +E
Sbjct: 331 GDRFSWV-GERHTHTVKCCLDRVFINSAWTATFPYAETEFLDFTG-SDHKPVLVHFNESF 388
Query: 176 WGPRPVRLLKCWQ---DMPGYSDFVREKWGSFQVSGWGGFVLKEKLKLMKAALKEWHVAN 232
PR +L + D+P + V+ W + + S + E++ + A+ A+
Sbjct: 389 --PRRSKLFRFDNRLIDIPTFKRIVQTSWRTNRNSR--STPITERISSCRQAMARLKHAS 444
Query: 233 TLNLPSKIVSLKN--RRAVLDSKGEEEELSEEELGELHGISSDIHSLSRLNTSICWQQ-S 289
LN +I L++ RA+ ++ + +L + L SD I W+Q S
Sbjct: 445 NLNSEQRIKKLQSSLNRAMESTRRVDRQLIPQLQESLAKAFSD--------EEIYWKQKS 496
Query: 290 RLNWLRDGDANSKFFHSVLAARRRINSLSSILVD-GVVVEGVQPVRQAVFTHSKNHFLAP 348
R W+++GD N+ +FH+ R N +++I+ D G + G + + N F
Sbjct: 497 RNQWMKEGDQNTGYFHACTKTRYSQNRVNTIMDDQGRMFTGDKEIGNHAQDFFTNIFSTN 556
Query: 349 IMTRPSVGHLQFRK-LSSVERGGLIKPFHEEEIKAAVWDCDSYKIPGPDGINLGFIKSFW 407
+ + F+ +++ L K F + EI A+ K PGPDG+ F K+ W
Sbjct: 557 GIKVSPIDFADFKSTVTNTVNLDLTKEFSDTEIYDAICQIGDDKAPGPDGLTARFYKNCW 616
Query: 408 HEMKAEIVRFVTEFHRNRKLSKGINSRFIALIPKVASPQSLNEFRPISLVGSLYKILAKI 467
+ +++ V +F + IN I +IPK+ +P +L+++RPI+L LYK+++K
Sbjct: 617 DIVGYDVILEVKKFFETSFMKPSINHTNICMIPKITNPTTLSDYRPIALCNVLYKVISKC 676
Query: 468 LANRLRQVIGSVVSEVQSAFVKNRQILDGILITNEVVDEARKSK---KDLLLFKVDFEKA 524
L NRL+ + S+VS+ Q+AF+ R I D ++I +EV+ + K K + K D KA
Sbjct: 677 LVNRLKSHLNSIVSDSQAAFIPGRIINDNVMIAHEVMHSLKVRKRVSKTYMAVKTDVSKA 736
Query: 525 YDSVDWGYLDEVMGSMTFPTVW*KWIKECVGTATASVLVNGCPTDEFFLERGLRQGDPLS 584
YD V+W +L+ M F W WI V + SVL+NG P RG+RQGDPLS
Sbjct: 737 YDRVEWDFLETTMRLFGFCNKWIGWIMAAVKSVHYSVLINGSPHGYITPTRGIRQGDPLS 796
Query: 585 PFLFLLAAEGLNVLMKALVDAGLFKGYSVGRADPVVVSHLQFADDTLLIGNKSWANVRAL 644
P+LF+L + L+ L+ +G +G +G P + +HLQFADD+L + N +AL
Sbjct: 797 PYLFILCGDILSHLINGRASSGDLRGVRIGNGAPAI-THLQFADDSLFFCQANVRNCQAL 855
Query: 645 RAGLILLEAMSGLKVNFHKSSLV-GVNITGSWLSEAASVLGCKVGKIPFLYLGLSIGGDP 703
+ + E SG K+N KS + G + GS S+ +L YLGL
Sbjct: 856 KDVFDVYEYYSGQKINVQKSMITFGSRVYGSTQSKLKQILEIPNQGGGGKYLGLPEQFGR 915
Query: 704 RRLLFWEPVVNRIKNRLSGWQSRFLSFGGRLVLLKFVLTALPVYALSFFKAPSGIISSIE 763
++ +E +++R+K R S W +RFLS G+ ++LK V A+PVYA+S FK P GI+S IE
Sbjct: 916 KKKEMFEYIIDRVKKRTSTWSARFLSPAGKEIMLKSVALAMPVYAMSCFKLPKGIVSEIE 975
Query: 764 SLFNKFFWGGGEDKRKISWIRWDTLSLRKEYGGLGVTRLREFNLALLGKWCWRLLLEKEA 823
SL F+W ++R I W+ W L K+ GGLG L +FN ALL K WRL+ +
Sbjct: 976 SLLMNFWWEKASNQRGIPWVAWKRLQYSKKEGGLGFRDLAKFNDALLAKQAWRLIQYPNS 1035
Query: 824 LWRKVLVARYGVADGGLEDGGRSCSSW-WREIVRIRDGIGEGGEGWFGSCVRRRVGDGAE 882
L+ +V+ ARY L+ R S+ W ++ DGI +G R +GDG
Sbjct: 1036 LFARVMKARYFKDVSILDAKVRKQQSYGWASLL---DGIALLKKG-----TRHLIGDGQN 1087
Query: 883 TDFWWDCWCGD-----VSLCERFSRLYDLTVNKLISVRNMILLGVDVGGEALRWRRRLWA 937
D ++ E + ++T+N L + +
Sbjct: 1088 IRIGLDNIVDSHPPRPLNTEETYK---EMTINNLFERKG-----------------SYYF 1127
Query: 938 WEEELVEEF-----XALLLTVSLQES-VTDRWIWLPTQDDGYSVRGAYDMLTSQEQPHL- 990
W++ + +F + + L +S D+ IW Y+VR Y +LT ++
Sbjct: 1128 WDDSKISQFVDQSDHGFIHRIYLAKSKKPDKIIWNYNTTGEYTVRSGYWLLTHDPSTNIP 1187
Query: 991 -----HQNLEL---IWHTQVPLKVSILAWRLLRDRLPTKDNLANRG--ILPLEARMCVSS 1040
H +++L IW+ + K+ WR L L T + L RG I P+ C
Sbjct: 1188 AINPPHGSIDLKTRIWNLPIMPKLKHFLWRALSQALATTERLTTRGMRIDPI----CPRC 1243
Query: 1041 CGNEEDVNHLFLSCATFSALWPLVQAWLGVVGVDSQSTSDHLVQFINY 1088
E +NH +C + W L + L + S +++ +N+
Sbjct: 1244 HRENESINHALFTCPFATMAWWLSDSSLIRNQLMSNDFEENISNILNF 1291
>At1g25430 hypothetical protein
Length = 1213
Score = 373 bits (958), Expect = e-103
Identities = 293/1040 (28%), Positives = 493/1040 (47%), Gaps = 49/1040 (4%)
Query: 46 MYAPCDRRAKQVLWNSLSSRLLS--LGSSKVCVCGDFNTVRSVDERRSVRGSQVVDDCAP 103
+YA + +++ LW + + ++S +G V GDFN V + E + V +
Sbjct: 109 VYAANEVASRKELWIEIVNMVVSGIIGDRPWLVLGDFNQVLNPQEHSNPVSLNVDINMRD 168
Query: 104 FNDFIEDRVLINLPLCGRKFTWYNGDGRS--MSTLDRFLLSEEWCMVWPTCLQVAQLRGL 161
F D + L +L G FTW+N + +DR L+++ W ++P+ L +
Sbjct: 169 FRDCLLAAELSDLRYKGNTFTWWNKSHTTPVAKKIDRILVNDSWNALFPSSLGIFGSLDF 228
Query: 162 SDHCPIVLTVDEKNW-GPRPVRLLKCWQDMPGYSDFVREKWGSFQVSGWGGFVLKEKLKL 220
SDH + ++E + RP + + + VR+ W + V G F + +KLK
Sbjct: 229 SDHVSCGVVLEETSIKAKRPFKFFNYLLKNLDFLNLVRDNWFTLNVVGSSMFRVSKKLKA 288
Query: 221 MKAALKEWHVANTLNLPSKIVSLKNRRAVLDSKGEEEELSEEELGELHGISSDIHSLSRL 280
+K +K++ N L + + + + EL H L+
Sbjct: 289 LKKPIKDFSRLNYSELEKRTKEAHDFLIGCQDRTLADPTPINASFELEA-ERKWHILTAA 347
Query: 281 NTSICWQQSRLNWLRDGDANSKFFHSVLAARRRINSLSSI------LVDGVVVEGVQPVR 334
S Q+SR++W +GD N+K+FH + AR NS+S++ LVD EG+ +
Sbjct: 348 EESFFRQKSRISWFAEGDGNTKYFHRMADARNSSNSISALYDGNGKLVDSQ--EGILDLC 405
Query: 335 QAVFTHSKNHFLAP-IMTRPSVGHLQFRKLSSVERGGLIKPFHEEEIKAAVWDCDSYKIP 393
+ F + P +M + + L + S + L F E+I+AA++ K
Sbjct: 406 ASYFGSLLGDEVDPYLMEQNDMNLLLSYRCSPAQVCELESTFSNEDIRAALFSLPRNKSC 465
Query: 394 GPDGINLGFIKSFWHEMKAEIVRFVTEFHRNRKLSKGINSRFIALIPKVASPQSLNEFRP 453
GPDG F W + AE+ + EF + L K N+ I LIPK+ +P ++FRP
Sbjct: 466 GPDGFTAEFFIDSWSIVGAEVTDAIKEFFSSGCLLKQWNATTIVLIPKIVNPTCTSDFRP 525
Query: 454 ISLVGSLYKILAKILANRLRQVIGSVVSEVQSAFVKNRQILDGILITNEVVDEARKSK-K 512
IS + +LYK++A++L +RL++++ V+S QSAF+ R + + +L+ ++V S
Sbjct: 526 ISCLNTLYKVIARLLTDRLQRLLSGVISSAQSAFLPGRSLAENVLLATDLVHGYNWSNIS 585
Query: 513 DLLLFKVDFEKAYDSVDWGYLDEVMGSMTFPTVW*KWIKECVGTATASVLVNGCPTDEFF 572
+ KVD +KA+DSV W ++ + ++ P + WI +C+ T T +V +NG F
Sbjct: 586 PRGMLKVDLKKAFDSVRWEFVIAALRALAIPEKFINWISQCISTPTFTVSINGGNGGFFK 645
Query: 573 LERGLRQGDPLSPFLFLLAAEGLNVLMKALVDAGLFKGYSVGRADPVVVSHLQFADDTLL 632
+GLRQGDPLSP+LF+LA E + L+ + ++GL + +A + +SHL FADD ++
Sbjct: 646 STKGLRQGDPLSPYLFVLAMEAFSNLLHSRYESGLIHYHP--KASNLSISHLMFADDVMI 703
