BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC121245.1 - phase: 0 /pseudo
         (660 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At5g65290 unknown protein                                             591  e-169
At2g16940 splicing factor  like protein                                33  0.66
At1g05570 putative glucan synthase                                     32  1.1
At2g19090 hypothetical protein                                         30  3.3
At4g00349 unknown protein                                              30  4.3
At5g50920 ATP-dependent Clp protease, ATP-binding subunit              30  5.6
At5g36860 putative protein                                             29  7.3
At5g13150 putative protein                                             29  9.5

>At5g65290 unknown protein
          Length = 733

 Score =  591 bits (1523), Expect = e-169
 Identities = 284/401 (70%), Positives = 342/401 (84%), Gaps = 2/401 (0%)

Query: 7   NVTISFLWSLSYWSTFLLTWAVVPLLQGYEDAGDFTVKARLRTSLHGNLVFYLSLGSVAL 66
           N  ISFLWS SYWSTFLLTWAVVPL+QG+EDAGDFTV  RL+TS+H NLVFYL LG + L
Sbjct: 67  NGAISFLWSWSYWSTFLLTWAVVPLIQGFEDAGDFTVSERLKTSVHVNLVFYLVLGFIGL 126

Query: 67  FGLILLITLNKFWSGSVRGFAMACSNTFGLVTGAFLLGFGMSEIPKGIWLNADWAIQQKF 126
            GLILLI +++ W+GS+ G+AMACSNTFGLVTGAFLLGFG+SEIPK +W NADW  +QK 
Sbjct: 127 LGLILLIMMHRNWTGSILGYAMACSNTFGLVTGAFLLGFGLSEIPKTLWKNADWTTRQKV 186

Query: 127 LSHKVAKMAVKLDDAHQDFSNAIVITQATSKQMSKRDSLRPYMNIIDKMLVQMLNEDPSF 186
           LSHK+AK+AVKLD+AHQ+ SNAIV+ QATS QMSKRD +RPYMN+ID ML +M  EDPSF
Sbjct: 187 LSHKIAKIAVKLDNAHQELSNAIVVAQATSTQMSKRDPMRPYMNVIDAMLAKMFREDPSF 246

Query: 187 KPQGGRLGESDMDYDTDEKSMASLRRRLRRAREQYYRYRSEYTKFVLEALELEDTVKNYD 246
           KPQGG+LGE+DMDYDTDEKSMA+LRR LR A+++YYRY+SEY  +V EAL LEDT+KNY+
Sbjct: 247 KPQGGQLGENDMDYDTDEKSMATLRRHLRNAKDEYYRYKSEYLTYVTEALVLEDTMKNYE 306

Query: 247 RRDSTGWRYISCLRPERIGKVGAVLDTIEFLWRCILRKQLEKSLAVILGFMSFAILLAEA 306
           RRD+TGW+YIS  R  R GK+G +LD++EF+WRCIL+KQ++  LAV++G MS AILLAEA
Sbjct: 307 RRDATGWKYISSFRATRTGKMGNLLDSLEFMWRCILKKQIQMVLAVVMGIMSAAILLAEA 366

Query: 307 TILPSGVDLSLFSILVHAAGHTEVLVQLAAFVPLMYMCVCTYYSLFKMGMFMFYSLTPRQ 366
           T+L S +DLSLFSIL+ +    E+LVQ  AFVPL+YMCVCTYYSLFK+GM M YSLTPRQ
Sbjct: 367 TLLLSKLDLSLFSILISSVKSDELLVQAFAFVPLVYMCVCTYYSLFKIGMLMIYSLTPRQ 426

Query: 367 TSSVSLLMICSMVARYAAPISYNFLNLINIGGDRKTVFEKR 407
           TSSV+LLMICSM+ARYA PISYNF+NLI +  +  T+FEK+
Sbjct: 427 TSSVNLLMICSMIARYAPPISYNFINLIQLHSE--TIFEKK 465


>At2g16940 splicing factor  like protein
          Length = 561

 Score = 32.7 bits (73), Expect = 0.66
 Identities = 21/66 (31%), Positives = 32/66 (47%)

Query: 182 EDPSFKPQGGRLGESDMDYDTDEKSMASLRRRLRRAREQYYRYRSEYTKFVLEALELEDT 241
           +D   + + G+  E D D D D K     + R RR+R +  R+RS+  +  LE    E  
Sbjct: 93  KDVDKEERNGKDRERDRDKDRDSKGRDHEKDRSRRSRSRSERHRSQEREKSLEIEPKERE 152

