BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC122166.12 - phase: 0 /pseudo
(170 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g45230 putative non-LTR retroelement reverse transcriptase 54 4e-08
At4g29090 putative protein 51 3e-07
At2g16680 putative non-LTR retroelement reverse transcriptase 50 8e-07
At3g09510 putative non-LTR reverse transcriptase 49 2e-06
At2g31520 putative non-LTR retroelement reverse transcriptase 49 2e-06
At2g25550 putative non-LTR retroelement reverse transcriptase 49 2e-06
At3g45550 putative protein 48 2e-06
At3g31420 hypothetical protein 47 5e-06
At3g25270 hypothetical protein 47 5e-06
At1g33710 hypothetical protein 46 8e-06
At2g17610 putative non-LTR retroelement reverse transcriptase 45 1e-05
At2g01840 putative non-LTR retroelement reverse transcriptase 45 2e-05
At1g10000 putative reverse transcriptase 44 4e-05
At3g42890 putative protein 44 6e-05
At2g15510 putative non-LTR retroelement reverse transcriptase 43 7e-05
At1g31030 F17F8.5 43 7e-05
At1g47910 reverse transcriptase, putative 42 1e-04
At1g21330 hypothetical protein 42 2e-04
At2g19100 putative non-LTR retroelement reverse transcriptase 41 3e-04
At2g41580 putative non-LTR retroelement reverse transcriptase 41 4e-04
>At2g45230 putative non-LTR retroelement reverse transcriptase
Length = 1374
Score = 53.9 bits (128), Expect = 4e-08
Identities = 38/138 (27%), Positives = 63/138 (45%), Gaps = 7/138 (5%)
Query: 2 IWHIQVPLKVSVFAWRLLRDRLPTKSNLVYRGVIPSEAGLCVSG*GVLESAQHLFLSCSY 61
IW + VP K+ F WR + + L SNL YR + ++ CV E+ HL C +
Sbjct: 1054 IWKLDVPPKIHHFLWRCVNNCLSVASNLAYRHLAREKS--CVRCPSHGETVNHLLFKCPF 1111
Query: 62 FALLWSL--VRDWIGFVGVDTNVLSDHFVQFVHSTGGSKASQSFLQLIWLLCAWVLWTER 119
L W++ + G ++ + H V VH + ++ L + W+L W LW R
Sbjct: 1112 ARLTWAISPLPAPPGGEWAESLFRNMHHVLSVHKSQPEESDHHAL-IPWIL--WRLWKNR 1168
Query: 120 NNMCFNDSIIPIPRLLDK 137
N++ F P+++ K
Sbjct: 1169 NDLVFKGREFTAPQVILK 1186
>At4g29090 putative protein
Length = 575
Score = 51.2 bits (121), Expect = 3e-07
Identities = 34/124 (27%), Positives = 53/124 (42%), Gaps = 5/124 (4%)
Query: 2 IWHIQVPLKVSVFAWRLLRDRLPTKSNLVYRGVIPSEAGLCVSG*GVLESAQHLFLSCSY 61
IW Q K+ F W+ L + LP L YR + S+ C+ E+ HL C++
Sbjct: 257 IWKSQTSPKIQHFLWKCLSNSLPVAGALAYRHL--SKESACIRCPSCKETVNHLLFKCTF 314
Query: 62 FALLWSLVRDWIGFVGVDTNVLSDHFVQFVHSTGGSKASQSFLQLI-WLLCAWVLWTERN 120
L W++ I G + + + + G+ + QL+ WLL W LW RN
Sbjct: 315 ARLTWAISSIPIPLGGEWADSIYVNLYWVFNLGNGNPQWEKASQLVPWLL--WRLWKNRN 372