Query: 633 IGNKSWANVRALRAGLILLEAMSGLKVNFHKSSL--VGVNITGSWLSEAASVLGCKVGKI 690
+ ++ + L + SGLKVN KS L G+N S A + G +G +
Sbjct: 704 FFDGGSFSLHGICETLDDFASWSGLKVNKDKSHLYLAGLN---QLESNANAAYGFPIGTL 760
Query: 691 PFLYLGLSIGGDPRRLLFWEPVVNRIKNRLSGWQSRFLSFGGRLVLLKFVLTALPVYALS 750
P YLGL + R+ +EP++ +I R W ++ LSF GR+ L+ V+ + +S
Sbjct: 761 PIRYLGLPLMNRKLRIAEYEPLLEKITARFRSWVNKCLSFAGRIQLISSVIFGSINFWMS 820
Query: 751 FFKAPSGIISSIESLFNKFFWGGGEDKRKISWIRWDTLSLRKEYGGLGVTRLREFNLALL 810
F P G I IESL ++F W G ++ K + W L L K GGLG+ RL E+N L
Sbjct: 821 TFLLPKGCIKRIESLCSRFLWSGNIEQAKGIKVSWAALCLPKSEGGLGLRRLLEWNKTLS 880
Query: 811 GKWCWRLLLEKEALWRKVLVARYGVADGGL--EDGGRSCSSWWREIVRIRDGIGEGGEGW 868
+ WRL + K++LW + ++ G +GG+S S W+ ++ +R +
Sbjct: 881 MRLIWRLFVAKDSLWADWQHLHH-LSRGSFWAVEGGQSDSWTWKRLLSLRPLAHQ----- 934
Query: 869 FGSCVRRRVGDGAETDFWWDCWCGDVSLCERFSRLYDLTVNKLISVRNMILLGVDVGGEA 928
F C +VG+G + D+W+D W SL F + D+ + S+R +L V
Sbjct: 935 FLVC---KVGNGLKADYWYDNW---TSLGPLFRIIGDIGPS---SLRVPLLAKVASAFSE 985
Query: 929 LRWRRRL--WAWEEELVEEFXALLLTVSLQESVTDRWIWLPT--QDDGYSVRGAYDMLTS 984
WR + A + + + + + + QE V DR+ W G+S ++ +
Sbjct: 986 DGWRLPVSRSAPAKGIHDHLCTVPVPSTAQEDV-DRYEWSVNGFLCQGFSAAKTWEAI-- 1042
Query: 985 QEQPHLHQNLELIWHTQVPLKVSILAWRLLRDRLPTKDNLANRGILPLEARMCVSSCGNE 1044
+ + + IW K + W +RL T+ LA+ G + +A CV
Sbjct: 1043 RPKATVKSWASSIWFKGAVPKYAFNMWVSHLNRLLTRQRLASWGHIQSDA--CVLCSFAS 1100
Query: 1045 EDVNHLFLSCATFSALWPLV 1064
E +HL L C + +W LV
Sbjct: 1101 ESRDHLLLICEFSAQVWRLV 1120
>At2g05200 putative non-LTR retroelement reverse transcriptase
Length = 1229
Score = 370 bits (950), Expect = e-102
Identities = 288/986 (29%), Positives = 442/986 (44%), Gaps = 72/986 (7%)
Query: 104 FNDFIEDRVLINLPLCGRKFTW--YNGDGRSMSTLDRFLLSEEWCMVWPTCLQVAQLRGL 161
F FI L +L G F+W D LDR + + W +P+
Sbjct: 58 FRSFISKNGLWDLKYSGNPFSWRGMRYDWFVRQRLDRAMSNNSWLESFPSGRSEYLRFEG 117
Query: 162 SDHCPIVLTVDEKNWGPR-PVRLLKCWQDMPGYSDFVREKWGSFQVSGWGGFVLKEKLKL 220
SDH P+V+ VDE R R +D + ++E W + G + K+
Sbjct: 118 SDHRPLVVFVDEARVKRRGQFRFDNRLRDNDVVNALIQETW-----TNAGDASVLTKMNQ 172
Query: 221 MKAALKEWHVANTLNLPSKIVSLKNRRAVLDSKGEEEELSEEELGE--LHGISSDIHSLS 278
+ + W LN I + K EE L+ + + +++ +
Sbjct: 173 CRREIINWTRLQNLNSAELIEKTQ--------KALEEALTADPPNPTTIGALTATLEHAY 224
Query: 279 RLNTSICWQQSRLNWLRDGDANSKFFHSVLAARRRINSLSSILVDGVVVEGVQPVRQAVF 338
+L Q+SR+ WL GD N+ +FH+V RR N L+ ++ D + GV +
Sbjct: 225 KLEEQFWKQRSRVLWLHSGDRNTGYFHAVTRNRRTQNRLT-VMED---INGVAQHEEHQI 280
Query: 339 THSKNHFLAPIMTRPSVGHLQF------RKLSSVERGGLIKPFHEEEIKAAVWDCDSYKI 392
+ + + I T S G +S + L + ++EE+K AV+ ++ K
Sbjct: 281 SQIISGYFQQIFTSESDGDFSVVDEAIEPMVSQGDNDFLTRIPNDEEVKDAVFSINASKA 340
Query: 393 PGPDGINLGFIKSFWHEMKAEIVRFVTEFHRNRKLSKGINSRFIALIPKVASPQSLNEFR 452
PGPDG GF S+WH + ++ R + F ++ + +N I LIPK P+ + ++R
Sbjct: 341 PGPDGFTAGFYHSYWHIISTDVGREIRLFFTSKNFPRRMNETHIRLIPKDLGPRKVADYR 400
Query: 453 PISLVGSLYKILAKILANRLRQVIGSVVSEVQSAFVKNRQILDGILITNEVVDEARKS-- 510
PI+L YKI+AKI+ R++ ++ ++SE QSAFV R I D +LIT+EV+ R S
Sbjct: 401 PIALCNIFYKIVAKIMTKRMQLILPKLISENQSAFVPGRVISDNVLITHEVLHFLRTSSA 460
Query: 511 -KKDLLLFKVDFEKAYDSVDWGYLDEVMGSMTFPTVW*KWIKECVGTATASVLVNGCPTD 569
K + K D KAYD V+W +L +V+ F ++W W+ ECV + + S L+NG P
Sbjct: 461 KKHCSMAVKTDMSKAYDRVEWDFLKKVLQRFGFHSIWIDWVLECVTSVSYSFLINGTPQG 520
Query: 570 EFFLERGLRQGDPLSPFLFLLAAEGLNVLMKALVDAGLFKGYSVGRADPVVVSHLQFADD 629
+ RGLRQGDPLSP LF+L E L+ L G V P V+HL FADD
Sbjct: 521 KVVPTRGLRQGDPLSPCLFILCTEVLSGLCTRAQRLRQLPGVRVSINGP-RVNHLLFADD 579
Query: 630 TLLIGNKSWANVRALRAGLILLEAMSGLKVNFHKSSLVGVNIT-GSWLSEAASVLGCKVG 688
T+ + L L SG +NFHKSS+ + T S + +L +
Sbjct: 580 TMFFSKSDPESCNKLSEILSRYGKASGQSINFHKSSVTFSSKTPRSVKGQVKRILKIRKE 639
Query: 689 KIPFLYLGLSIGGDPRRLLFWEPVVNRIKNRLSGWQSRFLSFGGRLVLLKFVLTALPVYA 748
YLGL R+ + ++++I+ + W SRFLS G+ V+LK VL ++P+Y+
Sbjct: 640 GGTGKYLGLPEHFGRRKRDIFGAIIDKIRQKSHSWASRFLSQAGKQVMLKAVLASMPLYS 699
Query: 749 LSFFKAPSGIISSIESLFNKFFWGGGEDKRKISWIRWDTLSLRKEYGGLGVTRLREFNLA 808
+S FK PS + I+SL +F+W D RK SW+ W L+ K GGLG + N +
Sbjct: 700 MSCFKLPSALCRKIQSLLTRFWWDTKPDVRKTSWVAWSKLTNPKNAGGLGFRDIERCNDS 759
Query: 809 LLGKWCWRLLLEKEALWRKVLVARYGVADGGLEDGGRS-CSSWWREIVRIRDGIGEGGEG 867
LL K WRLL E+L ++L+ +Y + +E S S WR I+ R+ + E G G
Sbjct: 760 LLAKLGWRLLNSPESLLSRILLGKYCHSSSFMECKLPSQPSHGWRSIIAGREILKE-GLG 818
Query: 868 WFGSCVRRRVGDGAETDFWWDCWCGD----VSLCERFSRLYDLTVNKLISVRNMILLGVD 923
W + +G + W D W V + DL V+ LI+ +
Sbjct: 819 WL-------ITNGEKVSIWNDPWLSISKPLVPIGPALREHQDLRVSALINQNTL------ 865
Query: 924 VGGEALRWRRRLWAWEE--ELVEEFXALLLTVSLQES-VTDRWIWLPTQDDGYSVRGAYD 980
W W + ++ + L+ + S D+ WLP + Y+ R Y
Sbjct: 866 -----------QWDWNKIAVILPNYENLIKQLPAPSSRGVDKLAWLPVKSGQYTSRSGYG 914
Query: 981 M--LTSQEQPHLHQNLEL-IWHTQVPLKVSILAWRLLRDRLPTKDNLANRGILPLEARMC 1037
+ + S P N + +W Q K+ L W+ + LP L R I P A
Sbjct: 915 IASVASIPIPQTQFNWQSNLWKLQTLPKIKHLMWKAAMEALPVGIQLVRRHISPSAA--- 971
Query: 1038 VSSCGNEEDVNHLFLSCATFSALWPL 1063
CG E HLF C + +W L
Sbjct: 972 CHRCGAPESTTHLFFHCEFAAQVWEL 997
>At4g09710 RNA-directed DNA polymerase -like protein
Length = 1274
Score = 369 bits (946), Expect = e-102
Identities = 307/1057 (29%), Positives = 480/1057 (45%), Gaps = 83/1057 (7%)
Query: 34 FLKSNEEFYIFNMYAPCDRRAKQVLWNSLSSRLLSLGSSKVCVCGDFNTVRSVDERRS-- 91
+ K N E I AP + V W+ +SS L + SS + GDFN + E++
Sbjct: 37 YWKENVEVEILEA-APNFIDNRSVFWDKISS-LGAQRSSAWLLTGDFNDILDNSEKQGGP 94
Query: 92 VRGSQVVDDCAPFNDFIEDRVLINLPLCGRKFTWYNGDGRS---MSTLDRFLLSEEWCMV 148
+R F F+ L ++ G +W G S S LDR L + W +
