BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC122162.11 - phase: 0
(208 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g17036 F - Box like protein 80 6e-16
At2g17027 F - Box like protein 73 9e-14
At5g24040 putative protein 69 2e-12
At2g16290 hypothetical protein 57 9e-09
At5g60060 putative protein 52 3e-07
At2g24245 unknown protein 50 6e-07
At2g24255 hypothetical protein 47 7e-06
At1g64840 hypothetical protein 47 7e-06
At1g65770 hypothetical protein 46 1e-05
At2g16320 pseudogene; similar to MURA transposase of maize Muta... 45 4e-05
At3g25750 hypothetical protein 38 0.003
At2g17690 hypothetical protein 38 0.004
At2g26160 hypothetical protein 37 0.007
At4g14260 hypothetical protein 37 0.010
At3g03730 hypothetical protein 33 0.082
At2g04830 unknown protein 33 0.14
At1g65760 hypothetical protein 32 0.18
At2g04840 hypothetical protein 32 0.31
At1g65740 hypothetical protein 32 0.31
At1g44080 hypothetical protein 32 0.31
>At2g17036 F - Box like protein
Length = 404
Score = 80.5 bits (197), Expect = 6e-16
Identities = 67/220 (30%), Positives = 104/220 (46%), Gaps = 46/220 (20%)
Query: 17 FNRRIIFRGLDEQWKLISKR-SYEYGDICLFKGRIYAVNQSGETVTVGPDS-SVELAAQP 74
+ + +FR D +W +I+ D+ +F GR +A++ +G TV V S + LAA P
Sbjct: 180 YGKLAVFRSWDREWTVINDYIPSRCQDLIMFDGRFFAIDYNGRTVVVDYSSFKLTLAANP 239
Query: 75 LDPGIPGLNKMLVESEGRLLLLAI------------------NEMFYSFSIDFFKLDEKE 116
L G G K L+ES G + L+ I NE S+ FFKL E+E
Sbjct: 240 LIGG--GDKKFLIESCGEMFLVDIEFCLNEKPEFTGGFYSYFNETTVSYKFKFFKLVERE 297
Query: 117 KKWVRLMDFDEKEKKWVKLRHFGDRIFFIGRGCSFSASASDL---CIPKGNCVVFI--DE 171
K+W V++ GD++FF+G +FSAS +D+ C+ G+ V F +E
Sbjct: 298 KRW-------------VEVEDLGDKMFFLGDDSTFSASTADIIPRCVGTGSFVFFYTHEE 344
Query: 172 TVLWIDNKR--VFHLDQNQLSCGAK---YLNLFL-PPKWI 205
+++ +D++ VF + K Y LF PP WI
Sbjct: 345 SLVVMDDRNLGVFDFRSGKTELVNKLPEYAKLFWPPPPWI 384
>At2g17027 F - Box like protein
Length = 427
Score = 73.2 bits (178), Expect = 9e-14
Identities = 51/159 (32%), Positives = 80/159 (50%), Gaps = 22/159 (13%)
Query: 15 HRFNRRIIFRGLDEQWKLISKRSYEYGDICLFKGRIYAVNQSGETVTVGPDS-SVELAAQ 73
H + +FR D W +I+ Y D+ LF GR +AV+ +G TV V S + L A
Sbjct: 180 HVSGKLAVFRSWDRAWTVINDMPSPYDDVMLFDGRFFAVDNNGRTVVVDYSSLKLTLVAS 239
Query: 74 PLDPGIPGLNKMLVESEGRLLLLAINEMFYS--------------FSIDFFKLDEKEKKW 119
P+ G K L+ES G +LL+ +M+ S F F ++E+ K+