Query: 121 NMCF 124
+ F
Sbjct: 373 ELVF 376
>At2g16680 putative non-LTR retroelement reverse transcriptase
Length = 1319
Score = 49.7 bits (117), Expect = 8e-07
Identities = 34/153 (22%), Positives = 66/153 (42%), Gaps = 8/153 (5%)
Query: 2 IWHIQVPLKVSVFAWRLLRDRLPTKSNLVYRGVIPSEAGLCVSG*GVLESAQHLFLSCSY 61
+W ++ K+ VF W+ L+ L + L RG+ ++ C+ +E+ HL C +
Sbjct: 998 VWSLETVPKIKVFMWKALKGALAVEDRLRSRGIRTADG--CLFCKEEIETINHLLFQCPF 1055
Query: 62 FALLWSLVRDWIGFVGVDTNVLS--DHFVQFVHSTGGSKASQSFLQLIWLLCAWVLWTER 119
+W+L G T++ S +H +Q + G + ++ WLL W +W R
Sbjct: 1056 ARQVWALSLIQAPATGFGTSIFSNINHVIQNSQNFGIPRHMRTVSP--WLL--WEIWKNR 1111
Query: 120 NNMCFNDSIIPIPRLLDKVKYLSLGWLKTRKAS 152
N F + + ++ K W+ ++ S
Sbjct: 1112 NKTLFQGTGLTSSEIVAKAYEECNLWINAQEKS 1144
>At3g09510 putative non-LTR reverse transcriptase
Length = 484
Score = 48.5 bits (114), Expect = 2e-06
Identities = 38/131 (29%), Positives = 58/131 (44%), Gaps = 17/131 (12%)
Query: 2 IWHIQVPLKVSVFAWRLLRDRLPTKSNLVYRG--VIPSEAGLCVSG*GVLESAQHLFLSC 59
IW++ + K+ F WR L L T L RG + PS C ES H +C
Sbjct: 162 IWNLPIMPKLKHFLWRALSQALATTERLTTRGMRIDPS----CPRCHRENESINHALFTC 217
Query: 60 SYFALLW-----SLVRDWIGFVGVDTNVLSDHFVQFVHSTGGSKASQSFLQLIWLLCAWV 114
+ + W SL+R+ + + N+ + + FV T S + L +WL+ W
Sbjct: 218 PFATMAWRLSDSSLIRNQLMSNDFEENI--SNILNFVQDTTMSDFHK--LLPVWLI--WR 271
Query: 115 LWTERNNMCFN 125
+W RNN+ FN
Sbjct: 272 IWKARNNVVFN 282
>At2g31520 putative non-LTR retroelement reverse transcriptase
Length = 1524
Score = 48.5 bits (114), Expect = 2e-06
Identities = 36/129 (27%), Positives = 57/129 (43%), Gaps = 13/129 (10%)
Query: 2 IWHIQVPLKVSVFAWRLLRDRLPTKSNLVYRGVIPSEAGLCVSG*GVLESAQHLFLSCSY 61
IW++ + K+ F WR L L T L RG+ +C ES H +C +
Sbjct: 1202 IWNLPIMPKLKHFLWRALSQALATTERLTTRGMRIDP--ICPRCHRENESINHALFTCPF 1259
Query: 62 FALLW-----SLVRDWIGFVGVDTNVLSDHFVQFVHSTGGSKASQSFLQLIWLLCAWVLW 116
+ W SL+R+ + + N+ + + FV T S + L +WL+ W +W
Sbjct: 1260 ATMAWWLSDSSLIRNQLMSNDFEENI--SNILNFVQDTTMSDFHK--LLPVWLI--WRIW 1313
Query: 117 TERNNMCFN 125
RNN+ FN
Sbjct: 1314 KARNNVVFN 1322
>At2g25550 putative non-LTR retroelement reverse transcriptase
Length = 1750
Score = 48.5 bits (114), Expect = 2e-06
Identities = 38/131 (29%), Positives = 58/131 (44%), Gaps = 17/131 (12%)
Query: 2 IWHIQVPLKVSVFAWRLLRDRLPTKSNLVYRG--VIPSEAGLCVSG*GVLESAQHLFLSC 59
IW++ + K+ F WR L L T L RG + PS C ES H +C
Sbjct: 1428 IWNLPIMPKLKHFLWRALSQALATTERLTTRGMRIDPS----CPRCHRENESINHALFTC 1483
Query: 60 SYFALLW-----SLVRDWIGFVGVDTNVLSDHFVQFVHSTGGSKASQSFLQLIWLLCAWV 114
