BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC121245.9 + phase: 2 /pseudo/partial
         (223 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At5g65260 poly(A)-binding protein II-like                             293  4e-80
At5g10350 RNA binding protein - like                                  286  8e-78
At5g51120 putative polyA-binding protein II                           258  2e-69
At3g18610 unknown protein                                              60  1e-09
At3g12640 hypothetical protein                                         59  2e-09
At2g16940 splicing factor  like protein                                57  1e-08
At3g55460  RNA binding protein like                                    55  4e-08
At4g09050 unknown protein                                              52  2e-07
At3g52380 RNA-binding protein cp33 precursor                           51  4e-07
At2g35410 putative chloroplast RNA binding protein precursor           50  9e-07
At1g74230 putative RNA-binding protein                                 50  9e-07
At2g36660 putative poly(A) binding protein                             50  1e-06
At3g55340 putative protein                                             49  2e-06
At3g52660 putative RNA binding protein                                 49  3e-06
At1g48920 unknown protein                                              49  3e-06
At5g43960 unknown protein                                              48  5e-06
At3g50670 U1 snRNP 70K protein                                         48  5e-06
At2g46780 putative RNA-binding protein                                 48  5e-06
At4g14300 ribonucleoprotein like protein                               47  8e-06
At2g33410 putative RNA-binding protein                                 47  8e-06

>At5g65260 poly(A)-binding protein II-like
          Length = 220

 Score =  293 bits (751), Expect = 4e-80
 Identities = 152/204 (74%), Positives = 173/204 (84%), Gaps = 7/204 (3%)

Query: 23  D*DME--NDDVDMIGADNNEA-DLDDMKKRLKEMEDEAAALKEMQAKVEKEMGSVQDPAN 79
           D DME  N D+DM  AD++   +LD+MKKRLKEMEDEAAAL+EMQAKVEKEMG+ QDPA+
Sbjct: 20  DGDMEALNPDLDMAAADDDAVKELDEMKKRLKEMEDEAAALREMQAKVEKEMGA-QDPAS 78

Query: 80  ASASQINREEVDARSIFVGNVDYACTPEDVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVE 139
            +A+Q  +EEVDARS+FVGNVDYACTPE+VQQHFQ+CGTV+RVTI TDKFGQPKG+AYVE
Sbjct: 79  IAANQAGKEEVDARSVFVGNVDYACTPEEVQQHFQTCGTVHRVTILTDKFGQPKGFAYVE 138

Query: 140 FVEVEAVQEALLLNESELHGRQLKVTAKRTNVPGMKQFRPRRPSNPYMGFRGRTPYAPPF 199
           FVEVEAVQEAL LNESELHGRQLKV  KRTNVPG+KQFR RR  NPYMG+R R P+  P+
Sbjct: 139 FVEVEAVQEALQLNESELHGRQLKVLQKRTNVPGLKQFRGRR-FNPYMGYRFRRPFMSPY 197

Query: 200 AYAPAPYGYGKIPRFRMGMRYSPY 223
            Y  +PYGYGK PRFR  MRY PY
Sbjct: 198 MY--SPYGYGKAPRFRRPMRYMPY 219


>At5g10350 RNA binding protein - like
          Length = 217

 Score =  286 bits (731), Expect = 8e-78
 Identities = 143/202 (70%), Positives = 168/202 (82%), Gaps = 4/202 (1%)

Query: 23  D*DMENDDVDMIGADNNEA-DLDDMKKRLKEMEDEAAALKEMQAKVEKEMGSVQDPANAS 81
           D D+ + D+DM  AD +   +L +MK+RLKEME+EAAAL+EMQAKVEKEMG+ QDPA+ +
Sbjct: 18  DTDVPDPDIDMSAADEDAVTELAEMKRRLKEMEEEAAALREMQAKVEKEMGATQDPASMA 77