Sbjct: 240 PV---FGGDKKFLIESCGEMLLV---DMYLSLEAVEGDPGFVEEIFEHPAFYMNERTVKF 293
Query: 120 VRLMDFDEKEKKWVKLRHFGDRIFFIGRGCSFSASASDL 158
++ F E+E+ WV + D++ F+G +FSASASD+
Sbjct: 294 -KVYRFVEREESWVDVYDLEDKMLFLGDDSTFSASASDI 331
>At5g24040 putative protein
Length = 373
Score = 68.9 bits (167), Expect = 2e-12
Identities = 57/212 (26%), Positives = 105/212 (48%), Gaps = 24/212 (11%)
Query: 8 LLLGRLSHRFNRRIIFRGLDEQWKL--ISKRSYEYGDICLFKGRIYAVNQSGETVTVGPD 65
++LG+LS FN ++R +D +W I+ S+ G I FKG+ YA++++G+T V P
Sbjct: 168 MILGKLS--FNGLAMYRSVDNRWTELEITPDSFFEG-IVPFKGKFYAIDRTGKTTVVDPT 224
Query: 66 SSVELAAQPLDPGIPGLNKMLVESEGRLLLLAINEMFYSFSIDFFKLDEKEKK-WVRLMD 124
V Q P + L+ + +L+L+ EM DF + +EKK W + +
Sbjct: 225 LEVN-TFQRSRPCDKTRKRWLLMTGDKLILV---EMCTKSRYDFHIPNIREKKIWFEISE 280
Query: 125 FDEKEKKWVKLRHFGDRIFFIGRGCSFSASASDLCIPKGNCVVFIDETVLW-------ID 177
+E+ W ++ R+ F+ C+FS A+++ + N ++F+D LW ++
Sbjct: 281 LNEERNDWDQVEDMDGRVLFLEHYCTFSCLATEIPGFRANSIIFMD---LWGGSNSYELE 337
Query: 178 NKRVFHLDQ---NQLSCGAKYLNLF-LPPKWI 205
+ V+ ++ L +Y+ LF PP W+
Sbjct: 338 SILVYEFNEKGVRSLRDKLEYIELFPFPPGWV 369
>At2g16290 hypothetical protein
Length = 415
Score = 56.6 bits (135), Expect = 9e-09
Identities = 39/153 (25%), Positives = 68/153 (43%), Gaps = 9/153 (5%)
Query: 21 IIFRGLDEQWKLISKR--SYEYGDICLFKGRIYAVNQSGETVTVGPDSSVELAAQPLDPG 78
+++R + W + + +Y Y D+ FKG+ YA++ SG + S+ + P G
Sbjct: 207 VMYRSRNMSWTQVVEHPETYAYQDLVAFKGKFYALDSSGRGRVFVVELSLRVTEIPSVKG 266
Query: 79 IPGLNKMLVESEGRLLLLAINEMFYSFSIDFFKLDEKEKKWVRLMDFDEK--EKKWVKLR 136
+K + G LLL F + DE W ++ DE+ ++KWV++
Sbjct: 267 SQYCSKESLVQLGEELLLV-----QRFIPAGRRYDEYIYTWFKVFRLDEEGGKRKWVQVN 321
Query: 137 HFGDRIFFIGRGCSFSASASDLCIPKGNCVVFI 169
+ DR+ F+G S L NC+VF+
Sbjct: 322 YLNDRVIFLGARTKLCCSVHKLPGANENCIVFL 354
>At5g60060 putative protein
Length = 374
Score = 51.6 bits (122), Expect = 3e-07
Identities = 47/139 (33%), Positives = 64/139 (45%), Gaps = 10/139 (7%)
Query: 25 GLDEQWKLISKR-SYEYGDICLFK-GRIYAVNQSGETVTVGPDSSVELAAQPLDPGIPGL 82
G DE+WK++ + Y DI L+K R V+ G+TV D V A+ L G G
Sbjct: 195 GNDEKWKILDNSWNVIYEDIMLYKDNRCIVVDDKGKTVIYDVDFKVSDLAEGLVGG-GGH 253
Query: 83 NKMLVESEGRLLLLAINEMFYSFSIDFFKLD-EKEKKWVRLMDFDEKEKKWVKLRHFGDR 141
K LVE G + L + + K D K R+ + +EK+W ++R GD
Sbjct: 254 KKHLVECSGGEVFLVDKYV----KTVWCKSDISKSVVEFRVYNLKREEKRWEEVRDLGDV 309
Query: 142 IFFIGRGCSFSAS--ASDL 158
FIG CSFS A DL