+ + W SL+R+ + + N+ + + FV T S + L +WL+ W
Sbjct: 1484 PFATMAWRLSDSSLIRNQLMSNDFEENI--SNILNFVQDTTMSDFHK--LLPVWLI--WR 1537
Query: 115 LWTERNNMCFN 125
+W RNN+ FN
Sbjct: 1538 IWKARNNVVFN 1548
>At3g45550 putative protein
Length = 851
Score = 48.1 bits (113), Expect = 2e-06
Identities = 34/126 (26%), Positives = 54/126 (41%), Gaps = 5/126 (3%)
Query: 2 IWHIQVPLKVSVFAWRLLRDRLPTKSNLVYRGVIPSEAGLCVSG*GVLESAQHLFLSCSY 61
IW++ + K+ F WR+L LPT L RG+ C ES H +C +
Sbjct: 667 IWNLPIMPKLKHFLWRILSKALPTTDRLTTRGMRIDPG--CPRCRRENESINHALFTCPF 724
Query: 62 FALLWSLVRDWIGFVGVDTNVLSDHFVQFVHSTGGSKASQS-FLQLIWLLCAWVLWTERN 120
+ W L + + +N + D+ + + + S L WLL W +W RN
Sbjct: 725 ATMAWRLSDTPLYRSSILSNNIEDNISNILLLLQNTTITDSQKLIPFWLL--WRIWKARN 782
Query: 121 NMCFND 126
N+ FN+
Sbjct: 783 NVVFNN 788
>At3g31420 hypothetical protein
Length = 1491
Score = 47.0 bits (110), Expect = 5e-06
Identities = 37/151 (24%), Positives = 58/151 (37%), Gaps = 17/151 (11%)
Query: 1 MIWHIQVPLKVSVFAWRLLRDRLPTKSNLVYRGVIPSEAGLCVSG*GVLESAQHLFLSCS 60
++W + K+ F W++L + T L YR + ++ +C E++QHLF C
Sbjct: 1167 LLWKTKTAPKIKHFCWKILSGAIATGEMLRYRHI--NKQSICKRCCRDEETSQHLFFECD 1224
Query: 61 YFALLWSLVRDWIGFVGVDTNVLSDHFVQFVHS-----TGGSKASQSFLQL-IWLLCAWV 114
Y W G+ + D V T + + QL W+L W
Sbjct: 1225 YAKATWR-------GAGLPNLIFQDSIVTLEEKFRAMFTFNPSTTNYWRQLPFWIL--WR 1275
Query: 115 LWTERNNMCFNDSIIPIPRLLDKVKYLSLGW 145
LW RN + F IP + K +L W
Sbjct: 1276 LWRSRNILTFQQKHIPWEVTVQLAKQDALEW 1306
>At3g25270 hypothetical protein
Length = 343
Score = 47.0 bits (110), Expect = 5e-06
Identities = 37/143 (25%), Positives = 56/143 (38%), Gaps = 14/143 (9%)
Query: 2 IWHIQVPLKVSVFAWRLLRDRLPTKSNLVYRGV--IPSEAGLCVSG*GVLESAQHLFLSC 59
IW ++ K+ F W+LL L T NL R + P C E++QHLF C
Sbjct: 18 IWKLKTAPKIKHFLWKLLSGALATGDNLKRRHIRNHPQCHRCCQED----ETSQHLFFDC 73
Query: 60 SYFALLW---SLVRDWIGFVGVDTNVLSDHFVQFVHSTGGSKASQSFLQLIWLLCAWVLW 116
Y +W + + G+ + + S ++ Q F IW+L W LW
Sbjct: 74 FYAQQVWRASGIPHQELRTTGI---TMETKMELLLSSCLANRQPQLFNLAIWIL--WRLW 128
Query: 117 TERNNMCFNDSIIPIPRLLDKVK 139
RN + F I L + +
Sbjct: 129 KSRNQLVFQQKSISWQNTLQRAR 151
>At1g33710 hypothetical protein
Length = 210
Score = 46.2 bits (108), Expect = 8e-06
Identities = 38/134 (28%), Positives = 59/134 (43%), Gaps = 13/134 (9%)
Query: 2 IWHIQVPLKVSVFAWRLLRDRLPTKSNLVYRGV-IPSEAGLCVSG*GVLESAQHLFLSCS 60
+W K + W DRLPTK+ L G+ + + GLC +E HLFL+C
Sbjct: 52 VWFKGATPKHAFHMWVTNLDRLPTKTRLASWGMQLQTTCGLCSLD---IEDRDHLFLTCE 108