Query: 82  ASQINREEVDARSIFVGNVDYACTPEDVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFV 141
           A+Q  +EEVDARS++VGNVDYACTPE+VQ HFQ+CGTVNRVTI  DKFGQPKG+AYVEFV
Sbjct: 78  ANQEGKEEVDARSVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEFV 137

Query: 142 EVEAVQEALLLNESELHGRQLKVTAKRTNVPGMKQFRPRRPSNPYMGFRGRTPYAPPFAY 201
           EVEAVQEAL LNESELHGRQLKV+ KRTNVPGMKQ+ P R  NP MG+R R P+ PP+ Y
Sbjct: 138 EVEAVQEALQLNESELHGRQLKVSPKRTNVPGMKQYHPGR-FNPSMGYRFRRPFVPPYFY 196

Query: 202 APAPYGYGKIPRFRMGMRYSPY 223
             +PYGYGK PRFR  MRY PY
Sbjct: 197 --SPYGYGKAPRFRRPMRYMPY 216


>At5g51120 putative polyA-binding protein II
          Length = 227

 Score =  258 bits (659), Expect = 2e-69
 Identities = 128/187 (68%), Positives = 151/187 (80%), Gaps = 9/187 (4%)

Query: 38  NNEADLDDMKKRLKEMEDEAAALKEMQAKVEKEMGSVQDPANASASQINREEVDARSIFV 97
           ++  DL+DMKKR+KE+E+EA AL+EMQAK EK+MG+ QDP+    S   +EEVD+RSI+V
Sbjct: 49  SSSRDLEDMKKRIKEIEEEAGALREMQAKAEKDMGASQDPSGG-VSAAEKEEVDSRSIYV 107

Query: 98  GNVDYACTPEDVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFVEVEAVQEALLLNESEL 157
           GNVDYACTPE+VQQHFQSCGTVNRVTI TDKFGQPKG+AYVEFVEVEAVQ +L+LNESEL
Sbjct: 108 GNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVEAVQNSLILNESEL 167

Query: 158 HGRQLKVTAKRTNVPGMKQFRPR-RPSNPYMGFRGRTPYAPPFAYAPAPYGYGKIPRFRM 216
           HGRQ+KV+AKRTNVPGM+QFR R RP  P  GF    P+ P       PY YG++PRFR 
Sbjct: 168 HGRQIKVSAKRTNVPGMRQFRGRGRPFRPMRGFMPGVPFYP-------PYAYGRVPRFRR 220

Query: 217 GMRYSPY 223
            MRY PY
Sbjct: 221 PMRYRPY 227


>At3g18610 unknown protein
          Length = 636

 Score = 59.7 bits (143), Expect = 1e-09
 Identities = 40/151 (26%), Positives = 67/151 (43%), Gaps = 6/151 (3%)

Query: 51  KEMEDEAAALKEMQAKVEKEMGSVQDPANASASQINREEVDARSIFVGNVDYACTPEDVQ 110
           +E +DE    K+  + VE      +  A    +  N+ +  ++++F GN+ Y     D++
Sbjct: 342 EESKDEKVTPKKKDSDVEMVDAEQKSNAKQPKTPTNQTQGGSKTLFAGNLSYQIARSDIE 401

Query: 111 QHFQSCGTVNRVTIRTDKFGQPKGYAYVEFVEVEAVQEALLLNESELHGRQLKV-TAKRT 169
             F+  G V  V + +   G  KGY ++EF   E  Q+AL +N   L GR +++  A   
Sbjct: 402 NFFKEAGEVVDVRLSSFDDGSFKGYGHIEFASPEEAQKALEMNGKLLLGRDVRLDLANER 461

Query: 170 NVPGMKQFRPRRPSNPYMGFRGRTPYAPPFA 200
             P     R   P     G + RT Y   F+
Sbjct: 462 GTP-----RNSNPGRKGEGSQSRTIYVRGFS 487



