BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC121245.5 + phase: 0
(72 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g17840 putative ABC transporter (At1g17840) 65 6e-12
At3g21090 ABC transporter, putative 64 1e-11
At1g51500 ATP-dependent transmembrane transporter, putative 63 3e-11
At1g51460 ATP-dependent transmembrane transporter like protein 59 4e-10
At2g01320 putative ABC transporter 57 2e-09
At3g52310 ABC transporter-like protein 54 1e-08
At4g27420 putative protein 53 3e-08
At1g53390 putative ABC transporter gb|AAD31586.1 52 4e-08
At3g55100 ABC transporter - like protein 52 7e-08
At2g28070 putative ABC transporter 50 2e-07
At5g06530 ABC transporter like protein 49 3e-07
At1g31770 unknown protein 49 3e-07
At1g71960 putative ABC transporter 49 5e-07
At3g55130 ABC transporter - like protein 48 8e-07
At3g13220 ABC transporter 48 8e-07
At5g13580 ABC transporter-like protein 48 1e-06
At3g55110 ABC transporter - like protein 47 2e-06
At2g13610 putative ABC transporter 46 3e-06
At2g37010 putative ABC transporter 45 5e-06
At3g25620 membrane transporter, putative 45 7e-06
>At1g17840 putative ABC transporter (At1g17840)
Length = 703
Score = 65.1 bits (157), Expect = 6e-12
Identities = 30/53 (56%), Positives = 42/53 (78%), Gaps = 1/53 (1%)
Query: 14 LTWKDIWVNTISNGKNGSKSILQGLTGYAKPGQLLAIMGPSGCGKSTLLDTLA 66
LTW+D+ V ++ G ++++L+GLTGYA+PG L A+MGPSG GKST+LD LA
Sbjct: 50 LTWQDLTV-MVTMGDGETQNVLEGLTGYAEPGSLTALMGPSGSGKSTMLDALA 101
>At3g21090 ABC transporter, putative
Length = 680
Score = 63.9 bits (154), Expect = 1e-11
Identities = 33/58 (56%), Positives = 44/58 (74%), Gaps = 2/58 (3%)
Query: 11 GTCLTWKDIWVNTISNGKNG-SKSILQGLTGYAKPGQLLAIMGPSGCGKSTLLDTLAG 67
G L W+D+ V I N +G ++ +LQ L GYA+PG+++AIMGPSG GKSTLLD+LAG
Sbjct: 22 GAYLAWEDLTV-VIPNFSDGPTRRLLQRLNGYAEPGRIMAIMGPSGSGKSTLLDSLAG 78
>At1g51500 ATP-dependent transmembrane transporter, putative
Length = 687
Score = 62.8 bits (151), Expect = 3e-11
Identities = 32/58 (55%), Positives = 43/58 (73%), Gaps = 2/58 (3%)
Query: 11 GTCLTWKDIWVNTISNGKNG-SKSILQGLTGYAKPGQLLAIMGPSGCGKSTLLDTLAG 67
G L W+D+ V I N G ++ +L GL G+A+PG+++AIMGPSG GKSTLLD+LAG
Sbjct: 21 GAYLAWEDLTV-VIPNFSGGPTRRLLDGLNGHAEPGRIMAIMGPSGSGKSTLLDSLAG 77
>At1g51460 ATP-dependent transmembrane transporter like protein
Length = 678
Score = 58.9 bits (141), Expect = 4e-10
Identities = 27/54 (50%), Positives = 38/54 (70%)
Query: 14 LTWKDIWVNTISNGKNGSKSILQGLTGYAKPGQLLAIMGPSGCGKSTLLDTLAG 67
+ W+D+ V + G+ +K +L G+ G +P ++LAIMGPSG GKSTLLD LAG
Sbjct: 10 VAWEDLTVVIPNFGEGATKRLLNGVNGCGEPNRILAIMGPSGSGKSTLLDALAG 63
>At2g01320 putative ABC transporter
Length = 725
Score = 57.0 bits (136), Expect = 2e-09
Identities = 27/66 (40%), Positives = 41/66 (61%)