Sbjct: 95 LRWEGFF---LAFRSFVSQNGLWDINHTGNSLSW-RGTRYSHFIKSRLDRALGNCSWSEL 150
Query: 149 WPTC-LQVAQLRGLSDHCPIVLTVDEKNWG-PRPVRLLKCWQDMPGYSDFVREKWGSFQV 206
+P + + G SDH P+V +P R + ++ V+E W +
Sbjct: 151 FPMSKCEYLRFEG-SDHRPLVTYFGAPPLKRSKPFRFDRRLREKEEIRALVKEVWELARQ 209
Query: 207 SGWGGFVLKEKLKLMKAALKEWHVANTLNLPSKIVSLKNRRAVLDSKGEEEELSEEELGE 266
+ K+ + ++ +W N I K + L+S + +G
Sbjct: 210 DS-----VLYKISRCRQSIIKWTKEQNSNSAKAI---KKAQQALESALSADIPDPSLIGS 261
Query: 267 LHGISSDIHSLSRLNTSICWQQSRLNWLRDGDANSKFFHSVLAARRRINSLSSILVDGV- 325
I+ ++ + R Q SR+ WL GD N +FH+ RR +N+LS ++ DG
Sbjct: 262 ---ITQELEAAYRQEELFWKQWSRVQWLNSGDRNKGYFHATTRTRRMLNNLS-VIEDGSG 317
Query: 326 --------VVEGVQPVRQAVFTHSKNHFLAPIMTRPSVGHLQFRKLSSVERGGLIKPFHE 377
+ + Q +FT S N L + S +SS LIK
Sbjct: 318 QEFHEEEQIASTISSYFQNIFTTSNNSDLQVVQEALSP------IISSHCNEELIKISSL 371
Query: 378 EEIKAAVWDCDSYKIPGPDGINLGFIKSFWHEMKAEIVRFVTEFHRNRKLSKGINSRFIA 437
EIK A++ + K PGPDG + F ++W ++A++ R + F + LS +N +
Sbjct: 372 LEIKEALFSISADKAPGPDGFSASFFHAYWDIIEADVSRDIRSFFVDSCLSPRLNETHVT 431
Query: 438 LIPKVASPQSLNEFRPISLVGSLYKILAKILANRLRQVIGSVVSEVQSAFVKNRQILDGI 497
LIPK+++P+ ++++RPI+L YKI+AKIL RL+ + ++S QSAFV R I D +
Sbjct: 432 LIPKISAPRKVSDYRPIALCNVQYKIVAKILTRRLQPWLSELISLHQSAFVPGRAIADNV 491
Query: 498 LITNEVVDEARKS---KKDLLLFKVDFEKAYDSVDWGYLDEVMGSMTFPTVW*KWIKECV 554
LIT+E++ R S K + K D KAYD + W +L EV+ + F W +W+ +CV
Sbjct: 492 LITHEILHFLRVSGAKKYCSMAIKTDMSKAYDRIKWNFLQEVLMRLGFHDKWIRWVMQCV 551
Query: 555 GTATASVLVNGCPTDEFFLERGLRQGDPLSPFLFLLAAEGLNVLMKALVDAGLFKGYSVG 614
T + S L+NG P RGLRQGDPLSP+LF+L E L+ L + + G+ G V
Sbjct: 552 CTVSYSFLINGSPQGSVVPSRGLRQGDPLSPYLFILCTEVLSGLCRKAQEKGVMVGIRVA 611
Query: 615 RADPVVVSHLQFADDTLLIGNKSWANVRALRAGLILLEAMSGLKVNFHKSSLVGVNITGS 674
R P V+HL FADDT+ + AL L E SG +N KS++ + T
Sbjct: 612 RGSP-QVNHLLFADDTMFFCKTNPTCCGALSNILKKYELASGQSINLAKSAITFSSKTPQ 670
Query: 675 WLSEAASVLGCKVGKIPFL--YLGLSIGGDPRRLLFWEPVVNRIKNRLSGWQSRFLSFGG 732
+ L ++ + YLGL R+ + +V+RI+ R W RFLS G
Sbjct: 671 DIKRRVK-LSLRIDNEGGIGKYLGLPEHFGRRKRDIFSSIVDRIRQRSHSWSIRFLSSAG 729
Query: 733 RLVLLKFVLTALPVYALSFFKAPSGIISSIESLFNKFFWGGGEDKRKISWIRWDTLSLRK 792
+ +LLK VL+++P YA+ FK P+ + I+S+ +F+W DKRK++W+ WD L+L
Sbjct: 730 KQILLKAVLSSMPSYAMMCFKLPASLCKQIQSVLTRFWWDSKPDKRKMAWVSWDKLTLPI 789
Query: 793 EYGGLGVTRLREFNLALLGKWCWRLLLEKEALWRKVLVARYGVADGGLEDGGRS--CSSW 850
GGLG + K WR+L E +L +VL+ +Y ++ S
Sbjct: 790 NEGGLGFREIE-------AKLSWRILKEPHSLLSRVLLGKYCNTSSFMDCSASPSFASHG 842
Query: 851 WREIVRIRDGIGEGGEGWFGSCVRRRVGDGAETDFWWDCWCGDVSLCERFSRLYDLTVNK 910
WR I+ RD + + G GW +G G + W + W S NK
Sbjct: 843 WRGILAGRDLLRK-GLGW-------SIGQGDSINVWTEAWLSPSSPQTPIGP--PTETNK 892
Query: 911 LISVRNMILLGVDVGG-EALRWRRRLWAWEEELVEEFXALLLTVSLQESVTDRWIWLPTQ 969
+SV ++I V EA+ R+ L +E+++ + + + LQ+S+ +WLP +
Sbjct: 893 DLSVHDLICHDVKSWNVEAI--RKHLPQYEDQIRK---ITINALPLQDSL----VWLPVK 943
Query: 970 DDGYSVRGAYDM--LTSQEQPHLHQNLEL-IWHTQVPLKVSILAWRLLRDRLPTKDNLAN 1026
Y+ + Y + L S L N + IW KV W+ ++ LP + L+
Sbjct: 944 SGEYTTKTGYALAKLNSFPASQLDFNWQKNIWKIHTSPKVKHFLWKAMKGALPVGEALSR 1003
Query: 1027 RGILPLEARMCVSSCGNEEDVNHLFLSCATFSALWPL 1063
R I EA + CG E HL L C +W L
Sbjct: 1004 RNI---EAEVTCKRCGQTESSLHLMLLCPYAKKVWEL 1037
>At4g10830 putative protein
Length = 1294
Score = 362 bits (930), Expect = e-100
Identities = 266/895 (29%), Positives = 444/895 (48%), Gaps = 43/895 (4%)
Query: 2 GASRGMVTIWDRVEVEVWSTVRGVHFLLIHGRFLKSNEEFYIFNMYAPCDRRAKQVLWNS 61
G S G+ +W + V + + + + +H +N FY+ +Y + + LW
Sbjct: 424 GHSGGLALLW-KDSVRLSNLYQDDRHIDVHISI--NNINFYLSRVYGHPCQSERHSLWTH 480
Query: 62 LSSRLLSLGSSKVCVCGDFNTVRSVDERRSVRGSQVVD-DCAPFNDFIEDRVLINLPLCG 120
+ L + + GDFN + S +E+ + G Q + F + + L ++ G
Sbjct: 481 FEN-LSKTRNDPWILIGDFNEILSNNEK--IGGPQRDEWTFRGFRNMVSTCDLKDIRSIG 537
Query: 121 RKFTWYNGDGRSMST---LDRFLLSEEWCMVWPTC-LQVAQLRGLSDHCPIVLTVDEKNW 176
+F+W G+ S + LDR ++ E ++P L+ + G SDH P+ L++++
Sbjct: 538 DRFSWV-GERHSHTVKCCLDRAFINSEGAFLFPFAELEFLEFTG-SDHKPLFLSLEKTET 595
Query: 177 GP-RPVRLLKCWQDMPGYSDFVREKWGSFQVSGWGGFVLKEKLKLMKAALKEWHVANTLN 235
RP R K ++P + +V+ W ++G L ++++ + A+ + + LN
Sbjct: 596 RKMRPFRFDKRLLEVPHFKTYVKAGWNK-AINGQRKH-LPDQVRTCRQAMAKLKHKSNLN 653
Query: 236 LPSKIVSLKNRRAVLDSKGEEEELSEEELGELHGISSDIHSLSRLNTSICWQQSRLNWLR 295
+I L+ A LD ++ E + I ++ R Q+SR W++
Sbjct: 654 SRIRINQLQ---AALDKA--MSSVNRTERRTISHIQRELTVAYRDEERYWQQKSRNQWMK 708
Query: 296 DGDANSKFFHSVLAARRRINSLSSIL-VDGVVVEGVQPV---RQAVFTHSKNHFLAPIMT 351
+GD N++FFH+ R +N L +I +G++ G + + Q FT P+
Sbjct: 709 EGDRNTEFFHACTKTRFSVNRLVTIKDEEGMIYRGDKEIGVHAQEFFTKVYESNGRPVSI 768
Query: 352 RPSVGHLQFRKLSSVE-RGGLIKPFHEEEIKAAVWDCDSYKIPGPDGINLGFIKSFWHEM 410
G F+ + + + L K + EI A+ K PGPDG+ F KS W +
Sbjct: 769 IDFAG---FKPIVTEQINDDLTKDLSDLEIYNAICHIGDDKAPGPDGLTARFYKSCWEIV 825
Query: 411 KAEIVRFVTEFHRNRKLSKGINSRFIALIPKVASPQSLNEFRPISLVGSLYKILAKILAN 470
++++ V F R + + IN I +IPK+ +P++L+++RPI+L LYKI++K L
Sbjct: 826 GPDVIKEVKIFFRTSYMKQSINHTNICMIPKITNPETLSDYRPIALCNVLYKIISKCLVE 885
Query: 471 RLRQVIGSVVSEVQSAFVKNRQILDGILITNEVVDEARKSKK---DLLLFKVDFEKAYDS 527
RL+ + ++VS+ Q+AF+ R + D ++I +E++ + K+ + K D KAYD
Sbjct: 886 RLKGHLDAIVSDSQAAFIPGRLVNDNVMIAHEMMHSLKTRKRVSQSYMAVKTDVSKAYDR 945
Query: 528 VDWGYLDEVMGSMTFPTVW*KWIKECVGTATASVLVNGCPTDEFFLERGLRQGDPLSPFL 587
V+W +L+ M F W KWI V + SVLVNG P +RG+RQGDPLSP+L
Sbjct: 946 VEWNFLETTMRLFGFSETWIKWIMGAVKSVNYSVLVNGIPHGTIQPQRGIRQGDPLSPYL 1005
Query: 588 FLLAAEGLNVLMKALVDAGLFKGYSVGRADPVVVSHLQFADDTLLIGNKSWANVRALRAG 647
