BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC122166.1 + phase: 0
(55 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g32630 putative protein 59 4e-10
At3g30560 hypothetical protein 58 8e-10
At3g42100 putative protein 58 1e-09
At1g35940 hypothetical protein 57 2e-09
At3g31980 hypothetical protein 56 4e-09
At5g34960 putative protein 55 5e-09
At3g13250 hypothetical protein 55 5e-09
At2g07620 putative helicase 55 7e-09
At3g31440 hypothetical protein 54 1e-08
At4g03690 hypothetical protein 51 1e-07
At2g14470 pseudogene 48 8e-07
At2g05080 putative helicase 47 2e-06
At3g51700 unknown protein 46 3e-06
At3g51690 putative protein 43 3e-05
At5g28780 putative protein 41 1e-04
At3g30420 hypothetical protein 41 1e-04
At1g54430 hypothetical protein 41 1e-04
At5g37110 putative helicase 37 0.001
At3g43350 putative protein 37 0.002
At1g52960 hypothetical protein 37 0.002
>At5g32630 putative protein
Length = 856
Score = 59.3 bits (142), Expect = 4e-10
Identities = 27/46 (58%), Positives = 37/46 (79%)
Query: 10 FSHGQLYVAISRVTSRGGLKILINDDDGDDTDVASSVIYREVSRNV 55
FSHGQLYVA+SRVTS+ GLKILI D DGD ++V+++E+ +N+
Sbjct: 810 FSHGQLYVALSRVTSKSGLKILILDKDGDIQKQTTNVVFKELFQNI 855
>At3g30560 hypothetical protein
Length = 1473
Score = 58.2 bits (139), Expect = 8e-10
Identities = 25/46 (54%), Positives = 36/46 (77%)
Query: 10 FSHGQLYVAISRVTSRGGLKILINDDDGDDTDVASSVIYREVSRNV 55
FSHGQLYVA+SRV S+GGLK+LI D G + ++V+++E+ RN+
Sbjct: 1428 FSHGQLYVAMSRVKSKGGLKVLITDSKGKQKNETTNVVFKEIFRNL 1473
>At3g42100 putative protein
Length = 1752
Score = 57.8 bits (138), Expect = 1e-09
Identities = 27/46 (58%), Positives = 37/46 (79%)
Query: 10 FSHGQLYVAISRVTSRGGLKILINDDDGDDTDVASSVIYREVSRNV 55
FSHGQLYVA+SRVTS+ GLKILI D DG+ ++V+++EV +N+
Sbjct: 1706 FSHGQLYVALSRVTSKKGLKILILDKDGNMQKQTTNVVFKEVFQNI 1751
>At1g35940 hypothetical protein
Length = 1678
Score = 56.6 bits (135), Expect = 2e-09
Identities = 27/46 (58%), Positives = 36/46 (77%)
Query: 10 FSHGQLYVAISRVTSRGGLKILINDDDGDDTDVASSVIYREVSRNV 55
FSHGQLYVA+SRVTS+ GLKILI D DG ++V+++EV +N+
Sbjct: 1632 FSHGQLYVALSRVTSKKGLKILILDKDGKLQKQTTNVVFKEVFQNI 1677
>At3g31980 hypothetical protein
Length = 1099
Score = 55.8 bits (133), Expect = 4e-09
Identities = 24/46 (52%), Positives = 36/46 (78%)
Query: 10 FSHGQLYVAISRVTSRGGLKILINDDDGDDTDVASSVIYREVSRNV 55
FSHGQLYVA+SRVTS+ GLK+LI D +G+ +V+++E+ +N+
Sbjct: 1052 FSHGQLYVALSRVTSKKGLKVLIVDKEGNTQSQTMNVVFKEIFQNI 1097
>At5g34960 putative protein
Length = 1033
Score = 55.5 bits (132), Expect = 5e-09
Identities = 26/55 (47%), Positives = 39/55 (70%)