Sbjct: 310 ALFIGDDCSFSVQNPAGDL 328
>At2g24245 unknown protein
Length = 374
Score = 50.4 bits (119), Expect = 6e-07
Identities = 41/153 (26%), Positives = 69/153 (44%), Gaps = 26/153 (16%)
Query: 21 IIFRGLDEQWKLISKRSY-EYGDICLFKGRIYAVNQSGETVTVGPDSSVELAAQPLDPGI 79
++ R + +W + K S ++ F+GR YA +G+T + P S L A PL P I
Sbjct: 190 LVLRSTEMRWIRLEKPSTASCKELFTFRGRFYATFFNGDTFVIDPSS---LEATPLTPHI 246
Query: 80 PGLNKMLVESEGRLLLLAINEMFYSFSIDFFKLDEKEKKWVRLMDFDEKEKKWVKLRHFG 139
+ L+ + NE + DF + R+ DE+ +WV++ G
Sbjct: 247 ----------DSNFLVPSGNEELFLVKTDFLRC--------RVSRLDEEAAEWVEVSDLG 288
Query: 140 DRIFFIGRGC-SFSASASDL---CIPKGNCVVF 168
DR+ F+G +F SA +L C G+ ++F
Sbjct: 289 DRVLFLGGHLGNFYCSAKELPHGCGLTGDSILF 321
>At2g24255 hypothetical protein
Length = 336
Score = 47.0 bits (110), Expect = 7e-06
Identities = 45/163 (27%), Positives = 76/163 (46%), Gaps = 28/163 (17%)
Query: 21 IIFRGLDEQWKLISKRSYEYG-DICLFKGRIYAVNQSGETVTVGPDS--SVELAAQPLDP 77
++ + +WK + Y DI F+GR YA+ SG+ V + P S L + P DP
Sbjct: 155 LVLTSAEMRWKQLENVPYTICVDIVTFRGRFYALFLSGQIVVIDPYSLEVTLLLSSPQDP 214
Query: 78 GIPGLNKMLVESEGRLLLLAI---NEMFYSFSIDFFKLDEKEKKWVRLMDFDEKEKKWVK 134
L ++ + L L+ + N++ IDF +L + ++ DEK KWV+
Sbjct: 215 --RELRSLVPYGKDELFLVEVIIPNDVV----IDFSRLARRVRR------VDEKAGKWVE 262
Query: 135 LRHFGDRIFFIGRGCSFSASASDLCIPKG-----NCVVFIDET 172
+ GD + +G + S SA + P+G N V+F D++
Sbjct: 263 VGDLGDCVLLLG---NLSCSAKE--FPRGFGLTENAVLFGDQS 300
>At1g64840 hypothetical protein
Length = 384
Score = 47.0 bits (110), Expect = 7e-06
Identities = 43/159 (27%), Positives = 68/159 (42%), Gaps = 12/159 (7%)
Query: 18 NRRIIFRGLDEQWKLISKRSY-EYGDICLFKGRIYAVNQSGETVTVGPDSSVELAAQPLD 76
N ++ R + +W + K S + F+GR Y +G+ P S + P +
Sbjct: 177 NHLLVLRSSEMRWMKVKKTSIASCKGLVSFRGRFYVTFLNGDIYVFDPYSLEQTLLMPSE 236
Query: 77 PGIPGLNKMLVESEGRLLLLAINEMFYSF-SIDFFKLDEKEKKWVRLMDFDEKEKKWVKL 135
P +K L+ + L L E F F D L + RL DE+ +WV++
Sbjct: 237 P--LRSSKYLIPNGSDELFLV--EKFNPFPEADVLDLSRFACRVSRL---DEEAGQWVEV 289
Query: 136 RHFGDRIFFIGRGCSFSASASDL---CIPKGNCVVFIDE 171
GDR+ FIG + SA +L C GN ++F +E
Sbjct: 290 IDLGDRVLFIGHFGNVCCSAKELPDGCGVSGNSILFTNE 328
>At1g65770 hypothetical protein
Length = 360
Score = 46.2 bits (108), Expect = 1e-05
Identities = 39/158 (24%), Positives = 71/158 (44%), Gaps = 10/158 (6%)
Query: 30 WKLISKRSYEYGDICLFKGRIYAVNQSGETVTVGPDSSVELAAQPLDPGIPGLNKMLVES 89