Query: 61 YFALLWSLVR---DWIGFVGVDTNVLSDHFVQFVHSTGGSKASQSFLQLIWLLCAWVLWT 117
+ LW V + F V N L D +Q ++ + +LI + +W
Sbjct: 109 FACFLWHTVSVRLELPAFSFVVWNDLMDWTLQ-----RNRRSPPTLRKLIVQSVLYAIWK 163
Query: 118 ERNNMCFN-DSIIP 130
+RNN N ++I+P
Sbjct: 164 QRNNFLHNHETILP 177
>At2g17610 putative non-LTR retroelement reverse transcriptase
Length = 773
Score = 45.4 bits (106), Expect = 1e-05
Identities = 39/138 (28%), Positives = 57/138 (41%), Gaps = 9/138 (6%)
Query: 2 IWHIQVPLKVSVFAWRLLRDRLPTKSNLVYRGVIPSEAGLCVSG*GVLESAQHLFLSCSY 61
IW P K+ F WR + LPT NL R +I + C E HL C
Sbjct: 501 IWKQNAPPKIKHFWWRSAHNALPTAGNLKRRRLITDDT--CQRCGEASEDVNHLLFQCRV 558
Query: 62 FALLWSLVRDWIGFVGVDTNVLSDHFVQFVHSTGGSKASQSFLQLIWL--LCAWVLWTER 119
+W I D +++S+ F Q + S K +QS + + L W +W R
Sbjct: 559 SKEIWEQAH--IKLCPGD-SLMSNSFNQNLESI--QKLNQSARKDVSLFPFIGWRIWKMR 613
Query: 120 NNMCFNDSIIPIPRLLDK 137
N++ FN+ IP + K
Sbjct: 614 NDLIFNNKRWSIPDSIQK 631
>At2g01840 putative non-LTR retroelement reverse transcriptase
Length = 1715
Score = 45.1 bits (105), Expect = 2e-05
Identities = 36/152 (23%), Positives = 63/152 (40%), Gaps = 13/152 (8%)
Query: 2 IWHIQVPLKVSVFAWRLLRDRLPTKSNLVYRGVIPSEAGLCVSG*GVLESAQHLFLSCSY 61
IW +++ K+ F WR L L T + L R IP++ C E+ H+ +CSY
Sbjct: 1388 IWRLKITPKIKHFIWRCLSGALSTTTQLRNRN-IPADP-TCQRCCNADETINHIIFTCSY 1445
Query: 62 FALLWSLVRDWIGFVGVDTNVLSDHFVQFVHSTGGSKASQSF-----LQLIWLLCAWVLW 116
++W F G + +D+ + + K +Q+ L W++ W LW
Sbjct: 1446 AQVVWRSA----NFSGSNRLCFTDNLEENIRLILQGKKNQNLPILNGLMPFWIM--WRLW 1499
Query: 117 TERNNMCFNDSIIPIPRLLDKVKYLSLGWLKT 148
RN F ++ K + + W++T
Sbjct: 1500 KSRNEYLFQQLDRFPWKVAQKAEQEATEWVET 1531
>At1g10000 putative reverse transcriptase
Length = 303
Score = 43.9 bits (102), Expect = 4e-05
Identities = 30/143 (20%), Positives = 58/143 (39%), Gaps = 7/143 (4%)
Query: 10 KVSVFAWRLLRDRLPTKSNLVYRGVIPS-EAGLCVSG*GVLESAQHLFLSCSYFALLWSL 68
K+ +F W+ LP + LV R + + + C G E++ H+ C + A +W+L
Sbjct: 3 KIKLFLWKAAAGALPVGAQLVRRHISSTWDCARC----GAPETSTHMLFHCDFAAQVWNL 58
Query: 69 VRDWIGFVGVDTNVLSDHFVQFVHSTGGSKASQSFLQLIWLLCAWVLWTERNNMCFNDSI 128
+G + + T +L + + T ++ W +W RN + F +S
Sbjct: 59 APLQLGHIPIGTPIL--EALNLLKKTIVLPPVGIHTATLFPWICWHIWKARNQLIFQNSH 116
Query: 129 IPIPRLLDKVKYLSLGWLKTRKA 151
+ + K +L W + A
Sbjct: 117 FSVIETVTKAVQDALAWQSAQLA 139
>At3g42890 putative protein
Length = 534
Score = 43.5 bits (101), Expect = 6e-05
Identities = 37/140 (26%), Positives = 57/140 (40%), Gaps = 9/140 (6%)
Query: 2 IWHIQVPLKVSVFAWRLLRDRLPTKSNLVYRGVIPSEAGLCVSG*GVLESAQHLFLSCSY 61