Query: 1 MSVWIHLCYFSHGQLYVAISRVTSRGGLKILINDDDGDDTDVASSVIYREVSRNV 55
+ +++ FSHGQLYVA+SRVTS+ GLK LI D DG ++V+++EV +N+
Sbjct: 978 VGLYLPKAVFSHGQLYVALSRVTSKKGLKFLILDKDGKLQKQTTNVVFKEVFQNI 1032
>At3g13250 hypothetical protein
Length = 1419
Score = 55.5 bits (132), Expect = 5e-09
Identities = 26/46 (56%), Positives = 36/46 (77%)
Query: 10 FSHGQLYVAISRVTSRGGLKILINDDDGDDTDVASSVIYREVSRNV 55
FSHGQLYVA+SRVTS+ GLKILI D +G ++V+++EV +N+
Sbjct: 1374 FSHGQLYVALSRVTSKTGLKILILDKEGKIQKQTTNVVFKEVFQNI 1419
>At2g07620 putative helicase
Length = 1241
Score = 55.1 bits (131), Expect = 7e-09
Identities = 24/46 (52%), Positives = 36/46 (78%)
Query: 10 FSHGQLYVAISRVTSRGGLKILINDDDGDDTDVASSVIYREVSRNV 55
FSHGQLYVA+SRVTS+ GLK+LI D +G+ +V+++E+ +N+
Sbjct: 1194 FSHGQLYVALSRVTSKKGLKVLIVDKEGNTQSQTMNVVFKEIFQNL 1239
>At3g31440 hypothetical protein
Length = 536
Score = 54.3 bits (129), Expect = 1e-08
Identities = 25/46 (54%), Positives = 36/46 (77%)
Query: 10 FSHGQLYVAISRVTSRGGLKILINDDDGDDTDVASSVIYREVSRNV 55
FSHGQLYVA+SRVTS+ GLKILI D +G ++++++EV +N+
Sbjct: 490 FSHGQLYVALSRVTSKKGLKILILDKNGKLQKQTTNIVFKEVFQNI 535
>At4g03690 hypothetical protein
Length = 570
Score = 50.8 bits (120), Expect = 1e-07
Identities = 23/46 (50%), Positives = 33/46 (71%)
Query: 10 FSHGQLYVAISRVTSRGGLKILINDDDGDDTDVASSVIYREVSRNV 55
FSHGQLYVA+SRV S+ LK+LI D G ++VI++E+ +N+
Sbjct: 524 FSHGQLYVAMSRVKSKARLKVLITDSKGKQKKETTNVIFKEIFQNL 569
>At2g14470 pseudogene
Length = 1265
Score = 48.1 bits (113), Expect = 8e-07
Identities = 23/28 (82%), Positives = 25/28 (89%)
Query: 10 FSHGQLYVAISRVTSRGGLKILINDDDG 37
FSHGQLYVA+SRVTS+ GLKILI D DG
Sbjct: 1236 FSHGQLYVALSRVTSKKGLKILILDKDG 1263
>At2g05080 putative helicase
Length = 1219
Score = 46.6 bits (109), Expect = 2e-06
Identities = 22/28 (78%), Positives = 25/28 (88%)
Query: 10 FSHGQLYVAISRVTSRGGLKILINDDDG 37
FSH QLYVAISRVTS+ GLKILI +D+G
Sbjct: 1153 FSHSQLYVAISRVTSKSGLKILIVNDEG 1180
>At3g51700 unknown protein
Length = 344
Score = 46.2 bits (108), Expect = 3e-06
Identities = 22/41 (53%), Positives = 30/41 (72%), Gaps = 1/41 (2%)
Query: 12 HGQLYVAISRVTSRGGLKILINDDDG-DDTDVASSVIYREV 51
HGQ YVAIS+V SR GLK+LI D DG D + +V+++E+
Sbjct: 291 HGQRYVAISKVKSRAGLKVLITDKDGKPDQEETKNVVFKEL 331
>At3g51690 putative protein
Length = 374
Score = 42.7 bits (99), Expect = 3e-05
Identities = 21/37 (56%), Positives = 28/37 (74%), Gaps = 1/37 (2%)
Query: 10 FSHG-QLYVAISRVTSRGGLKILINDDDGDDTDVASS 45
FSHG Q++VAIS+V SR GLK+LI D DG+ + A +
Sbjct: 261 FSHGRQMFVAISKVKSRAGLKVLITDKDGNPQEEAKN 297
>At5g28780 putative protein