WK + YE+ DI + KG+ YA++ G + D + PL G ++ LVE
Sbjct: 184 WKA-KEEGYEFSDIIVHKGQTYALDSIGIVYWIRSDLKF-IRFGPLVGDWTG-DRRLVEC 240
Query: 90 EGRLLLLA--INEMFYSFSIDFFKLDEKEKKWVRLMDFDEKEKKWVKLRHFGDRIFFIGR 147
G ++ + E + D + + ++ FD+++ K ++++ GD+ F I
Sbjct: 241 CGEFYIVERLVGESTWKRKADDTGYEYAKTVGFKVYKFDDEQGKMMEVKSLGDKAFVIAT 300
Query: 148 GCSFSASASDLCIPKGNCVVFIDETVLWIDNKRVFHLD 185
FS A + N + F D+T++ +VF LD
Sbjct: 301 DTCFSVLAHEFYGCLENAIYFTDDTMI-----KVFKLD 333
>At2g16320 pseudogene; similar to MURA transposase of maize Mutator
transposon
Length = 467
Score = 44.7 bits (104), Expect = 4e-05
Identities = 42/168 (25%), Positives = 67/168 (39%), Gaps = 22/168 (13%)
Query: 21 IIFRGLDEQWKLISKR--SYEYGDICLFKGRIYAVNQSGETVTVGPDSSVELAAQPLDPG 78
+++R + W + + Y Y D+ FKG+ YA++ SG + S+E+ P G
Sbjct: 203 VMYRSRNMSWTQVVEHPEKYAYQDLVAFKGKFYALDSSGRGRVFVVELSLEVMEIPSVRG 262
Query: 79 IPGLNKMLVESEGRLLLLAINEMFYSFSIDFFKLDEKEKKWVRLMDFDEKEKKWVKLRHF 138
+K + G LLL F+ + DE W R+ DE+E + +
Sbjct: 263 SQQSSKENLVLSGEELLLV-----QRFTPEVRHYDEYLYTWFRVFRLDEEEGRETQ---- 313
Query: 139 GDRIFFIGRGCSFSASASDLCIPKGNCVVFIDETVLW-IDNKRVFHLD 185
+ S L K NC+VFI+ + IDN V D
Sbjct: 314 ----------TNLCCSVHKLPCAKENCIVFIESNNCFIIDNDSVLLFD 351
>At3g25750 hypothetical protein
Length = 348
Score = 38.1 bits (87), Expect = 0.003
Identities = 43/172 (25%), Positives = 65/172 (37%), Gaps = 25/172 (14%)
Query: 30 WKLISKRSYEYGDICLFKGRIYAVNQSG--------ETVTVGPDSSVELAAQPLDPGIPG 81
W I + ++ DI L GRIYAV+ G + V SS L D
Sbjct: 170 WTKIKNQVEDFSDIILHMGRIYAVDLKGAIWWISLSQLTIVQQTSSTPLDYYKYD---SC 226
Query: 82 LNKMLVESEGRLLL---LAINEMFYSFSIDFFKLDEKEKKWVRLMDFDEKEKKWVKLRHF 138
+ LVE G L + L+I ++ F ++ DE KWV++
Sbjct: 227 QDTRLVEYCGDLCIVHELSITRNHIQRTVGF-----------KVYKMDEDLAKWVEVSCL 275
Query: 139 GDRIFFIGRGCSFSASASDLCIPKGNCVVFIDETVLWIDNKRVFHLDQNQLS 190
GD + F+ AS+ N + F V +N +VF LD ++
Sbjct: 276 GDNTLIVACNSCFTVVASEYHGCLKNSIYFSYYDVKKAENIKVFKLDDGSIT 327
>At2g17690 hypothetical protein
Length = 421
Score = 37.7 bits (86), Expect = 0.004
Identities = 25/98 (25%), Positives = 47/98 (47%), Gaps = 9/98 (9%)
Query: 110 FKLDEKEKKWVRLMDFDEKEKKWVKLRHFGDRIFFIGRGCSFSASASDL--CIPKGNCVV 167
F+ D + ++ DE+ KWV+++ GD+ I FS SA + C+P N +
Sbjct: 326 FERDPPKTIGFKVYKNDEELLKWVEVKSLGDKAIVIATDACFSVSAHEFYGCLP--NSIY 383
Query: 168 FIDE-----TVLWIDNKRVFHLDQNQLSCGAKYLNLFL 200
F D+ V +D+ + + +++ SC ++ FL