 Score = 44.7 bits (104), Expect = 4e-05
 Identities = 36/145 (24%), Positives = 68/145 (46%), Gaps = 11/145 (7%)

Query: 29  DDVDMIGADNNEADLDDMKKRLKEMEDEAAALKEMQAKVEKEMGSVQDPANASASQINRE 88
           DD    G  + E    +  ++  EM  +    ++++  +  E G+   P N++  +   E
Sbjct: 419 DDGSFKGYGHIEFASPEEAQKALEMNGKLLLGRDVRLDLANERGT---PRNSNPGR-KGE 474

Query: 89  EVDARSIFVGNVDYACTPEDVQQ----HFQSCGTVNRVTIRTDK-FGQPKGYAYVEFVEV 143
              +R+I+V     +   +++++    HF  CG V RV + TD+  G  +G+AY++    
Sbjct: 475 GSQSRTIYVRGFSSSLGEDEIKKELRSHFSKCGEVTRVHVPTDRETGASRGFAYIDL--T 532

Query: 144 EAVQEALLLNESELHGRQLKVTAKR 168
               EAL L+ SE+ G  + V   R
Sbjct: 533 SGFDEALQLSGSEIGGGNIHVEESR 557


>At3g12640 hypothetical protein
          Length = 674

 Score = 58.9 bits (141), Expect = 2e-09
 Identities = 31/78 (39%), Positives = 44/78 (55%), Gaps = 1/78 (1%)

Query: 88  EEVDARSIFVGNVDYACTPEDVQQHFQSCGTVNRVTIRTD-KFGQPKGYAYVEFVEVEAV 146
           E+  +R+IFV NV +  T + + +HF   G V +  I TD   GQP G AY+EF   EA 
Sbjct: 511 EDASSRTIFVANVHFGATKDSLSRHFNKFGEVLKAFIVTDPATGQPSGSAYIEFTRKEAA 570

Query: 147 QEALLLNESELHGRQLKV 164
           + AL L+ +    R LK+
Sbjct: 571 ENALSLDGTSFMSRILKI 588


>At2g16940 splicing factor  like protein
          Length = 561

 Score = 56.6 bits (135), Expect = 1e-08
 Identities = 34/111 (30%), Positives = 61/111 (54%), Gaps = 3/111 (2%)

Query: 65  AKVEKEMGSVQDPANASASQINREEVDARSIFVGNVDYACTPEDVQQHFQSCGTVNRVTI 124
           ++ EK +      A  +   +      AR ++VGN+    + +D+++ F+S G+V  V +
Sbjct: 257 SEAEKNLVQSTTAAAGAGGMLGPYSGGARRLYVGNLHINMSEDDLRKVFESFGSVELVQV 316

Query: 125 RTDKFGQPKGYAYVEFVEVEAVQEALLLN-ESELHGRQLKVTA--KRTNVP 172
             D+ G  KG+ +V+F  +E  + AL LN + E+ GR +KV+A   +T VP
Sbjct: 317 PRDETGLCKGFGFVQFARLEDARNALNLNGQLEIAGRAIKVSAVTDQTEVP 367


>At3g55460  RNA binding protein like
          Length = 262

 Score = 54.7 bits (130), Expect = 4e-08
 Identities = 46/161 (28%), Positives = 69/161 (42%), Gaps = 40/161 (24%)

Query: 94  SIFVGNVDYACTPEDVQQHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFVEV-EAVQEALL 151
           S+ V N+   C PE++++ F+  G V  V I  D + GQP+G+A+VEFV+  +A +    
Sbjct: 48  SLLVRNIPLDCRPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRS 107

Query: 152 LNESELHGRQLKV----------------TAKRTNVPGMKQFR---------------PR 180
           +N     GR++ V                T  R+  P   + R               PR
Sbjct: 108 MNRRSFAGREITVVVASESRKRPEEMRVKTRTRSREPSGSRDRSHGRSRSRSISRSRSPR 167