+W K S W R+RL T LV G C +E+ +H+F SC Y
Sbjct: 108 VWFPNSTPKYSFITWIAFRNRLATGEKLVKWN--NDANGGCSFCDEAMETREHIFFSCPY 165
Query: 62 FALLWS-LVRDWIGFVGVDTNVLSDHFVQFVHSTGGSKASQSFLQLIWLLCAWVLWTERN 120
+ +WS L +D +G + + + + K L+ ++ L LW ERN
Sbjct: 166 SSAVWSALTKDLLGQLFTTS---WESMTALLTDPPRPKVHMFVLRYVFQLSIHTLWRERN 222
Query: 121 NMCFNDSIIP---IPRLLDK 137
S IP + +L+DK
Sbjct: 223 GRRHGASPIPSSKLAKLIDK 242
>At2g15510 putative non-LTR retroelement reverse transcriptase
Length = 1138
Score = 43.1 bits (100), Expect = 7e-05
Identities = 35/155 (22%), Positives = 60/155 (38%), Gaps = 17/155 (10%)
Query: 2 IWHIQVPLKVSVFAWRLLRDRLPTKSNLVYRGV-IPSEAGLCVSG*GVLESAQHLFLSCS 60
+W + K+ +F WR+L LP ++ RG+ I +C ES H+ +CS
Sbjct: 822 VWSTKSSPKIKMFLWRILSAALPVADQIIRRGMSIDPRCQICGD---EGESTNHVLFTCS 878
Query: 61 YFALLWSLVRDWIGFVGVDT------NVLSDHFVQFVHSTGGSKASQSFLQLIWLLCAWV 114
+W+L GV T N +QF+ ++ W W
Sbjct: 879 MARQVWAL-------SGVPTPEFGFQNASIFANIQFLFELKKMILVPDLVKRSWPWVLWR 931
Query: 115 LWTERNNMCFNDSIIPIPRLLDKVKYLSLGWLKTR 149
LW RN + F+ + K++ +L W + +
Sbjct: 932 LWKNRNKLFFDGITFCPLNSIVKIQEDTLEWFQAQ 966
>At1g31030 F17F8.5
Length = 872
Score = 43.1 bits (100), Expect = 7e-05
Identities = 27/119 (22%), Positives = 50/119 (41%), Gaps = 2/119 (1%)
Query: 2 IWHIQVPLKVSVFAWRLLRDRLPTKSNLVYRGVIPSEAGLCVSG*GVLESAQHLFLSCSY 61
+W K ++ W + +RLPT ++ S +G CV ++ +HLF SCSY
Sbjct: 707 VWFRHATPKYALCTWLAIHNRLPTGDRMLKWNSSGSVSGNCVLCTNNSKTLEHLFFSCSY 766
Query: 62 FALLWSLVRDWIGFVGVDTNVLSDHFVQFVHSTGGSKASQSFLQLIWLLCAWVLWTERN 120
+ +W+ + I T H + + + + + I+ + +W ERN
Sbjct: 767 ASTVWAALAKGIWKTRYSTR--WSHLLTHISTHFQDRVEGFLTRYIFQATIYHVWRERN 823
>At1g47910 reverse transcriptase, putative
Length = 1142
Score = 42.4 bits (98), Expect = 1e-04
Identities = 31/125 (24%), Positives = 49/125 (38%), Gaps = 7/125 (5%)
Query: 2 IWHIQVPLKVSVFAWRLLRDRLPTKSNLVYRGVIPSEAGLCVSG*GVLESAQHLFLSCSY 61
IW +Q P K+ F W++L +P NL RG++ + CVS ES H C
Sbjct: 828 IWKVQCPPKLRHFLWQILSGCVPVSENLRKRGILCDKG--CVSCGASEESINHTLFQCHP 885
Query: 62 FALLWSLVRDWIGFVGVDTNVLSDHFVQFVHSTGGSKASQSFLQLIWLLCAWVLWTERNN 121
+W+L + +N + F H + W++ W +W RN
Sbjct: 886 ARQIWALSQIPTAPGIFPSNSI---FTNLDHLFWRIPSGVDSAPYPWII--WYIWKARNE 940
Query: 122 MCFND 126
F +
Sbjct: 941 KVFEN 945
>At1g21330 hypothetical protein
Length = 211
Score = 41.6 bits (96), Expect = 2e-04
Identities = 38/150 (25%), Positives = 61/150 (40%), Gaps = 26/150 (17%)
Query: 3 WHIQVPL-----KVSVFAWRLLRDRLPTKSNLVYRGVIPSEAGLCVSG*GVLESAQHLFL 57