Length = 337
Score = 41.2 bits (95), Expect = 1e-04
Identities = 22/41 (53%), Positives = 28/41 (67%), Gaps = 2/41 (4%)
Query: 10 FSHGQLYVAISRVTSRGGLKILINDDDGDDTDVASSVIYRE 50
FSH QLYVA+SRVTS GL IL DD +D +++Y+E
Sbjct: 287 FSHVQLYVALSRVTSPIGLTILHGDDQKNDE--VKNIVYKE 325
>At3g30420 hypothetical protein
Length = 837
Score = 41.2 bits (95), Expect = 1e-04
Identities = 21/42 (50%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 10 FSHGQLYVAISRVTSRGGLKILINDDDGDDTDVASSVIYREV 51
FSHGQLYVA+SRVTS GL +L + + ++++YREV
Sbjct: 785 FSHGQLYVALSRVTSPKGLTVL-DTSKKKEGKYVTNIVYREV 825
>At1g54430 hypothetical protein
Length = 1639
Score = 41.2 bits (95), Expect = 1e-04
Identities = 21/42 (50%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 10 FSHGQLYVAISRVTSRGGLKILINDDDGDDTDVASSVIYREV 51
FSHGQLYVA+SRVTS GL +L + + ++++YREV
Sbjct: 1587 FSHGQLYVALSRVTSPKGLTVL-DTSKKKEGKYVTNIVYREV 1627
>At5g37110 putative helicase
Length = 1307
Score = 37.4 bits (85), Expect = 0.001
Identities = 18/21 (85%), Positives = 19/21 (89%)
Query: 10 FSHGQLYVAISRVTSRGGLKI 30
FSHGQLYVAISRVTS+ LKI
Sbjct: 1272 FSHGQLYVAISRVTSKTRLKI 1292
>At3g43350 putative protein
Length = 830
Score = 37.0 bits (84), Expect = 0.002
Identities = 17/20 (85%), Positives = 18/20 (90%)
Query: 10 FSHGQLYVAISRVTSRGGLK 29
FSHGQLYVAISRVTS+ G K
Sbjct: 809 FSHGQLYVAISRVTSKTGTK 828
Score = 33.9 bits (76), Expect = 0.016
Identities = 15/16 (93%), Positives = 16/16 (99%)
Query: 10 FSHGQLYVAISRVTSR 25
FSHGQLYVAISRVTS+
Sbjct: 693 FSHGQLYVAISRVTSK 708
Score = 33.9 bits (76), Expect = 0.016
Identities = 15/16 (93%), Positives = 16/16 (99%)
Query: 10 FSHGQLYVAISRVTSR 25
FSHGQLYVAISRVTS+
Sbjct: 577 FSHGQLYVAISRVTSK 592
>At1g52960 hypothetical protein
Length = 924
Score = 37.0 bits (84), Expect = 0.002
Identities = 17/20 (85%), Positives = 18/20 (90%)
Query: 10 FSHGQLYVAISRVTSRGGLK 29
FSHGQLYVAISRVTS+ G K
Sbjct: 903 FSHGQLYVAISRVTSKTGTK 922
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.322 0.138 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,273,817
Number of Sequences: 26719
Number of extensions: 37483
Number of successful extensions: 183
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 160
Number of HSP's gapped (non-prelim): 25
length of query: 55
length of database: 11,318,596
effective HSP length: 31
effective length of query: 24
effective length of database: 10,490,307
effective search space: 251767368
effective search space used: 251767368
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)
Medicago: description of AC122166.1