Query: 181 RPSNPYMGFRGRTPYAPPFAYAPAPYGYGKIPRFRMGMRYS 221
           RPS+    +R R       +Y+PAP   G  PR      YS
Sbjct: 168 RPSDSRSRYRSR-------SYSPAPRRRGGPPRGEEDENYS 201


>At4g09050 unknown protein
          Length = 304

 Score = 52.4 bits (124), Expect = 2e-07
 Identities = 33/113 (29%), Positives = 55/113 (48%), Gaps = 3/113 (2%)

Query: 78  ANASASQINREEVDARSIFVGNVDYACTPEDVQQHFQSCGTVNRVTIRTDKFGQPKGYAY 137
           +++SA ++  EE+    +   NV +  TPED++  F+  G+V  + +   K  + +G  +
Sbjct: 79  SSSSAPEVVEEEISKTRLIAQNVPWTSTPEDIRSLFEKYGSVIDIEMSMHKKERNRGLVF 138

Query: 138 VEFVEVEAVQEALLLNES-ELHGRQLKVTAKRTNVPGMKQFRPRRPSNPYMGF 189
           +E    E    AL   ES E  GR+LKV   +T     K + PR   +P   F
Sbjct: 139 IEMASPEEAATALKSLESCEYEGRRLKVDYAKTK--KKKTYAPRETPSPVPTF 189


>At3g52380 RNA-binding protein cp33 precursor
          Length = 329

 Score = 51.2 bits (121), Expect = 4e-07
 Identities = 34/118 (28%), Positives = 63/118 (52%), Gaps = 9/118 (7%)

Query: 55  DEAAALKEMQAKVEKEMGSVQDPANASASQINREEVDARS------IFVGNVDYACTPED 108
           + ++A  E+QA VE+E   V++  +    ++  E+   ++      ++VGN+ Y  T  +
Sbjct: 73  EASSADDEIQASVEEEE-EVEEEGDEGEEEVEEEKQTTQASGEEGRLYVGNLPYTITSSE 131

Query: 109 VQQHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFVEVEAVQEAL-LLNESELHGRQLKV 164
           + Q F   GTV  V I  DK   + +G+ +V    +E  +EA+ + N S++ GR +KV
Sbjct: 132 LSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMFNSSQIGGRTVKV 189


>At2g35410 putative chloroplast RNA binding protein precursor
          Length = 308

 Score = 50.1 bits (118), Expect = 9e-07
 Identities = 35/137 (25%), Positives = 66/137 (47%), Gaps = 6/137 (4%)

Query: 50  LKEMEDEAAALKEMQAKV-EKEMGSVQDPANASASQINREEVDARSIFVGNVDYACTPED 108
           L+   D +  L  +   V EKE  + ++ +    ++  +     R +FV N+ ++ +  D
Sbjct: 51  LRSGSDNSRRLVSVLCSVAEKETSADEETSQEEKTEETQNSNLKRKLFVFNLPWSMSVND 110

Query: 109 VQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFVEVEAVQEAL-LLNESELHGRQLKVTAK 167
           + + F  CGTVN V I   K G+ +G+A+V     E  Q A+   +  ++ GR + V+  
Sbjct: 111 ISELFGQCGTVNNVEIIRQKDGKNRGFAFVTMASGEEAQAAIDKFDTFQVSGRIISVSFA 170

Query: 168 RTNVPGMKQFRPRRPSN 184
           R      K+  P+ P++
Sbjct: 171 RR----FKKPTPKSPND 183


>At1g74230 putative RNA-binding protein
          Length = 289

 Score = 50.1 bits (118), Expect = 9e-07
 Identities = 39/147 (26%), Positives = 63/147 (42%), Gaps = 17/147 (11%)