F+L A+ LN L+K V G +G +G P V +HLQFADD+L + N +AL+
Sbjct: 1006 FILCADILNHLIKNRVAEGDIRGIRIGNGVPGV-THLQFADDSLFFCQSNVRNCQALKDV 1064
Query: 648 LILLEAMSGLKVNFHKSSLV-GVNITGSWLSEAASVLGCKVGKIPFLYLGLSIGGDPRRL 706
+ E SG K+N KS + G + G+ + ++LG + YLGL ++
Sbjct: 1065 FDVYEYYSGQKINMSKSMITFGSRVHGTTQNRLKNILGIQSHGGGGKYLGLPEQFGRKKR 1124
Query: 707 LFWEPVVNRIKNRLSGWQSRFLSFGGRLVLLKFVLTALPVYALSFFKAPSGIISSIESLF 766
+ ++ R+K R S W +++LS G+ ++LK V ++PVYA+S FK P I+S IE+L
Sbjct: 1125 DMFNYIIERVKKRTSSWSAKYLSPAGKEIMLKSVAMSMPVYAMSCFKLPLNIVSEIEALL 1184
Query: 767 NKFFWGGGEDKRKISWIRWDTLSLRKEYGGLGVTRLREFNLALLGKWCWRLLLEKEALWR 826
F+W KR+I WI W L K+ GGLG L +FN ALL K WR++ +L+
Sbjct: 1185 MNFWWEKNAKKREIPWIAWKRLQYSKKEGGLGFRDLAKFNDALLAKQVWRMINNPNSLFA 1244
Query: 827 KVLVARYGVADGGLEDGGRSCSSW-WREIVRIRDGIGEGGEGWFGSCVRRRVGDG 880
+++ ARY D L+ + S+ W ++ D I +G R VGDG
Sbjct: 1245 RIMKARYFREDSILDAKRQRYQSYGWTSMLAGLDVIKKGS--------RFIVGDG 1291
>At2g01840 putative non-LTR retroelement reverse transcriptase
Length = 1715
Score = 359 bits (922), Expect = 4e-99
Identities = 302/1094 (27%), Positives = 495/1094 (44%), Gaps = 102/1094 (9%)
Query: 2 GASRGMVTIWDR-VEVEVWS-TVRGVHFLLIHGRFLKSNEEFYIFNMYAPCDRRAKQVLW 59
G S G+V W + + ++V S VR V + + F FY+ +Y + LW
Sbjct: 425 GLSGGLVVYWKKHLSIQVISHDVRLVDLYVEYKNF-----NFYLSCIYGHPIPSERHHLW 479
Query: 60 NSLSSRLLSLGSSKVCVCGDFNTVRSVDERRSVRGSQVVDDCAPFNDFIEDRVLINLPLC 119
L R+ + S +CGDFN + +++E++ R + + F + I + +L
Sbjct: 480 EKLQ-RVSAHRSGPWMMCGDFNEILNLNEKKGGR-RRSIGSLQNFTNMINCCNMKDLKSK 537
Query: 120 GRKFTWYNGDGRSM--STLDRFLLSEEWCMVWPTC-LQVAQLRGLSDHCPIVLTVDEKNW 176
G ++W S LDR ++ +W +P + + G SDH P+++ + E+
Sbjct: 538 GNPYSWVGKRQNETIESCLDRVFINSDWQASFPAFETEFLPIAG-SDHAPVIIDIAEEVC 596
Query: 177 GPR-PVRLLKCWQDMPGYSDFVREKWGSFQVSGWGGFVLKEKLKLMKAALKEWHVANTLN 235
R R + + D V+ W + GG+ EKL + L +W N
Sbjct: 597 TKRGQFRYDRRHFQFEDFVDSVQRGWNRGRSDSHGGYY--EKLHCCRQELAKWKRRTKTN 654
Query: 236 LPSKIVSLKNRRAVLDSKGEEEELSEEELGELHGISSDIHSLSRLNTSICWQ-QSRLNWL 294
KI +LK R +D+ + L + + L D++ R + + W +SR W+
Sbjct: 655 TAEKIETLKYR---VDAAERDHTLPHQTILRLR---QDLNQAYR-DEELYWHLKSRNRWM 707
Query: 295 RDGDANSKFFHSVLAARRRINSLSSILVDGVVVEGVQPVRQAVFTHSKNHFLAPIMTRPS 354
GD N+ FF++ R+ N + +I +G++ R ++ A + T
Sbjct: 708 LLGDRNTMFFYASTKLRKSRNRIKAI----TDAQGIENFRDDTIGKVAENYFADLFTTTQ 763
Query: 355 VGHLQ------FRKLSSVERGGLIKPFHEEEIKAAVWDCDSYKIPGPDGINLGFIKSFWH 408
+ K++ L++ ++E++ AV+ + + PG DG F W
Sbjct: 764 TSDWEEIISGIAPKVTEQMNHELLQSVTDQEVRDAVFAIGADRAPGFDGFTAAFYHHLWD 823
Query: 409 EMKAEIVRFVTEFHRNRKLSKGINSRFIALIPKVASPQSLNEFRPISLVGSLYKILAKIL 468
+ ++ V F + + IN I LIPK+ P+ ++++RPISL + YKI++KIL
Sbjct: 824 LIGNDVCLMVRHFFESDVMDNQINQTQICLIPKIIDPKHMSDYRPISLCTASYKIISKIL 883
Query: 469 ANRLRQVIGSVVSEVQSAFVKNRQILDGILITNEV---VDEARKSKKDLLLFKVDFEKAY 525
RL+Q +G V+S+ Q+AFV + I D +L+ +E+ + R+ + + K D KAY
Sbjct: 884 IKRLKQCLGDVISDSQAAFVPGQNISDNVLVAHELLHSLKSRRECQSGYVAVKTDISKAY 943
Query: 526 DSVDWGYLDEVMGSMTFPTVW*KWIKECVGTATASVLVNGCPTDEFFLERGLRQGDPLSP 585
D V+W +L++VM + F W KWI CV + + VL+NG P + F RG+RQGDPLSP
Sbjct: 944 DRVEWNFLEKVMIQLGFAPRWVKWIMTCVTSVSYEVLINGSPYGKIFPSRGIRQGDPLSP 1003
Query: 586 FLFLLAAEGL-NVLMKALVDAGLFKGYSVGRADPVVVSHLQFADDTLLIGNKSWANVRAL 644
+LFL AE L N+L KA V+ + G + + D + +SHL FADD+L S N+ L
Sbjct: 1004 YLFLFCAEVLSNMLRKAEVNKQI-HGMKITK-DCLAISHLLFADDSLFFCRASNQNIEQL 1061
Query: 645 RAGLILLEAMSGLKVNFHKSSLV-GVNITGSWLSEAASVLGCKVGKIPFLYLGLSIGGDP 703
E SG K+N+ KSS++ G I +LG + YLGL
Sbjct: 1062 ALIFKKYEEASGQKINYAKSSIIFGQKIPTMRRQRLHRLLGIDNVRGGGKYLGLPEQLGR 1121
Query: 704 RRLLFWEPVVNRIKNRLSGWQSRFLSFGGRLVLLKFVLTALPVYALSFFKAPSGIISSIE 763
R++ +E +V ++K R GW +LS G+ +++K + ALPVY+++ F P+ I + I
Sbjct: 1122 RKVELFEYIVTKVKERTEGWAYNYLSPAGKEIVIKAIAMALPVYSMNCFLLPTLICNEIN 1181
Query: 764 SLFNKFFWGGGEDKRKISWIRWDTLSLRKEYGGLGVTRLREFNLALLGKWCWRLLLEKEA 823
SL F+WG ++ G LG L +FN ALL K WR+L ++
Sbjct: 1182 SLITAFWWG------------------KENEGDLGFKDLHQFNRALLAKQAWRILTNPQS 1223
Query: 824 LWRKVLVARYGVADGGLE-DGGRSCSSWWREIVRIRDGIGEGGEGWFGSCVRRRVGDGAE 882
L ++ Y L + G S W I + G+ +R R+GDG
Sbjct: 1224 LLARLYKGLYYPNTTYLRANKGGHASYGWNSI--------QEGKLLLQQGLRVRLGDGQT 1275
Query: 883 TDFWWDCWCGDVSLCERFSRLYDLTVNKLISVRNMILLGVDVGGEALRWRRRLWAWEEEL 942
T W D W +L R +R L + + A WR W+ +
Sbjct: 1276 TKIWEDPWL--PTLPPRPARGPILDEDMKV---------------ADLWRENKREWDPVI 1318
Query: 943 VE-----EFXALLLTVSLQE-SVTDRWIWLPTQDDGYSVRGAYDM-----LTSQEQPH-L 990
E E L ++ L + D + W T++ Y+VR Y + LT +E + L
Sbjct: 1319 FEGVLNPEDQQLAKSLYLSNYAARDSYKWAYTRNTQYTVRSGYWVATHVNLTEEEIINPL 1378
Query: 991 HQNLEL---IWHTQVPLKVSILAWRLLRDRLPTKDNLANRGILPLEARMCVSSCGNEEDV 1047
++ L IW ++ K+ WR L L T L NR I P + C C +E +
Sbjct: 1379 EGDVPLKQEIWRLKITPKIKHFIWRCLSGALSTTTQLRNRNI-PADP-TCQRCCNADETI 1436
Query: 1048 NHLFLSCATFSALW 1061
NH+ +C+ +W
Sbjct: 1437 NHIIFTCSYAQVVW 1450
>At2g41580 putative non-LTR retroelement reverse transcriptase
Length = 1094
Score = 343 bits (881), Expect = 2e-94
Identities = 253/863 (29%), Positives = 405/863 (46%), Gaps = 52/863 (6%)
Query: 222 KAALKEWHVANTLNLPSKIVSLKNRRAVLDSKGEEEELSEEELGELHGISSDIHSLSRLN 281
+ A+ +W N N S+I L+ LD + S ++ L + D + R
Sbjct: 8 RKAISQWKRENDFNAKSRITKLRRE---LDKEKSATFPSWTQISLLQDVLGDAY---REE 61
Query: 282 TSICWQQSRLNWLRDGDANSKFFHSVLAARRRINSLSSILVDGVVVEGVQPVRQAV-FTH 340
+SR W+ GD NSKFF + + A R NSL ++ + + V + + T
Sbjct: 62 EDFWRLKSRDKWMVGGDKNSKFFQATVKANRVSNSLRFLVDENGNEQTVNREKGKIAVTF 121