Sbjct: 384 FTDKKEEEVKVFKLDDGSITTMSESEQSCFQMFVPSFL 421
>At2g26160 hypothetical protein
Length = 359
Score = 37.0 bits (84), Expect = 0.007
Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 12/103 (11%)
Query: 30 WKLISKRSYEYGDICLFKGRIYAVNQSGET--VTVGPDSSVELAAQ-PLD-PGIPGLNKM 85
W I + ++ DI L KG++YA++ +G +++ P S ++ P+D G NK
Sbjct: 181 WTKIKNQVEDFLDIILHKGQVYALDLTGAIWWISLSPLSLLQFTPSIPMDYDGYDSCNKR 240
Query: 86 LVESEGRLLLL--------AINEMFYSFSIDFFKLDEKEKKWV 120
LVE G L ++ I + +K+DE KWV
Sbjct: 241 LVEYCGDLCIIHQLRLKKAYIRRSQRTVGFKVYKMDEYVAKWV 283
>At4g14260 hypothetical protein
Length = 475
Score = 36.6 bits (83), Expect = 0.010
Identities = 16/44 (36%), Positives = 23/44 (51%)
Query: 126 DEKEKKWVKLRHFGDRIFFIGRGCSFSASASDLCIPKGNCVVFI 169
DEK+K + H GD F+G +F AS C + NC+ F+
Sbjct: 393 DEKKKTMIYTEHIGDLCIFLGHSEAFCIPASTSCGLEPNCIYFV 436
>At3g03730 hypothetical protein
Length = 393
Score = 33.5 bits (75), Expect = 0.082
Identities = 33/155 (21%), Positives = 62/155 (39%), Gaps = 25/155 (16%)
Query: 25 GLDEQWKLISKRSYEYGDICLFK-GRIYAVNQSGETVTV----GPDSSVELAAQPLDPGI 79
G + WK+ ++ +FK G++Y +N + ++V G S VE A P
Sbjct: 206 GDNNSWKVFQPSKHQGCINMVFKEGKLYVLNPA-RNISVFDFSGGHSPVEYATPPSPNDD 264
Query: 80 PGLNKMLVESEGRLLLLAINEMFYSFSIDFFKLDEKEKKWVRLMDFDEKEKKWVKLRHFG 139
+ + V G +L+++ N +K +V+L D K +W ++ G
Sbjct: 265 YYVRNLAVTLSGEVLIISSNP---------------KKCFVKLYKIDPKSSEWRLIKSIG 309
Query: 140 DRIFFIGRGCSFSASASDLCIPKGNCVVFIDETVL 174
D + G + +A + NC+ F +L
Sbjct: 310 DEALILDLGITVAAKDGVM----RNCIYFSHHELL 340
>At2g04830 unknown protein
Length = 100
Score = 32.7 bits (73), Expect = 0.14
Identities = 17/63 (26%), Positives = 30/63 (46%), Gaps = 1/63 (1%)
Query: 131 KWVKLRHFGDRIFFIGRGCSFSASASDLCIP-KGNCVVFIDETVLWIDNKRVFHLDQNQL 189
KW ++ GD + GRG + + DL K + + F+D+ +W D+K +
Sbjct: 7 KWERVYSIGDEMLIFGRGVTVPLALKDLGHGIKSDSIYFVDDEDVWPDHKDWPDYKDHVS 66
Query: 190 SCG 192
+CG
Sbjct: 67 NCG 69
>At1g65760 hypothetical protein
Length = 362
Score = 32.3 bits (72), Expect = 0.18
Identities = 15/49 (30%), Positives = 27/49 (54%), Gaps = 4/49 (8%)
Query: 126 DEKEKKWVKLRHFGDRIFFIGRGCSFSASASDL--CIPKGNCVVFIDET 172
DE+ KW++++ GD F +G FS A ++ C+P N + + + T
Sbjct: 281 DEELAKWIEIKTLGDNAFLMGTDTCFSVLAHEVYGCLP--NSIYYTENT 327
>At2g04840 hypothetical protein
Length = 389
Score = 31.6 bits (70), Expect = 0.31
Identities = 23/101 (22%), Positives = 47/101 (45%), Gaps = 15/101 (14%)