Query: 65  AKVEKEMGSVQDPANASASQINREE-VDARSIFVGNVDYACTPEDVQQHFQSCGTVNRVT 123
           +KV +          AS+S +     + +  IFVG + Y+     +++ F   G V    
Sbjct: 5   SKVGRLFSQTSSHVTASSSMLQSIRCMSSSKIFVGGISYSTDEFGLREAFSKYGEVVDAK 64

Query: 124 IRTDK-FGQPKGYAYVEFVEVEAVQEALLLNESELHGRQLKVTAKRTNVPGMKQFRPRRP 182
           I  D+  G+ +G+A+V F   E    A+ L+  +LHGR+++V            +   R 
Sbjct: 65  IIVDRETGRSRGFAFVTFTSTEEASNAMQLDGQDLHGRRIRV-----------NYATERG 113

Query: 183 SNPYMGFRGRTPYAPPFAYAPAPYGYG 209
           S    GF GR    P   Y  +  GYG
Sbjct: 114 S----GFGGRGFGGPGGGYGASDGGYG 136


>At2g36660 putative poly(A) binding protein
          Length = 609

 Score = 49.7 bits (117), Expect = 1e-06
 Identities = 30/114 (26%), Positives = 51/114 (44%), Gaps = 1/114 (0%)

Query: 94  SIFVGNVDYACTPEDVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEF-VEVEAVQEALLL 152
           +I+V NV+ A T E++++HF  CGT+    +  D+ G+ KG+ +V F    EA+      
Sbjct: 305 NIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTF 364

Query: 153 NESELHGRQLKVTAKRTNVPGMKQFRPRRPSNPYMGFRGRTPYAPPFAYAPAPY 206
           +    HG+ L V   +       Q + +  +         +    P  YAP  Y
Sbjct: 365 HGQMFHGKPLYVAIAQKKEDRKMQLQVQFGNRVEARKSSSSASVNPGTYAPLYY 418



 Score = 34.3 bits (77), Expect = 0.054
 Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 6/80 (7%)

Query: 91  DARSIFVGNVDYACTPEDV-----QQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFVEVEA 145
           DAR   VGNV     PE V     Q  F+  G +    + T + G+ +GY +V+F + +A
Sbjct: 105 DARRNGVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDA 164

Query: 146 VQEAL-LLNESELHGRQLKV 164
              A+  LN + +  +++ V
Sbjct: 165 AHAAIQTLNSTIVADKEIYV 184



 Score = 27.3 bits (59), Expect = 6.6
 Identities = 26/115 (22%), Positives = 51/115 (43%), Gaps = 7/115 (6%)

Query: 41  ADLDDMKKR-----LKEMEDEA-AALKEMQAKVEKEMGSVQDPANASASQINREEVDARS 94
           A L+D K R       E ED A AA++ + + +  +             ++  EE    +
Sbjct: 144 ATLEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGKFMKKTDRVKPEE-KYTN 202

Query: 95  IFVGNVDYACTPEDVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFVEVEAVQEA 149
           +++ N+D   + + +++ F   G +  + I  D+    +GYA+V F   E  + A
Sbjct: 203 LYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRA 257


>At3g55340 putative protein
          Length = 597

 Score = 49.3 bits (116), Expect = 2e-06
 Identities = 33/164 (20%), Positives = 77/164 (46%), Gaps = 11/164 (6%)

Query: 28  NDDVDMIGADNNEADLDDMKKRLKEMEDEAAALKEMQAKVEKEMGSVQDPANASASQINR 87
           +D V++   + +E   ++ K + K+ + +    K  +   + E G+V++       ++N 
Sbjct: 91  DDAVEVDELEGDEGTKEEQKPQKKKNKKKKKKRKVNKTPKKAEEGNVEEKVKVEEIEVNT 150