Query: 341 SKNHFLAPI-MTRPSVGHLQFRKLSSVERGGLIKPFHEEEIKAAVWDCDSYKIPGPDGIN 399
++ F + + SV ++++ L K +E+EI AV+ ++ PGPDG
Sbjct: 122 FEDLFSSSYPSSMDSVLEGFNKRVTEDMNQDLTKKVNEQEIYKAVFSINAESAPGPDGFT 181
Query: 400 LGFIKSFWHEMKAEIVRFVTEFHRNRKLSKGINSRFIALIPKVASPQSLNEFRPISLVGS 459
F + W +K +I+ + F + L + N + LIPK+ P + + RPISL
Sbjct: 182 ALFFQRQWPLVKNQIISDIELFFQTGILPEDWNHTHLCLIPKITKPARMADIRPISLCSV 241
Query: 460 LYKILAKILANRLRQVIGSVVSEVQSAFVKNRQILDGILITNEVVDEAR---KSKKDLLL 516
+YKI++KIL+ RL++ + +VS QSAFV R + D I++ +E+V R K KD ++
Sbjct: 242 MYKIISKILSARLKKYLPVIVSPTQSAFVAERLVSDNIILAHEIVHNLRTNEKISKDFMV 301
Query: 517 FKVDFEKAYDSVDWGYLDEVMGSMTFPTVW*KWIKECVGTATASVLVNGCPTDEFFLERG 576
FK D KAYD V+W +L ++ ++ F + W W+ CV + + SVL+NG P RG
Sbjct: 302 FKTDMSKAYDRVEWPFLKGILLALGFNSTWINWMMACVSSVSYSVLINGQPFGHITPHRG 361
Query: 577 LRQGDPLSPFLFLLAAEGLNVLMKALVDAGLFKGYSVGRADPVVVSHLQFADDTLLIGNK 636
LRQGDPLSPFLF+L E L ++ G G P V+HL FADDTLLI
Sbjct: 362 LRQGDPLSPFLFVLCTEALIHILNQAEKIGKISGIQFNGTGP-SVNHLLFADDTLLICKA 420
Query: 637 SWANVRALRAGLILLEAMSGLKVNFHKSSLV-GVNI---TGSWLSEAASV-LGCKVGKIP 691
S + L +SG +N KS++ G + T W+ + + GK
Sbjct: 421 SQLECAEIMHCLSQYGHISGQMINSEKSAITFGAKVNEETKQWIMNRSGIQTEGGTGK-- 478
Query: 692 FLYLGLSIGGDPRRLLFWEPVVNRIKNRLSGWQSRFLSFGGRLVLLKFVLTALPVYALSF 751
YLGL + + + + ++++RLSGW ++ LS GG+ +LLK + A PVYA++
Sbjct: 479 --YLGLPECFQGSKQVLFGFIKEKLQSRLSGWYAKTLSQGGKDILLKSIAMAFPVYAMTC 536
Query: 752 FKAPSGIISSIESLFNKFFWGGGEDKRKISWIRWDTLSLRKEYGGLGVTRLREFNLALLG 811
F+ + + + S+ F+W +DK+KI WI L L K GG G L+ FN ALL
Sbjct: 537 FRLSKTLCTKLTSVMMDFWWNSVQDKKKIHWIGAQKLMLPKFLGGFGFKDLQCFNQALLA 596
Query: 812 KWCWRLLLEKEALWRKVLVARYGVADGGLE-DGGRSCSSWWREIVRIRDGIGEGGEGWFG 870
K RL + ++L ++L +RY + L G S W+ I+ R+ + G
Sbjct: 597 KQASRLHTDSDSLLSQILKSRYYMNSDFLSATKGTRPSYAWQSILYGRELLVSG------ 650
Query: 871 SCVRRRVGDGAETDFWWDCWCGDVSLCERFSRLYDLTVNKLISVRNMILLGVDVGGEALR 930
+++ +G+G T W D W D ++ R L + I ++ L+ L
Sbjct: 651 --LKKIIGNGENTYVWMDNWIFD----DKPRRPESLQIMVDIQLKVSQLIDPFSRNWNLN 704
Query: 931 WRRRLWAWEEELVEEFXALLLTVSLQESVTDRWIWLPTQDDGYSVRGAYDMLTSQ----- 985
R L+ W+E ++ S D + W T Y+V+ YD+ + Q
Sbjct: 705 MLRDLFPWKE------IQIICQQRPMASRQDSFCWFGTNHGLYTVKSEYDLCSRQVHKQM 758
Query: 986 -----EQPHLHQNLELIWHTQVPLKVSILAWRLLRDRLPTKDNLANRGILPLEARMCVSS 1040
EQP L+ IW+ K+ + W++L+ + +D L RG+L + C
Sbjct: 759 FKEAEEQPSLNPLFGKIWNLNSAPKIKVFLWKVLKGAVAVEDRLRTRGVLIEDG--CSMC 816
Query: 1041 CGNEEDVNHLFLSCATFSALWPL 1063
E +NH+ C +W L
Sbjct: 817 PEKNETLNHILFQCPLARQVWAL 839
>At3g45550 putative protein
Length = 851
Score = 334 bits (856), Expect = 2e-91
Identities = 228/735 (31%), Positives = 360/735 (48%), Gaps = 36/735 (4%)
Query: 363 LSSVERGGLIKPFHEEEIKAAVWDCDSYKIPGPDGINLGFIKSFWHEMKAEIVRFVTEFH 422
++++ L + F + EI A+ K PGPDG+ F K W + ++++ V F
Sbjct: 37 VTNIINSELTQDFRDSEIFEAICQIGDDKAPGPDGLTARFYKQCWDIVGNDVIKEVKLFF 96
Query: 423 RNRKLSKGINSRFIALIPKVASPQSLNEFRPISLVGSLYKILAKILANRLRQVIGSVVSE 482
+ + +N I +IPK+ +PQ+L+++RPI+L LYK+++K + NRL+ + S+VS+
Sbjct: 97 ESSHMKTSVNHTNICMIPKIQNPQTLSDYRPIALCNVLYKVISKCMVNRLKAHLNSIVSD 156
Query: 483 VQSAFVKNRQILDGILITNEVVDEARKSK---KDLLLFKVDFEKAYDSVDWGYLDEVMGS 539
Q+AF+ R I D ++I +E++ + K K + K D KAYD V+W +L+ M
Sbjct: 157 SQAAFIPGRIINDNVMIAHEIMHSLKVRKRVSKTYMAVKTDVSKAYDRVEWDFLETTMRL 216
Query: 540 MTFPTVW*KWIKECVGTATASVLVNGCPTDEFFLERGLRQGDPLSPFLFLLAAEGLNVLM 599
F W WI V + SVL+NG P RG+RQGDPLSP+LF+L + L+ L+
Sbjct: 217 FGFCDKWIGWIMAAVKSVHYSVLINGSPHGYISPTRGIRQGDPLSPYLFILCGDILSHLI 276
Query: 600 KALVDAGLFKGYSVGRADPVVVSHLQFADDTLLIGNKSWANVRALRAGLILLEAMSGLKV 659
K +G +G +G P + +HLQFADD+L + N +AL+ + E SG K+
Sbjct: 277 KVKASSGDIRGVRIGNGAPAI-THLQFADDSLFFCQANVRNCQALKDVFDVYEYYSGQKI 335
Query: 660 NFHKSSLV-GVNITGSWLSEAASVLGCKVGKIPFLYLGLSIGGDPRRLLFWEPVVNRIKN 718
N KS + G + GS + ++L YLGL ++ + +++R+K
Sbjct: 336 NVQKSLITFGSRVYGSTQTRLKTLLNIPNQGGGGKYLGLPEQFGRKKKEMFNYIIDRVKE 395
Query: 719 RLSGWQSRFLSFGGRLVLLKFVLTALPVYALSFFKAPSGIISSIESLFNKFFWGGGEDKR 778
R + W ++FLS G+ +LLK V A+PVYA+S FK P GI+S IESL F+W +KR
Sbjct: 396 RTASWSAKFLSPAGKEILLKSVALAMPVYAMSCFKLPQGIVSEIESLLMNFWWEKASNKR 455
Query: 779 KISWIRWDTLSLRKEYGGLGVTRLREFNLALLGKWCWRLLLEKEALWRKVLVARYGVADG 838
I W+ W L K+ GGLG L +FN ALL K WR++ +L+ +V+ ARY +
Sbjct: 456 GIPWVAWKRLQYSKKEGGLGFRDLAKFNDALLAKQAWRIIQYPNSLFARVMKARYFKDNS 515
Query: 839 GLEDGGRSCSSW-WREIVRIRDGIGEGGEGWFGSCVRRRVGDGAETDFWWDCWCGDVSLC 897
++ RS S+ W ++ GI +G R +GDG D V
Sbjct: 516 IIDAKTRSQQSYGWSSLL---SGIALLRKG-----TRYVIGDGKTIRLGID---NVVDSH 564
Query: 898 ERFSRLYDLTVNKLISVRNMILLGVDVGGEALRW-RRRLWAWEEELVEEFXALLLTVSLQ 956
L D N L S+ N+ G + W +L + ++ ++ + +
Sbjct: 565 PPRPLLTDEQHNGL-SLDNLF----QHRGHSRCWDNAKLQTFVDQSDHDYIKRIYLST-- 617
Query: 957 ESVTDRWIWLPTQDDGYSVRGAY--------DMLTSQEQPHLHQNLEL-IWHTQVPLKVS 1007
S TDR IW Y+VR Y + + + +PH +L+ IW+ + K+
Sbjct: 618 RSKTDRLIWSYNSTGDYTVRSGYWLSTHDPSNTIPTMAKPHGSVDLKTKIWNLPIMPKLK 677
Query: 1008 ILAWRLLRDRLPTKDNLANRGILPLEARMCVSSCGNEEDVNHLFLSCATFSALWPLVQAW 1067
WR+L LPT D L RG+ C E +NH +C + W L
Sbjct: 678 HFLWRILSKALPTTDRLTTRGMRIDPG--CPRCRRENESINHALFTCPFATMAWRLSDTP 735
Query: 1068 LGVVGVDSQSTSDHL 1082
L + S + D++
Sbjct: 736 LYRSSILSNNIEDNI 750
>At4g15590 reverse transcriptase like protein
Length = 929
Score = 331 bits (849), Expect = 1e-90
Identities = 271/946 (28%), Positives = 425/946 (44%), Gaps = 104/946 (10%)
Query: 120 GRKFTWYNGDGRSM---STLDRFLLSEEWCMVWPTCLQVAQLRGLSDHCPIVLTVDEKNW 176
G +FTW G S LDR L + W L CP VD +