Query: 93 LLLLAINEMFYSFSIDFFKLDEKEKKWVRLMDFDEKEKKWVKLRHFGDRIFFIGRGCSFS 152
L++L++ ++FY E E+ + + + KW ++ GD + G+G +
Sbjct: 272 LIILSLKQVFY----------EAERLLFYIFKMNLESFKWERVYSLGDEMLVFGQGVTIP 321
Query: 153 ASASDLCIP-KGNCVVFIDETVLWIDNKRVFHLDQNQLSCG 192
+ DL K + + F+D+ V W D++ D+ +CG
Sbjct: 322 TALKDLGDGIKSDSIYFVDKDV-WPDHQ---DHDRRVSNCG 358
>At1g65740 hypothetical protein
Length = 371
Score = 31.6 bits (70), Expect = 0.31
Identities = 33/154 (21%), Positives = 57/154 (36%), Gaps = 13/154 (8%)
Query: 38 YEYGDICLFKGRIYAVNQSGETVTVGPDSSVELAAQPLDP----GIPGLNKMLVESEGRL 93
+ + DI + KG Y ++ G + D + LD G V+ G L
Sbjct: 199 HHFSDIIVHKGVTYVLDSKGIVWCINSDLEMSRYETSLDENMTNGCRRYYMRFVDCCGEL 258
Query: 94 LLLAINEMFYSFSIDFFKLDEKEKKWVRLMDFDEKEKKWVKLRHFGDRIFFIGRGCSFSA 153
++ S ++ D++ KWV+++ GD F + FS
Sbjct: 259 YVIKRLPKENSRKRKSTLFQFSRTAGFKVYKIDKELAKWVEVKTLGDNAFVMATDTCFSV 318
Query: 154 SASDL--CIPKGNCVVFIDETVLWIDNKRVFHLD 185
A + C+P N + FI++ +VF LD
Sbjct: 319 LAHEYYGCLP--NSIYFIEDL-----EPKVFQLD 345
>At1g44080 hypothetical protein
Length = 311
Score = 31.6 bits (70), Expect = 0.31
Identities = 36/152 (23%), Positives = 62/152 (40%), Gaps = 20/152 (13%)
Query: 42 DICLFKGRIYAVNQSGETVTVGPDSSVELAAQPLDPGIP--------GLNKMLVESEGRL 93
DI L KG+IYA++ +G + S EL+ P P K LVE G L
Sbjct: 143 DIILHKGKIYALDLTGAIWWI---SLSELSIYQYGPSTPVDFYEIDNCKEKRLVEYCGEL 199
Query: 94 LLLAINEMFYSFSIDFFKLDEKEKKWVRLMDFDEKEKKWVKLRHFGDRIFFIGRGCSFSA 153
+ ++ + F + ++ + ++ D+ +WV++ GD+ + F
Sbjct: 200 CV--VHRFYKKFCVK--RVLTERTVCFKVYKMDKNLVEWVEVSSLGDKALIVATDNCFLV 255
Query: 154 SASDLCIPKGNCVVFIDETVLWIDNKRVFHLD 185
AS+ N + F D ++ VF LD
Sbjct: 256 LASEYYGCLENAIYFNDR-----EDVSVFKLD 282
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.325 0.144 0.457
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,185,599
Number of Sequences: 26719
Number of extensions: 220925
Number of successful extensions: 706
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 666
Number of HSP's gapped (non-prelim): 36
length of query: 208
length of database: 11,318,596
effective HSP length: 95
effective length of query: 113
effective length of database: 8,780,291
effective search space: 992172883
effective search space used: 992172883
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (26.6 bits)
Medicago: description of AC122162.11