Query: 88  EE-----VDARSIFVGNVDYACTPEDVQQHFQSCGTVNRVTIR-TDKFGQPKGYAYVEFV 141
           +      V    ++VG + Y  T ++++ +F+SCG + +V  +   + G   G A++ F 
Sbjct: 151 DNKEEDGVVPNKLYVGGIPYQSTEDEIRSYFRSCGVIIKVDCKMRPEDGAFSGIAFITFD 210

Query: 142 EVEAVQEALLLNESELHGRQLKVTA-KRTNVPGMKQFRPRRPSN 184
             +  + AL  + + +  R L +    +T  P +    PRR ++
Sbjct: 211 TEDGAKRALAFDRAAMGDRYLTIQQYVKTTTPSI----PRRKTS 250



 Score = 46.6 bits (109), Expect = 1e-05
 Identities = 33/125 (26%), Positives = 64/125 (50%), Gaps = 3/125 (2%)

Query: 42  DLDDMKKRLKEMEDEAAALKEMQAKVEKEMGSVQDPANASASQINREEVDARS-IFVGNV 100
           D +D  KR    +  A   + +  +   +  +   P   ++S    E VD  + +++GN+
Sbjct: 210 DTEDGAKRALAFDRAAMGDRYLTIQQYVKTTTPSIPRRKTSSGFAPEMVDGYNRVYIGNL 269

Query: 101 DYACTPEDVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFVEVEAVQEALLLNESELHG 159
            +  T  D+++ F  C  +N V +  +K  G+ KGYA+V+F +  +V  AL L++  + G
Sbjct: 270 AWDTTERDIRKLFSDC-VINSVRLGKNKETGEFKGYAHVDFKDSVSVAIALKLDQQVICG 328

Query: 160 RQLKV 164
           R +K+
Sbjct: 329 RPVKI 333


>At3g52660 putative RNA binding protein
          Length = 471

 Score = 48.5 bits (114), Expect = 3e-06
 Identities = 36/152 (23%), Positives = 73/152 (47%), Gaps = 16/152 (10%)

Query: 26  MENDDVDMIGADNNEADLDDMKKRLKEMEDEAAALKEMQAKVEKEMGSVQDPANASASQI 85
           ME+++   +  DN+  ++ + +   +E+E+E   ++E++ ++E+E+   ++     A   
Sbjct: 15  MESEERVDLDGDNDPEEILEEEVEYEEVEEE--EIEEIEEEIEEEVEVEEEEEEEDAVAT 72

Query: 86  NREEVDAR------------SIFVGNVDYACTPEDVQQHFQSCGTVNRVTIRTDK-FGQP 132
             EE   R             +++G +    T  D++    S G V  V I  +K  G  
Sbjct: 73  EEEEEKKRHVELLALPPHGSEVYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDG 132

Query: 133 KGYAYVEFVEVEAVQEAL-LLNESELHGRQLK 163
           KGYA+V F   +   EA+  LN ++  G+++K
Sbjct: 133 KGYAFVTFRSKDLAAEAIDTLNNTDFRGKRIK 164


>At1g48920 unknown protein
          Length = 557

 Score = 48.5 bits (114), Expect = 3e-06
 Identities = 45/172 (26%), Positives = 73/172 (42%), Gaps = 18/172 (10%)

Query: 25  DMENDDVDMIGADNNEADLD-DMKKRLKEMEDEAAALKEMQAKVEKEMGSVQ-------D 76
           D  ++D D    D   A    D K   K   DE++  +E +++ E+E    +       D
Sbjct: 217 DSSDEDSDEESEDEKPAQKKADTKASKKSSSDESSESEEDESEDEEETPKKKSSDVEMVD 276

Query: 77  PANASASQINREEVDA----RSIFVGNVDYACTPEDVQQHFQSCGTVNRVTIRTDKF-GQ 131
              +SA Q       A    +++F  N+ +     DV+  F+  G V  V   T++  G 
Sbjct: 277 AEKSSAKQPKTPSTPAAGGSKTLFAANLSFNIERADVENFFKEAGEVVDVRFSTNRDDGS 336