Query: 7 DEVDGTCLTWKDIWVNTISNGKNGSKSILQGLTGYAKPGQLLAIMGPSGCGKSTLLDTLA 66
D + + W++I + + +L+ ++G AKPG+LLAIMGPSG GK+TLL+ LA
Sbjct: 63 DSIRPVTIRWRNITCSLSDKSSKSVRFLLKNVSGEAKPGRLLAIMGPSGSGKTTLLNVLA 122
Query: 67 GTNKLN 72
G L+
Sbjct: 123 GQLSLS 128
>At3g52310 ABC transporter-like protein
Length = 737
Score = 53.9 bits (128), Expect = 1e-08
Identities = 29/56 (51%), Positives = 37/56 (65%), Gaps = 2/56 (3%)
Query: 14 LTWKDIWVNTISNGKNGS--KSILQGLTGYAKPGQLLAIMGPSGCGKSTLLDTLAG 67
L + DI + G S KSIL G++G A PG+LLA+MGPSG GK+TLL+ L G
Sbjct: 145 LKFIDITYKVTTKGMTSSSEKSILNGISGSAYPGELLALMGPSGSGKTTLLNALGG 200
>At4g27420 putative protein
Length = 635
Score = 52.8 bits (125), Expect = 3e-08
Identities = 23/42 (54%), Positives = 32/42 (75%)
Query: 26 NGKNGSKSILQGLTGYAKPGQLLAIMGPSGCGKSTLLDTLAG 67
N K ++IL+GLTG KPG++LA++GPSG GK++LL L G
Sbjct: 58 NDKTEERTILKGLTGIVKPGEILAMLGPSGSGKTSLLTALGG 99
>At1g53390 putative ABC transporter gb|AAD31586.1
Length = 1096
Score = 52.4 bits (124), Expect = 4e-08
Identities = 26/54 (48%), Positives = 38/54 (70%), Gaps = 4/54 (7%)
Query: 14 LTWKDIWVNTISNGKNGSKSILQGLTGYAKPGQLLAIMGPSGCGKSTLLDTLAG 67
L++KD+ + SNGK +L+ +TG KPG++ A+MGPSG GK++LL LAG
Sbjct: 477 LSFKDLTLTLKSNGKQ----VLRCVTGSMKPGRITAVMGPSGAGKTSLLSALAG 526
>At3g55100 ABC transporter - like protein
Length = 662
Score = 51.6 bits (122), Expect = 7e-08
Identities = 23/36 (63%), Positives = 30/36 (82%)
Query: 32 KSILQGLTGYAKPGQLLAIMGPSGCGKSTLLDTLAG 67
K++L G+TG AK G++LAI+G SG GKSTL+D LAG
Sbjct: 49 KTLLNGITGEAKEGEILAILGASGAGKSTLIDALAG 84
>At2g28070 putative ABC transporter
Length = 705
Score = 50.4 bits (119), Expect = 2e-07
Identities = 25/60 (41%), Positives = 36/60 (59%), Gaps = 1/60 (1%)
Query: 8 EVDGTCLTWKDIWVNTISNGKNGSKSILQGLTGYAKPGQLLAIMGPSGCGKSTLLDTLAG 67
++ G + WKD+ V T+ + S +++ GYA PG + IMGP+ GKSTLL LAG
Sbjct: 108 KIAGASIAWKDLTV-TMKGKRKYSDKVVKSSNGYAFPGTMTVIMGPAKSGKSTLLRALAG 166
>At5g06530 ABC transporter like protein
Length = 627
Score = 49.3 bits (116), Expect = 3e-07
Identities = 22/36 (61%), Positives = 28/36 (77%)
Query: 32 KSILQGLTGYAKPGQLLAIMGPSGCGKSTLLDTLAG 67
K IL G++G PG++LA+MGPSG GK+TLL LAG
Sbjct: 53 KEILTGISGSVNPGEVLALMGPSGSGKTTLLSLLAG 88
>At1g31770 unknown protein
Length = 648
Score = 49.3 bits (116), Expect = 3e-07
Identities = 22/40 (55%), Positives = 29/40 (72%)
Query: 28 KNGSKSILQGLTGYAKPGQLLAIMGPSGCGKSTLLDTLAG 67
K+ K+IL G+TG PG+ LA++GPSG GK+TLL L G
Sbjct: 75 KSKEKTILNGITGMVCPGEFLAMLGPSGSGKTTLLSALGG 114
>At1g71960 putative ABC transporter
Length = 662
Score = 48.9 bits (115), Expect = 5e-07
Identities = 20/36 (55%), Positives = 29/36 (80%)
Query: 32 KSILQGLTGYAKPGQLLAIMGPSGCGKSTLLDTLAG 67
++IL G+TG PG+ +A++GPSG GKSTLL+ +AG
