BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC122165.12 + phase: 1 /pseudo
         (150 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At5g55710 unknown protein                                             259  5e-70
At2g47840 unknown protein                                             139  6e-34
At4g03320 putative chloroplast protein import component                37  0.005
At1g04940 unknown protein                                              29  1.1
At4g03310 hypothetical protein                                         27  4.1
At1g47620 hypothetical protein                                         26  9.2

>At5g55710 unknown protein
          Length = 209

 Score =  259 bits (661), Expect = 5e-70
 Identities = 122/150 (81%), Positives = 137/150 (91%)

Query: 1   ASDRLISALCYFYPFFDGIQYGKFVITQFYPIQAIVQPLIPAIRVFKSFPFNGFLVFLTL 60
           ASDR+ISA+CYFYPFFDGIQYGKF+ITQ+ P Q ++QPL PAIR FKSFPFNGFL+F+TL
Sbjct: 59  ASDRIISAVCYFYPFFDGIQYGKFIITQYQPFQILIQPLFPAIRAFKSFPFNGFLIFITL 118

Query: 61  YFFVVRNPNFSKYVRFNTMQAIVLDVLLIFPDLLERGFNPRGGFGLDLLMSLDSTVFLFL 120
           YF VVRNPNFS+YVRFNTMQAIVLDVLLIFPDLLER FNPR GFGLD++MSLDSTVFLFL
Sbjct: 119 YFVVVRNPNFSRYVRFNTMQAIVLDVLLIFPDLLERSFNPRDGFGLDVVMSLDSTVFLFL 178

Query: 121 LVCLIYGSSSCILGQLPRLPIVADAADRQV 150
           LV LIYG S+C+ G  PRLP+VA+AADRQV
Sbjct: 179 LVSLIYGFSACLFGLTPRLPLVAEAADRQV 208


>At2g47840 unknown protein
          Length = 208

 Score =  139 bits (350), Expect = 6e-34
 Identities = 68/152 (44%), Positives = 100/152 (65%), Gaps = 2/152 (1%)

Query: 1   ASDRLISALCYFYPFFDGIQYGKFVITQFYPIQAIVQPLIPAIRVFKSFPFNGFLVFLTL 60
           A++R+IS   Y  PFF+ +QYG+F+  Q+  +  + +P+ P + +++S P+  F+ F  L
Sbjct: 57  ATERVISIASYALPFFNSLQYGRFLFAQYPRLGLLFEPIFPILNLYRSVPYASFVAFFGL 116

Query: 61  YFFVVRNPNFSKYVRFNTMQAIVLDVLLIFPDLLERGFNP--RGGFGLDLLMSLDSTVFL 118
           Y  VVRN +FS+YVRFN MQA+ LDVLL  P LL R  +P   GGFG+  +M   + VF+
Sbjct: 117 YLGVVRNTSFSRYVRFNAMQAVTLDVLLAVPVLLTRILDPGQGGGFGMKAMMWGHTGVFV 176

Query: 119 FLLVCLIYGSSSCILGQLPRLPIVADAADRQV 150
           F  +C +YG  S +LG+ P +P VADAA RQ+
Sbjct: 177 FSFMCFVYGVVSSLLGKTPYIPFVADAAGRQL 208


>At4g03320 putative chloroplast protein import component
          Length = 284

 Score = 36.6 bits (83), Expect = 0.005
 Identities = 28/102 (27%), Positives = 48/102 (46%), Gaps = 18/102 (17%)

Query: 54  FLVFLTL-YFFVVRNPNFSKYVRFNTMQAIVLDVLL--------IFPDLLERGFNPRGGF 104
           F+V+  L Y +VV+N     Y+RF+ M  ++L+  L         FP +     + +G F
Sbjct: 176 FMVYCYLGYMWVVKNKELPHYLRFHMMMGMLLETALQVIWCTSNFFPLI-----HFKGRF 230

Query: 105 GLDLLMSLDSTVFLFLLVCLIYGSSSCILGQLPRLPIVADAA 146
           G+   M++  T    LL C+       + G   ++P + DAA
Sbjct: 231 GMYYWMAIGFTYICLLLECI----RCALAGVYAQIPFMTDAA 268


>At1g04940 unknown protein
          Length = 274

 Score = 28.9 bits (63), Expect = 1.1
 Identities = 26/115 (22%), Positives = 48/115 (41%), Gaps = 11/115 (9%)

Query: 46  FKSFPFNG--------FLV--FLTLYFFVVRNPNFSKYVRFNTMQAIVLDVLLIFPDLLE 95
           F ++PF G        FL+  F   Y  +VR   +  + RF+ +  ++L++ L     + 
Sbjct: 158 FLTYPFLGAIGRLPSWFLMAYFFVAYLGIVRRKEWPHFFRFHVVMGMLLEIALQVIGTVS 217

Query: 96  RGFNPRGGFGLDLLMSLDSTVFLFLLVCLIYGSSSCILGQLPRLPIVADAADRQV 150
           + + P G +     M   + V    L  ++      + G    +P V DAA  Q+
Sbjct: 218 K-WMPLGVYWGKFGMHFWTAVAFAYLFTVLESIRCALAGMYADIPFVCDAAYIQI 271


>At4g03310 hypothetical protein
          Length = 562

 Score = 26.9 bits (58), Expect = 4.1
 Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 1/32 (3%)

Query: 116 VFLFLLVCLIYGSSSCIL-GQLPRLPIVADAA 146
           V  F+ +C++     C + G  P++PI++DAA
Sbjct: 506 VIWFIFLCVLLECLRCAMAGSYPQIPIISDAA 537


>At1g47620 hypothetical protein
          Length = 520

 Score = 25.8 bits (55), Expect = 9.2
 Identities = 18/48 (37%), Positives = 28/48 (57%), Gaps = 3/48 (6%)

Query: 51 FNGFLVFLTLYFFVVRNPNFSKYVRFNTMQAIVLD--VLLIFPDLLER 96
          F GFL FL  ++F+V+ P FS  +   T+Q+   +  VL + P +L R
Sbjct: 10 FIGFLCFLISFYFLVKKP-FSYLLIKKTLQSYPWNWPVLGMLPGVLLR 56


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.335    0.153    0.470 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,337,664
Number of Sequences: 26719
Number of extensions: 135771
Number of successful extensions: 430
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 425
Number of HSP's gapped (non-prelim): 6
length of query: 150
length of database: 11,318,596
effective HSP length: 90
effective length of query: 60
effective length of database: 8,913,886
effective search space: 534833160
effective search space used: 534833160
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 55 (25.8 bits)