Query: 132 PKGYAYVEFVEVEAVQEALLLNESELHGRQLKVTAKRTNVPGMKQFRPRRPS 183
            +G+ +VEF   E  Q+AL     E HGR L     R ++   +  R  RP+
Sbjct: 337 FRGFGHVEFASSEEAQKAL-----EFHGRPLLGREIRLDIAQERGERGERPA 383



 Score = 46.6 bits (109), Expect = 1e-05
 Identities = 27/74 (36%), Positives = 43/74 (57%), Gaps = 7/74 (9%)

Query: 91  DARSIFVGNVDYACTPEDVQ----QHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFVEVEA 145
           D + IFV   D + + +D++    +HF SCG +  V++  D+  G  KG AY+EF   E 
Sbjct: 399 DEKKIFVKGFDASLSEDDIKNTLREHFSSCGEIKNVSVPIDRDTGNSKGIAYLEF--SEG 456

Query: 146 VQEALLLNESELHG 159
            ++AL LN S++ G
Sbjct: 457 KEKALELNGSDMGG 470


>At5g43960 unknown protein
          Length = 450

 Score = 47.8 bits (112), Expect = 5e-06
 Identities = 26/93 (27%), Positives = 54/93 (57%), Gaps = 2/93 (2%)

Query: 88  EEVDARSIFVGNVDYACTPEDVQQHFQSCGTV--NRVTIRTDKFGQPKGYAYVEFVEVEA 145
           E+ + +S++V N+    +  ++++ F++ GT+  + V +RT K      YA+VEF ++ +
Sbjct: 311 EDFEFKSVYVRNLPSDISASEIEEEFKNFGTIKPDGVFLRTRKDVMGVCYAFVEFEDMTS 370

Query: 146 VQEALLLNESELHGRQLKVTAKRTNVPGMKQFR 178
           V+ A+  +   L GRQ+ +  +R N  G++  R
Sbjct: 371 VENAIKASPIYLGGRQVYIEERRPNPAGVRGAR 403


>At3g50670 U1 snRNP 70K protein
          Length = 427

 Score = 47.8 bits (112), Expect = 5e-06
 Identities = 25/91 (27%), Positives = 53/91 (57%), Gaps = 4/91 (4%)

Query: 93  RSIFVGNVDYACTPEDVQQHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFVEVEAVQEALL 151
           +++FV  ++Y  +   +++ F+S G + RV + TD+   +PKGYA++E++    ++ A  
Sbjct: 138 KTLFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEYMHTRDMKAAYK 197

Query: 152 LNESE-LHGRQLKVTAKRTNVPGMKQFRPRR 181
             + + + GR++ V  +R     +  +RPRR
Sbjct: 198 QADGQKIDGRRVLVDVERGRT--VPNWRPRR 226


>At2g46780 putative RNA-binding protein
          Length = 304

 Score = 47.8 bits (112), Expect = 5e-06
 Identities = 34/122 (27%), Positives = 57/122 (45%), Gaps = 7/122 (5%)

Query: 86  NREEVDARSIFVGNVDYACTPEDVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFVEVE 144
           N  +     IFVG + +    + ++++F+  G +    + TDK  G+ KGY +V F E E
Sbjct: 15  NTTDTKLTKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAE 74

Query: 145 AVQEALLLNESELHGRQLKVTAKRTNVPGMKQFRPRRPSNPYMGF-RGRTPYAPPFAYAP 203
           A   A       + GR+        N+  +   +PR P++P  G  R R+P +     AP
Sbjct: 75  AAMRACQNMNPVIDGRR-----ANCNLACLGAQKPRPPTSPRHGTGRFRSPGSGVGLVAP 129

Query: 204 AP 205
           +P
Sbjct: 130 SP 131


>At4g14300 ribonucleoprotein like protein
          Length = 406

 Score = 47.0 bits (110), Expect = 8e-06
 Identities = 36/136 (26%), Positives = 60/136 (43%), Gaps = 4/136 (2%)