Sbjct: 5 GNRFTWRRGLVESTFVAKRLDRVLFCAHARLKWQEALL----------CP-AQNVDARR- 52
Query: 177 GPRPVRLLKCWQDMPGYSDFVREKWGSFQVSGWGGFVLKEKLKLMKAALKEWHVANTLNL 236
RP R W G+ + + W + G L ++ LK+W+ N+
Sbjct: 53 --RPFRFEAAWLSHEGFKELLTASWDT-------GLSTPVALNRLRWQLKKWNKEVFGNI 103
Query: 237 ---PSKIVS-LKNRRAVLDSKGEEEELSEEELGELHGISSDIHSLSRLNTSICWQQSRLN 292
K+VS LK + +L+ ++ L +E+ + + L ++ +Q+SR
Sbjct: 104 HVRKEKVVSDLKAVQDLLEVVQTDDLLMKEDT-----LLKEFDVLLHQEETLWFQKSREK 158
Query: 293 WLRDGDANSKFFHSVLAARRRINSLSSIL--VDGVVVEGVQPVRQAVFTHSKNHFLAPIM 350
L GD N+ FFH+ RRR N + + D V E + A+ + K + L +
Sbjct: 159 LLALGDRNTTFFHTSTVIRRRRNRIEMLKDSEDRWVTEKEALEKLAMDYYRKLYSLEDVS 218
Query: 351 ----TRPSVGHLQFRKLSSVERGGLIKPFHEEEIKAAVWDCDSYKIPGPDGINLGFIKSF 406
T P+ G F +L+ E+ L +PF +E+ AV +K PGPDG F +
Sbjct: 219 VVRGTLPTEG---FPRLTREEKNNLNRPFTRDEVVVAVRSMGRFKAPGPDGYQPVFYQQC 275
Query: 407 WHEMKAEIVRFVTEFHRNRKLSKGINSRFIALIPKVASPQSLNEFRPISLVGSLYKILAK 466
W + + +FV EF + L K N + L+ KVA P+ + +FRP+SL L+KI+ K
Sbjct: 276 WETVGESVSKFVMEFFESGVLPKSTNDVLLVLLAKVAKPERITQFRPVSLCNVLFKIITK 335
Query: 467 ILANRLRQVIGSVVSEVQSAFVKNRQILDGILITNEVVDEAR--KSKKDLLLFKVDFEKA 524
++ RL+ VI ++ Q++F+ R D I++ E V R K +K +L K+D EKA
Sbjct: 336 MMVIRLKNVISKLIGPAQASFIPGRLSFDNIVVVQEAVHSMRRKKGRKGWMLLKLDLEKA 395
Query: 525 YDSVDWGYLDEVMGSMTFPTVW*KWIKECVGTATASVLVNGCPTDEFFLERGLRQGDPLS 584
YD + W +L E + + W K I ECV S+L NG TD F ERGLRQGDP+S
Sbjct: 396 YDRIRWDFLAETLEAAGLSEGWIKRIMECVAGPEMSLLWNGEKTDSFTPERGLRQGDPIS 455
Query: 585 PFLFLLAAEGLNVLMKALVDAGLFKGYSVGRADPVVVSHLQFADDTLLIGNKSWANVRAL 644
P+LF+L E L ++ V G +K S+ + P VSH+ FADD +L S A +L
Sbjct: 456 PYLFVLCIERLCHQIETAVGRGDWKSISISQGGP-KVSHVCFADDLILFAEASVAQKVSL 514
Query: 645 RAGLILLEAMSGLKVNFHKSSLVGVNITGSWLSEAASVLGCKVGKIPFLYLGLSIGGDPR 704
I S+ V ++ G +E ++GK YLG+ +
Sbjct: 515 EKSKIFF------------SNNVSRDLEGLITAETGIGSTRELGK----YLGMPVLQKRI 558
Query: 705 RLLFWEPVVNRIKNRLSGWQSRFLSFGGRLVLLKFVLTALPVYALSFFKAPSGIISSIES 764
+ V+ R+ +RLSGW+SR LS GR+ L K VL ++P++ +S P+ ++ ++
Sbjct: 559 NKDTFGEVLERVSSRLSGWKSRSLSLAGRITLTKAVLMSIPIHTMSSILLPASLLEQLDK 618
Query: 765 LFNKFFWGGGEDKRKISWIRWDTLSLRKEYGGLGVTRLREFNLALLGKWCWRLLLEKEAL 824
+ F WG +KRK + W + K GGLG+ ++ N ALL K WRLL +K +L
Sbjct: 619 VSRNFLWGSTVEKRKQHLLSWKKVCRPKAAGGLGLRASKDMNRALLAKVGWRLLNDKVSL 678
Query: 825 WRKVLVARYGVADGGLEDGG-----RSCSSWWREI-VRIRDGIGEGGEGWFGSCVRRRVG 878
W +VL +Y V D + D + SS WR I V +R+G+ +G
Sbjct: 679 WARVLRRKYKVTD--VHDSSWLVPKATWSSTWRSIGVGLREGVAKG-------------- 722
Query: 879 DGAETDFWWDCWCGDVSLCERFSRLYDLTVNKLISVRNMILLGVDVGGEALRWRRRLWAW 938
W LC R + L + ++ R VG + ++ + L
Sbjct: 723 -----------WILHEPLCTRATCLLS---PEELNARVEEFWTEGVGWDMVKLGQCL--- 765
Query: 939 EEELVEEFXALLLTVSLQESVTDRWIWLPTQDDGYSVRGAYDMLTSQEQ--PHLHQNLEL 996
+ + A+++ L + DR W T D ++V AY +LT +E+ P + +
Sbjct: 766 PRSVTDRLHAVVIKGVL--GLRDRISWQGTSDGDFTVGSAYVLLTQEEESKPCMESFFKR 823
Query: 997 IWHTQVPLKVSILAWRLLRDRLPTKDNLANRGILPLEARMCVSSCG 1042
IW P +V + W + + + T R I +E + S G
Sbjct: 824 IWGVIAPERVRVFLWLVGQQVIMTNVERVRRHIGDIEVCQRLPSHG 869
>At1g31100 hypothetical protein
Length = 1090
Score = 330 bits (845), Expect = 4e-90
Identities = 272/1052 (25%), Positives = 455/1052 (42%), Gaps = 83/1052 (7%)
Query: 34 FLKSNEEFYIFNMYAPCDRRAKQVLWNSLSSRLLSL-GSSKVCVC-GDFNTVRSVDERRS 91
F S++ + +YA + ++ LW L +SL G+ K + GDFN V E
Sbjct: 8 FPDSDDSVVVSIVYAANEAITRKELWEELLLLSVSLSGNGKPWIMLGDFNQVLCPAEHSQ 67
Query: 92 VRGSQVVDDCAPFNDFIEDRVLINLPLCGRKFTWYNGDGRS--MSTLDRFLLSEEWCMVW 149
V F D + + L +L G FTW+N LDR L++E WC +
Sbjct: 68 ATSLNVNRRMKVFRDCLFEAELCDLVFKGNTFTWWNKSATRPVAKKLDRILVNESWCSRF 127
Query: 150 PTCLQVAQLRGLSDHCPIVLTVDE-KNWGPRPVRLLKCWQDMPGYSDFVREKWGSFQVSG 208
P+ V SDH + ++ + RP R P + V E W S V G
Sbjct: 128 PSAYAVFGEPDFSDHASCGVIINPLMHREKRPFRFYNFLLQNPDFISLVGELWYSINVVG 187
Query: 209 WGGFVLKEKLKLMKAALKEWHVANTLNLPSKIVSLKNRRAVLDSKGEEEELSEEELGELH 268
F + +KLK +K ++ + + N NL ++ N +K + E+
Sbjct: 188 SSMFKMSKKLKALKNPIRTFSMENFSNLEKRVKEAHNLVLYRQNKTLSDPTIPNAALEME 247
Query: 269 GISSDIHSLSRLNTSICWQQSRLNWLRDGDANSKFFHSVLAARRRINSLSSILVD-GVVV 327
+ + + C Q+SR+ W+ +GD+N+ +FH + +R+ +N++ I+ D GV +
Sbjct: 248 AQRKWLILVKAEESFFC-QRSRVTWMGEGDSNTSYFHRMADSRKAVNTIHIIIDDNGVKI 306
Query: 328 EGVQPVRQAVFTHSKN----HFLAPIMTRPSVGHLQFRKLSSVERGGLIKPFHEEEIKAA 383
+ +++ + N P++ + L + S ++ L F ++IK+A
Sbjct: 307 DTQLGIKEHCIEYFSNLLGGEVGPPMLIQEDFDLLLPFRCSHDQKKELAMSFSRQDIKSA 366
Query: 384 VWDCDSYKIPGPDGINLGFIKSFWHEMKAEIVRFVTEFHRNRKLSKGINSRFIALIPKVA 443
+ S K GPDG + F K W + E+ V+EF + L K N+ + LIPK+
Sbjct: 367 FFSFPSNKTSGPDGFPVEFFKETWSVIGTEVTDAVSEFFTSSVLLKQWNATTLVLIPKIT 426
Query: 444 SPQSLNEFRPISLVG----SLYKILAKILANRLRQVIGSVVSEVQSAFVKNRQILDGILI 499
+ +N+FRPIS +LYK++A++L NRL+ ++ V+S QSAF+ R + + +L+
Sbjct: 427 NASKMNDFRPISCNDFGPITLYKVIARLLTNRLQCLLSQVISPFQSAFLPGRFLAENVLL 486
Query: 500 TNEVVDEARKSKKDLL-LFKVDFEKAYDSVDWGYLDEVMGSMTFPTVW*KWIKECVGTAT 558
E+V + D + KVD KA+DS+ W ++ + ++ P + WI +C+ T T
Sbjct: 487 ATELVQGYNRQNIDPRGMLKVDLRKAFDSIRWDFIISALKAIGIPDRFVYWITQCISTPT 546
Query: 559 ASVLVNGCPTDEFFLERGLRQGDPLSPFLFLLAAEGLNVLMKALVDAGLFKGYSVGRADP 618
SV VNG F RGLRQG+PLSPFLF+LA E + L+ + AG + + P
Sbjct: 547 FSVCVNGNTGGFFKSTRGLRQGNPLSPFLFVLAMEVFSSLLNSRFQAGYIHYHP--KTSP 604
Query: 619 VVVSHLQFADDTLLIGNKSWANVRALRAGLILLEAMSGLKVNFHKSSLVGVNITGSWLSE 678
+ +SHL FADD ++ + +++ + L SGL +N K+ L + G E
Sbjct: 605 LSISHLMFADDIMVFFDGGSSSLHGISEALEDFAFWSGLVLNREKTHLY---LAGLDRIE 661
Query: 679 AASVLGCKVGKIPFLYLGLSIGGDPRRLLFWEPVVNRIKNRLSGWQSRFLSFGGRLVLLK 738