WH V L K S W +R+RL T ++ + + CV +E+ HLF
Sbjct: 44 WHQGVWLNHHKPKFSFMTWLAVRNRLSTGDRMLQWNMGVNSC--CVFCHAPVETRNHLFF 101
Query: 58 SCSYFALLWSLVRDWIGFVGVDTNVLSDHF-------VQFVHSTGGSKASQSFLQLIWLL 110
+C Y A +W+ G+ +LS F ++ + T K ++ + L
Sbjct: 102 ACQYSADVWT---------GLSRKLLSQRFSTDWDMIIKLITDTSLGKGCLFLVRYTFQL 152
Query: 111 CAWVLWTERNNMCFNDSIIP---IPRLLDK 137
+W ERN ++ IP + R LDK
Sbjct: 153 TVHSIWKERNGHRHGEAPIPSSQLTRRLDK 182
>At2g19100 putative non-LTR retroelement reverse transcriptase
Length = 1447
Score = 41.2 bits (95), Expect = 3e-04
Identities = 35/161 (21%), Positives = 64/161 (39%), Gaps = 28/161 (17%)
Query: 2 IWHIQVPLKVSVFAWRLLRDRLPTKSNLV-YRGVIPSEAGLCVSG*GVLESAQHLFLSCS 60
+W Q K S W DRL T + ++GV +G CV +S HLF +C
Sbjct: 1284 VWFYQATPKFSFCVWLAALDRLSTGDRMANWKGV---SSGSCVFCNHPTKSRDHLFFNCP 1340
Query: 61 YFALLWSLVRDWIGFVGVDTNVLSDHF-------VQFVHSTGGSKASQSFLQLIWLLCAW 113
Y + +W++ N+L+ F + V S ++ ++ + +
Sbjct: 1341 YSSEVWTVTA---------KNILTTRFTTDWHLLLNTVSSLQQNRVENFLVRYAFQASVY 1391
Query: 114 VLWTERNNMCFNDSIIPIPRLLDKVKYLSLGWLKTRKASFL 154
+W+ERN +++ RL +GW+ + + L
Sbjct: 1392 SIWSERNRRRHGNTLHSATRL--------IGWIDKQVRNIL 1424
>At2g41580 putative non-LTR retroelement reverse transcriptase
Length = 1094
Score = 40.8 bits (94), Expect = 4e-04
Identities = 29/125 (23%), Positives = 52/125 (41%), Gaps = 8/125 (6%)
Query: 2 IWHIQVPLKVSVFAWRLLRDRLPTKSNLVYRGVIPSEAGLCVSG*GVLESAQHLFLSCSY 61
IW++ K+ VF W++L+ + + L RGV+ + C E+ H+ C
Sbjct: 775 IWNLNSAPKIKVFLWKVLKGAVAVEDRLRTRGVLIEDG--CSMCPEKNETLNHILFQCPL 832
Query: 62 FALLWSLVRDWIGFVGVDTNVLS--DHFVQFVHSTGGSKASQSFLQLIWLLCAWVLWTER 119
+W+L G ++ + +H + H+T S L+ + W+LW R
Sbjct: 833 ARQVWALTPMQSPNHGFGDSIFTNVNHVIGNCHNTELS----PHLRYVSPWIIWILWKNR 888
Query: 120 NNMCF 124
N F
Sbjct: 889 NKRLF 893
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.331 0.143 0.497
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,223,859
Number of Sequences: 26719
Number of extensions: 166267
Number of successful extensions: 453
Number of sequences better than 10.0: 71
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 366
Number of HSP's gapped (non-prelim): 75
length of query: 170
length of database: 11,318,596
effective HSP length: 92
effective length of query: 78
effective length of database: 8,860,448
effective search space: 691114944
effective search space used: 691114944
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 56 (26.2 bits)
Medicago: description of AC122166.12