Query: 60  LKEMQAKVEKEMGSVQDPANASASQINREEVDARSIFVGNVDYACTPEDVQQHFQSCGTV 119
           +K   ++ E+++       N S S         + IFVG +    T E+ +Q+F+  G V
Sbjct: 72  VKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPTLTDEEFRQYFEVYGPV 131

Query: 120 NRVTIRTDK-FGQPKGYAYVEFVEVEAVQEALLLNESELHGRQLKV---TAKRTNVPGMK 175
             V I  D+   +P+G+ +V F   +AV   L     +L G+Q++V     K  N  G  
Sbjct: 132 TDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQVEVKRALPKDANPGGGG 191

Query: 176 QFRPRRPSNPYMGFRG 191
           +      S  Y G+ G
Sbjct: 192 RSMGGGGSGGYQGYGG 207



 Score = 34.3 bits (77), Expect = 0.054
 Identities = 21/93 (22%), Positives = 43/93 (45%), Gaps = 13/93 (13%)

Query: 91  DARSIFVGNVDYACTPEDVQQHFQSCGTVNRVTIRTDKF-GQPKGYA------------Y 137
           D   +FVG + +    + +++HF + G V++  +  DK  G+P+G+             Y
Sbjct: 4   DQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGIRKNRCIYFLLRY 63

Query: 138 VEFVEVEAVQEALLLNESELHGRQLKVTAKRTN 170
           V  +    V+ A+   E ++ GR   +   R++
Sbjct: 64  VLDLGKVDVKRAMSREEQQVSGRTGNLNTSRSS 96


>At2g33410 putative RNA-binding protein
          Length = 404

 Score = 47.0 bits (110), Expect = 8e-06
 Identities = 31/130 (23%), Positives = 65/130 (49%), Gaps = 1/130 (0%)

Query: 36  ADNNEADLDDMKKRLKEMEDEAAALKEMQAKVEKEMGSVQDPANASASQINREEVDARSI 95
           A ++ A +D + +    +++    +K   ++ E+         NAS +  +   V  + I
Sbjct: 53  AFSDPAVIDRVLQDKHHIDNRDVDVKRAMSREEQSPAGRSGTFNASRNFDSGANVRTKKI 112

Query: 96  FVGNVDYACTPEDVQQHFQSCGTVNRVTIRTDKFGQ-PKGYAYVEFVEVEAVQEALLLNE 154
           FVG +  A T ++ + +F++ G V+   I  D+  Q P+G+ +V F   ++V   L    
Sbjct: 113 FVGGLPPALTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLHKTF 172

Query: 155 SELHGRQLKV 164
            +L+G+Q++V
Sbjct: 173 HDLNGKQVEV 182



 Score = 37.0 bits (84), Expect = 0.008
 Identities = 20/77 (25%), Positives = 43/77 (54%), Gaps = 2/77 (2%)

Query: 89  EVDARSIFVGNVDYACTPEDVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFVEVEAVQ 147
           E D   +F+G + +      ++++F + G V +VT+  +K  G+P+G+ +V F +  AV 
Sbjct: 2   ESDQGKLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSD-PAVI 60

Query: 148 EALLLNESELHGRQLKV 164
           + +L ++  +  R + V
Sbjct: 61  DRVLQDKHHIDNRDVDV 77


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.319    0.137    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,109,973
Number of Sequences: 26719
Number of extensions: 218866
Number of successful extensions: 1504
Number of sequences better than 10.0: 222
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 123
Number of HSP's that attempted gapping in prelim test: 1260
Number of HSP's gapped (non-prelim): 310
length of query: 223
length of database: 11,318,596
effective HSP length: 96
effective length of query: 127
effective length of database: 8,753,572
effective search space: 1111703644
effective search space used: 1111703644
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)