A+++ R+ + P++ ++ R W + LSF GR+ L+
Sbjct: 662 ASTI------------------ARKLRIAEYGPLLEKLAKRFRSWSVKCLSFAGRVQLIA 703
Query: 739 FVLTALPVYALSFFKAPSGIISSIESLFNKFFWGGGEDKRKISWIRWDTLSLRKEYGGLG 798
V++ + + +S F P G + IE+L +F W G D +K + + W + L KE GG G
Sbjct: 704 SVISGIINFWISTFILPKGCVKRIEALCARFLWSGNIDVKKGAKVAWSEVCLPKEEGGSG 763
Query: 799 VTRLREFNLALLGKWCWRLLLEKEALWRKVLVARYGVADGGLEDGGRSCSSW-WREIVRI 857
EKE+LW E + SW WR ++R+
Sbjct: 764 Y-----------------YFSEKESLWAAWHKFHNFRNKSFWEIDESATDSWTWRSLLRL 806
Query: 858 RDGIGEGGEGWFGSCVRRRVGDGAETDFWWDCWCGDVSLCERFSRLYDLTVNKLISVRNM 917
R G + +GDG + FW+D W L + F + I +
Sbjct: 807 RTVAGR--------FLFSVLGDGKKISFWFDNWSPLGPLFKLFGSSGPRALCIPIQAKVA 858
Query: 918 ILLGVDVGGEALRWRRRLWAWEEELVEEFXALLL---TVSLQ--ESVTDRWIWLPTQDDG 972
DVG W ++ ALL+ T++L +S D ++W+
Sbjct: 859 DACS-DVG----------WLISPPRTDQALALLIHLTTIALPCFDSSPDTFVWIVDDFTC 907
Query: 973 YSVRGAYDMLTSQEQPHLHQNLELIWHTQVPLKVSILAWRLLRDRLPTKDNLANRGILPL 1032
+ A + + + + +W K + W +RLPT+ LA G+
Sbjct: 908 HGFSAARTWEAMRPKKPVKDWTKSVWFKGSVPKHAFNMWVSHLNRLPTRQRLAAWGV--T 965
Query: 1033 EARMCVSSCGNEEDVNHLFLSCATFSALWPLV 1064
C E +HL L C + +W LV
Sbjct: 966 TTTDCCLCSSRPESRDHLLLYCVFSAVIWKLV 997
>At2g23880 putative non-LTR retroelement reverse transcriptase
Length = 1216
Score = 320 bits (820), Expect = 3e-87
Identities = 244/824 (29%), Positives = 383/824 (45%), Gaps = 66/824 (8%)
Query: 297 GDANSKFFHSVLAARRRINSLSSILV-DGVVVEGVQPVRQAVFTHSKNHFLAPIMTRPS- 354
GD N+K FH + R +NS+ I+ DG+VV Q ++ T + N+F + T P+
Sbjct: 90 GDRNNKTFHRAITTREAVNSIREIVTRDGLVVTSQQDIQ----TEAVNYFQDFLQTIPAD 145
Query: 355 --------VGHLQFRKLSSVERGGLIKPFHEEEIKAAVWDCDSYKIPGPDGINLGFIKSF 406
+ +L + S + L + EEIK ++ K PGPDG F K+
Sbjct: 146 YEGMCVEELENLLPFRCSEDDHRLLTRVVTGEEIKKVIFSMPKDKSPGPDGYTSEFYKAS 205
Query: 407 WHEMKAEIVRFVTEFHRNRKLSKGINSRFIALIPKVASPQSLNEFRPISLVGSLYKILAK 466
W + E++ + F L KG+NS +ALIPK + + ++RPIS LYK ++K
Sbjct: 206 WEIIGDEVIIAIQSFFAKGFLPKGVNSTILALIPKKKEAREIKDYRPISCCNVLYKAISK 265
Query: 467 ILANRLRQVIGSVVSEVQSAFVKNRQILDGILITNEVVDEARK-SKKDLLLFKVDFEKAY 525
ILANRL++++ + QSAFVK+R +++ +L+ E+V + K S K+D KA+
Sbjct: 266 ILANRLKRILPKFIVGNQSAFVKDRLLIENVLLATELVKDYHKDSISTRCAMKIDISKAF 325
Query: 526 DSVDWGYLDEVMGSMTFPTVW*KWIKECVGTATASVLVNGCPTDEFFLERGLRQGDPLSP 585
DS+ W +L V+ +M FP + WI C+ TA+ S+ VNG F RGLRQG LSP
Sbjct: 326 DSLQWSFLTHVLAAMNFPGEFIHWISLCMSTASFSIQVNGELAGYFRSARGLRQGCSLSP 385
Query: 586 FLFLLAAEGLNVLMKALVDAGLFKGYSVGRADPVVVSHLQFADDTLLIGNKSWANVRALR 645
+LF+++ + L+ ++ A F GY R + ++HL FADD +++ + +V +
Sbjct: 386 YLFVISMDVLSRMLDKAAGAREF-GYH-PRCKTLGLTHLCFADDLMILTDGKIRSVDGIV 443
Query: 646 AGLILLEAMSGLKVNFHKSSLVGVNITGSWLSEAASVLGCKVGKIPFLYLGLSIGGDPRR 705
L A GLK+ K++L ++ +S VGK+P YLGL +
Sbjct: 444 KVLNQFAAKLGLKICMEKTTLYLAGVSDHSRQLMSSRYSFGVGKLPVRYLGLPLVTKRLT 503
Query: 706 LLFWEPVVNRIKNRLSGWQSRFLSFGGRLVLLKFVLTALPVYALSFFKAPSGIISSIESL 765
+ P++++I+ R+ W SR+LSF GRL L+ VL ++ + ++ F+ P I+ I +
Sbjct: 504 TSDYSPLIDQIRRRIGMWTSRYLSFAGRLSLINSVLWSITNFWMNAFRLPRECINEINRI 563
Query: 766 FNKFFWGGGEDKRKISWIRWDTLSLRKEYGGLGVTRLREFNLALLGKWCWRLLLEKEALW 825
+ W G E K + + WD + K+ GGLG+ LRE N K WRLL +++LW
Sbjct: 564 SSALLWSGPELNPKKAKVSWDEICKPKKEGGLGLQSLREANKVSSLKLIWRLLSCQDSLW 623
Query: 826 RKVLVARYGVADGGLEDGGRS-CSSW-WREIVRIRDGIGEGGEGWFGSCVRRRVGDGAET 883
K + G S SW WR +++ R+ S + V +G T
Sbjct: 624 VKWTRMNLLKKESFWSIGTHSTLGSWIWRRLLKHREVA--------KSFCKIEVNNGVNT 675
Query: 884 DFWWDCWCGDVSLCERFSRLYDLTVNKLISVRNMILLGVDVGGE-ALRW-RRRLWAWEEE 941
FW+D W L L R I +G+ A W RRR E
Sbjct: 676 SFWFDNWSEKGPLI------------NLTGARGAIDMGISRHMTLAEAWSRRRRKRHRVE 723
Query: 942 LVEEFXALLLTVSLQESV--TDRWIWLPTQD---DGYSVRGAYDML-TSQEQPHLHQNLE 995
++ EF +LL ++ D +W +D +S + ++ + TS Q H+
Sbjct: 724 ILNEFEEILLQKYQHRNIELEDAILWRGKEDVFKARFSTKDTWNHIRTSSNQRAWHKG-- 781
Query: 996 LIWHTQVPLKVSILAWRLLRDRLPTKDNLA--NRGILPLEARMCVSSCGNEEDVNHLFLS 1053
+W K S AW +R+RL T D + N G CV E +HLF
Sbjct: 782 -VWFAHATPKFSFCAWLAIRNRLSTGDRMMTWNNG----TPTTCVFCSSPMETRDHLFFQ 836
Query: 1054 CATFSALWPLV----------QAWLGVVGVDSQSTSDHLVQFIN 1087
C S +W + W VV S S D + F++
Sbjct: 837 CCYSSEIWTSIAKNVYKDRFSTKWSAVVNYISDSQPDRIQSFLS 880
>At2g11240 pseudogene
Length = 1044
Score = 318 bits (814), Expect = 1e-86
Identities = 233/774 (30%), Positives = 371/774 (47%), Gaps = 58/774 (7%)
Query: 136 LDRFLLSEEWCMVWPTCLQVAQLRGLSDHCPIVLTVDEKNWGPRPV-RLLKCWQDMPGYS 194
LDR L + W +P + SDH P++ D + V R + ++ +
Sbjct: 31 LDRALSNGAWAEDYPASRCIYLCFEGSDHRPLLTHFDLSKKKKKGVFRYDRRLKNNDEVT 90
Query: 195 DFVREKWGSFQVSGWGGFVLKEKLKLMKAALKEWHVANTLNLPSKIVSLKNRRAVLDSKG 254
V+E W + +++EK+ + + +W A + S+ + +NR+ + ++
Sbjct: 91 ALVQEAWNLYDTD-----IVEEKISRCRLEIVKWSRAKQQS--SQKLIEENRQKLEEAMS 143
Query: 255 EEEELSEEELGELHGISSDIHSLSRLNTSICWQQSRLNWLRDGDANSKFFHSVLAARRRI 314
++ +EL L I++++ + Q+SR WL GD NS +FH++ R I
Sbjct: 144 SQDH--NQEL--LSTINTNLLLAYKAEEEYWKQRSRQLWLALGDKNSGYFHAITRGRTVI 199
Query: 315 NSLSSILVDGVVVEGVQPVRQAVFTHSKNHFLAPIMTRPSVGHLQFRKLSSVERGG---- 370
N S I + +GV +A + + + F+KL S G
Sbjct: 200 NKFSVIEKE----DGVPEYEEAGILNVISEY--------------FQKLFSANEGARAAT 241
Query: 371 ---LIKPF-----HEEEIKAAVWDCDSYKIPGPDGINLGFIKSFWHEMKAEIVRFVTEFH 422
IKPF + EEIK+A + + K PGPDG + F +S W + IV + F
Sbjct: 242 IKEAIKPFISPEQNPEEIKSACFSIHADKAPGPDGFSASFFQSNWMTVGPNIVLEIQSFF 301
Query: 423 RNRKLSKGINSRFIALIPKVASPQSLNEFRPISLVGSLYKILAKILANRLRQVIGSVVSE 482
+ L IN I LIPK+ S + + ++RPI+L YKI++K+L+ RL+ ++ ++SE
Sbjct: 302 SSSTLQPTINKTHITLIPKIQSLKRMVDYRPIALCTVFYKIISKLLSRRLQPILQEIISE 361