Sbjct: 81 RTILSGVTGMISPGEFMAVLGPSGSGKSTLLNAVAG 116
>At3g55130 ABC transporter - like protein
Length = 725
Score = 48.1 bits (113), Expect = 8e-07
Identities = 21/40 (52%), Positives = 30/40 (74%)
Query: 28 KNGSKSILQGLTGYAKPGQLLAIMGPSGCGKSTLLDTLAG 67
+NG K++L ++G A G +LA++G SG GKSTL+D LAG
Sbjct: 93 QNGVKTLLDDVSGEASDGDILAVLGASGAGKSTLIDALAG 132
>At3g13220 ABC transporter
Length = 647
Score = 48.1 bits (113), Expect = 8e-07
Identities = 21/36 (58%), Positives = 28/36 (77%)
Query: 32 KSILQGLTGYAKPGQLLAIMGPSGCGKSTLLDTLAG 67
K IL+G+TG PG++LA+MGPSG GK+TLL + G
Sbjct: 66 KHILKGITGSTGPGEILALMGPSGSGKTTLLKIMGG 101
>At5g13580 ABC transporter-like protein
Length = 727
Score = 47.8 bits (112), Expect = 1e-06
Identities = 20/36 (55%), Positives = 30/36 (82%)
Query: 31 SKSILQGLTGYAKPGQLLAIMGPSGCGKSTLLDTLA 66
+K++L G+TG A+ G++LA++G SG GKSTL+D LA
Sbjct: 105 TKTLLNGITGEARDGEILAVLGASGSGKSTLIDALA 140
>At3g55110 ABC transporter - like protein
Length = 708
Score = 47.0 bits (110), Expect = 2e-06
Identities = 20/36 (55%), Positives = 29/36 (80%)
Query: 32 KSILQGLTGYAKPGQLLAIMGPSGCGKSTLLDTLAG 67
K++L +TG A+ G++LA++G SG GKSTL+D LAG
Sbjct: 89 KTLLDDITGEARDGEILAVLGGSGAGKSTLIDALAG 124
>At2g13610 putative ABC transporter
Length = 649
Score = 46.2 bits (108), Expect = 3e-06
Identities = 22/38 (57%), Positives = 30/38 (78%)
Query: 29 NGSKSILQGLTGYAKPGQLLAIMGPSGCGKSTLLDTLA 66
N K +L+G+T AKP ++LAI+GPSG GKS+LL+ LA
Sbjct: 57 NKVKHVLKGVTCRAKPWEILAIVGPSGAGKSSLLEILA 94
>At2g37010 putative ABC transporter
Length = 386
Score = 45.4 bits (106), Expect = 5e-06
Identities = 21/40 (52%), Positives = 27/40 (67%)
Query: 28 KNGSKSILQGLTGYAKPGQLLAIMGPSGCGKSTLLDTLAG 67
K K IL+ +TG PG++ A+MGPSG GK+T L LAG
Sbjct: 19 KGKHKHILRSVTGKIMPGRVSAVMGPSGAGKTTFLSALAG 58
>At3g25620 membrane transporter, putative
Length = 646
Score = 45.1 bits (105), Expect = 7e-06
Identities = 19/37 (51%), Positives = 30/37 (80%)
Query: 31 SKSILQGLTGYAKPGQLLAIMGPSGCGKSTLLDTLAG 67
++ +L+ ++G KPG+LLA++GPSG GK+TL+ LAG
Sbjct: 95 NRLVLKCVSGIVKPGELLAMLGPSGSGKTTLVTALAG 131
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.311 0.133 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,866,939
Number of Sequences: 26719
Number of extensions: 63124
Number of successful extensions: 530
Number of sequences better than 10.0: 170
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 332
Number of HSP's gapped (non-prelim): 213
length of query: 72
length of database: 11,318,596
effective HSP length: 48
effective length of query: 24
effective length of database: 10,036,084
effective search space: 240866016
effective search space used: 240866016
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 52 (24.6 bits)
Medicago: description of AC121245.5