Query: 483 VQSAFVKNRQILDGILITNEVVDEARK---SKKDLLLFKVDFEKAYDSVDWGYLDEVMGS 539
QSAFV R D +LIT+E + + K+ + K + KAYD ++W ++ VM
Sbjct: 362 NQSAFVPKRASNDNVLITHEALHYLKSLGAEKRCFMAVKTNMSKAYDRIEWDFIKLVMQE 421
Query: 540 MTFPTVW*KWIKECVGTATASVLVNGCPTDEFFLERGLRQGDPLSPFLFLLAAEGLNVLM 599
M F W WI +C+ T + S L+NG ERGLRQGDPLSPFLF++ +E L+ L
Sbjct: 422 MGFHQTWISWILQCITTVSYSFLLNGSAQGAVTPERGLRQGDPLSPFLFIICSEVLSGLC 481
Query: 600 KALVDAGLFKGYSVGRADPVVVSHLQFADDTLLIGNKSWANVRALRAGLILLEAMSGLKV 659
+ G G V + +P V +HL FADDT+ + + L E SG +
Sbjct: 482 RKAQLDGSLLGLRVSKGNPRV-NHLLFADDTIFFCRSDLKSCKTFLCILKKYEEASGQMI 540
Query: 660 NFHKSSLVGVNITGSWL-SEAASVLGCKVGKIPFLYLGL-SIGGDPRRLLFWEPVVNRIK 717
N KS++ T + +EA +LG ++ YLGL + G +R LF +V+RI+
Sbjct: 541 NKSKSAITFSRKTPDHIKTEAQQILGIQLVGGLGKYLGLPKMFGRKKRDLF-NQIVDRIR 599
Query: 718 NRLSGWQSRFLSFGGRLVLLKFVLTALPVYALSFFKAPSGIISSIESLFNKFFWGGGEDK 777
R W SRFLS G+ +LK VL ++P Y +S FK + I+S F+W DK
Sbjct: 600 QRSLSWSSRFLSTAGKTTMLKSVLASMPTYTMSCFKLLVSLCKRIQSALTHFWWDSSADK 659
Query: 778 RKISWIRWDTLSLRKEYGGLGVTRLREFNLALLGKWCWRLLLEKEALWRKVLVARYGVAD 837
+K+ WI W ++ K+ GGLG + FN ALL K WR++ + ++L+ +Y
Sbjct: 660 KKMCWIAWSKMAKNKKEGGLGFKDITNFNDALLAKLSWRIVQSPSCVLVRILLGKYCRTS 719
Query: 838 GGLEDGGRSCSS-WWREIVRIRDGIGEGGEGWFGSCVRRRVGDGAETDFWWDCW 890
L+ + SS WR I G+ S + + +G G +T W + W
Sbjct: 720 SFLDCSVTAASSHGWRGICT--------GKDLIKSQLGKVIGSGLDTLVWNEPW 765
>At2g28980 putative non-LTR retroelement reverse transcriptase
Length = 1529
Score = 317 bits (813), Expect = 2e-86
Identities = 255/918 (27%), Positives = 422/918 (45%), Gaps = 74/918 (8%)
Query: 177 GPRPVRLLKCWQDMPGYSDFVREKWGS---FQVSGWGGFVLKEKLKLMKAALKEWHVANT 233
G +P + + +P + V W S VS + +KLK +K L+E
Sbjct: 544 GRKPFKFVNVLTKLPQFLPVVESHWASSAPLYVSTSALYRFSKKLKTLKPHLRELGKEKL 603
Query: 234 LNLPSKI----VSLKNRRAVLDSKGEEEELSEEELGELHGISSDIHSLSRLNTSICWQQS 289
+LP + + L ++A + +E ++EE L + H LS L Q+S
Sbjct: 604 GDLPKRTREAHILLCEKQATTLANPSQETIAEE----LKAYTDWTH-LSELEEGFLKQKS 658
Query: 290 RLNWLRDGDANSKFFHSVLAARRRINSLSSILVDGVVVEGVQPVRQAVFTHSKNHFLAPI 349
+L+W+ GD N+ +FH R+ NS+ I G E +Q + F
Sbjct: 659 KLHWMNVGDGNNSYFHKAAQVRKMRNSIREIR--GPNAETLQTSEE--IKGEAERFFNEF 714
Query: 350 MTRPS----------VGHLQFRKLSSVERGGLIKPFHEEEIKAAVWDCDSYKIPGPDGIN 399
+ R S + +L + S ++ L + EEI+ ++ + K PGPDG
Sbjct: 715 LNRQSGDFHGISVEDLRNLMSYRCSVTDQNILTREVTGEEIQKVLFAMPNNKSPGPDGYT 774
Query: 400 LGFIKSFWHEMKAEIVRFVTEFHRNRKLSKGINSRFIALIPKVASPQSLNEFRPISLVGS 459
F K+ W + + + F L KG+N+ +ALIPK + ++RPIS
Sbjct: 775 SEFFKATWSLTGPDFIAAIQSFFVKGFLPKGLNATILALIPKKDEAIEMKDYRPISCCNV 834
Query: 460 LYKILAKILANRLRQVIGSVVSEVQSAFVKNRQILDGILITNEVV-DEARKSKKDLLLFK 518
LYK+++KILANRL+ ++ S + + QSAFVK R +++ +L+ E+V D ++S K
Sbjct: 835 LYKVISKILANRLKLLLPSFILQNQSAFVKERLLMENVLLATELVKDYHKESVTPRCAMK 894
Query: 519 VDFEKAYDSVDWGYLDEVMGSMTFPTVW*KWIKECVGTATASVLVNGCPTDEFFLERGLR 578
+D KA+DSV W +L + ++ FP + WIK C+ TAT SV VNG F RGLR
Sbjct: 895 IDISKAFDSVQWQFLLNTLEALNFPETFRHWIKLCISTATFSVQVNGELAGFFGSSRGLR 954
Query: 579 QGDPLSPFLFLLAAEGLNVLMKALVDAGLFK--GYSVGRADPVVVSHLQFADDTLLIGNK 636
QG LSP+LF++ +NVL + +A + + GY + + + ++HL FADD ++ +
Sbjct: 955 QGCALSPYLFVIC---MNVLSHMIDEAAVHRNIGYHP-KCEKIGLTHLCFADDLMVFVDG 1010
Query: 637 SWANVRALRAGLILLEAMSGLKVNFHKSSLVGVNITGSWLSEAASVLGCKVGKIPFLYLG 696
++ + SGL+++ KS++ ++ S + S G++P YLG
Sbjct: 1011 HQWSIEGVINVFKEFAGRSGLQISLEKSTIYLAGVSASDRVQTLSSFPFANGQLPVRYLG 1070
Query: 697 LSIGGDPRRLLFWEPVVNRIKNRLSGWQSRFLSFGGRLVLLKFVLTALPVYALSFFKAPS 756
L + + P++ +K ++S W +R LS+ GRL LL V+ ++ + +S ++ P+
Sbjct: 1071 LPLLTKQMTTADYSPLIEAVKTKISSWTARSLSYAGRLALLNSVIVSIANFWMSAYRLPA 1130
Query: 757 GIISSIESLFNKFFWGGGEDKRKISWIRWDTLSLRKEYGGLGVTRLREFNLALLGKWCWR 816
G I IE L + F W G K + I W ++ K+ GGLG+ L E N K WR
Sbjct: 1131 GCIREIEKLCSAFLWSGPVLNPKKAKIAWSSICQPKKEGGLGIKSLAEANKVSCLKLIWR 1190
Query: 817 LLLEKEALWRK---VLVARYGVADGGLEDGGRSCSSW-WREIVRIRDGIGEGGEGWFGSC 872
LL + +LW + R G E S SW W+++++ R+ S
Sbjct: 1191 LLSTQPSLWVTWIWTFIIRKGTFWSANERS--SLGSWMWKKLLKYRE--------LAKSM 1240
Query: 873 VRRRVGDGAETDFWWDCWCGDVSLCERFSRLYDLTVNKLISVRNMILLGV--DVGGEALR 930
+ V +G+ T FW+D W RL D+T R +I LG+ + E +
Sbjct: 1241 HKVEVRNGSSTSFWYDHW-------SHLGRLLDIT-----GTRRVIDLGIPLETNLETVL 1288
Query: 931 WRRRLWAWEEELVEEFXALLLTVSLQ--ESVTDRWIWLPTQDDGYSVRGAYDMLTSQEQP 988
+ + A + + Q E+ D +W ++D ++ R + + +
Sbjct: 1289 RTHQHRQHRAAIYNRINAEIQRLQQQEREAGPDISLWRSLKND-FNKRFITKVTWNNVRT 1347
Query: 989 HLHQN--LELIWHTQVPLKVSILAWRLLRDRLPTKDNLA--NRGILPLEARMCVSSCGN- 1043
H Q + +W K S L W +++RL T D + N G L + + C N
Sbjct: 1348 HQPQQNWYKGVWFPYSTPKYSFLLWLTVQNRLSTGDRIKAWNSGQL-----VTCTLCNNA 1402
Query: 1044 EEDVNHLFLSCATFSALW 1061
EE +HLF SC S +W
Sbjct: 1403 EETRDHLFFSCQYTSYVW 1420
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.323 0.140 0.445
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,147,255
Number of Sequences: 26719
Number of extensions: 1129128
Number of successful extensions: 2937
Number of sequences better than 10.0: 105
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 2444
Number of HSP's gapped (non-prelim): 193
length of query: 1091
length of database: 11,318,596
effective HSP length: 110
effective length of query: 981
effective length of database: 8,379,506
effective search space: 8220295386
effective search space used: 8220295386
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 65 (29.6 bits)
Medicago: description of AC122166.6