Query: 242 VKNYDR 247
            K+ DR
Sbjct: 153 TKDRDR 158


>At1g05570 putative glucan synthase
          Length = 1858

 Score = 32.0 bits (71), Expect = 1.1
 Identities = 20/72 (27%), Positives = 37/72 (50%), Gaps = 2/72 (2%)

Query: 24  LTWAVVPLLQGYEDAGDFTVKARLRTSLHGNLVFYLSLGSVALFGLILLITLNKFWSGSV 83
           +T A++ L Q   D    + KAR   SL+  L + + +G+ A++ +++ +T    W  + 
Sbjct: 521 ITAAILKLAQAVLDIA-LSWKARHSMSLYVKLRYVMKVGAAAVWVVVMAVTYAYSWK-NA 578

Query: 84  RGFAMACSNTFG 95
            GF+    N FG
Sbjct: 579 SGFSQTIKNWFG 590


>At2g19090 hypothetical protein
          Length = 844

 Score = 30.4 bits (67), Expect = 3.3
 Identities = 14/35 (40%), Positives = 20/35 (57%)

Query: 477 SIWSNNFAERALSSSARAQSWRTCFPFSQKFQHEY 511
           +I S   A+ AL+  A+ ++WRTCF F    Q  Y
Sbjct: 650 AINSQRLAQSALNLEAQLRNWRTCFEFWITSQRSY 684


>At4g00349 unknown protein
          Length = 514

 Score = 30.0 bits (66), Expect = 4.3
 Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 4/92 (4%)

Query: 27  AVVPLLQGYEDAGDFTVKARLRTSLHGNLVFYLSLGSV--ALFGLILLITLNKFWSGSVR 84
           A+V L+   + A  FT    +R ++  +L + L +  +  +L  +I  + +   W   V 
Sbjct: 377 AIVILITRDDFAVIFTESEEMRKAV-ADLAYLLGITMILNSLQPVISGVAVGGGWQAPVA 435

Query: 85  GFAMACSNTFGLVTGAFLLGFGMSEIPKGIWL 116
              + C   FGL  G FLLG+  S   +GIW+
Sbjct: 436 YINLFCYYAFGLPLG-FLLGYKTSLGVQGIWI 466


>At5g50920 ATP-dependent Clp protease, ATP-binding subunit
          Length = 929

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 19/87 (21%), Positives = 37/87 (41%), Gaps = 3/87 (3%)

Query: 137 KLDDAHQDFSNAIVITQATSKQMSKRDSLRPYMNIIDKMLVQMLNEDPSFKPQGGRLGES 196
           +++ AH D  N ++      +    +     + N +   L+   N   S   +GGR    
Sbjct: 718 EIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTL---LIMTSNVGSSVIEKGGRRIGF 774

Query: 197 DMDYDTDEKSMASLRRRLRRAREQYYR 223
           D+DYD  + S   ++  +    +QY+R
Sbjct: 775 DLDYDEKDSSYNRIKSLVTEELKQYFR 801


>At5g36860 putative protein
          Length = 1204

 Score = 29.3 bits (64), Expect = 7.3
 Identities = 20/87 (22%), Positives = 37/87 (41%), Gaps = 21/87 (24%)

Query: 184 PSFKPQGGRLGESDMDYDTDEKS------------MASLRRRLRRAREQYYRYRSEYTKF 231
           PS K    +  +S+MDYD +E +            +  +RR L+   +Q Y+   +   F
Sbjct: 428 PSPKEPAMKNQKSEMDYDKEETAEDCFGEPVPERFIVEMRRSLKELEDQMYQMHEDMKDF 487

Query: 232 VLEALEL---------EDTVKNYDRRD 249
           V + +           E T+ ++D R+
Sbjct: 488 VRDQIRAALDPKGKRPEQTIPSHDSRE 514


>At5g13150 putative protein
          Length = 653

 Score = 28.9 bits (63), Expect = 9.5
 Identities = 31/116 (26%), Positives = 53/116 (44%), Gaps = 11/116 (9%)

Query: 144 DFSNAIVITQATSKQMSK----RDSLRPYMNIIDKMLVQMLNEDPSFKPQGGRLGESDMD 199
           DFS A+V+T+ +S+++ K     ++LR  +  +++    ++ E    K    RLGE+ + 
Sbjct: 324 DFSGAVVLTKRSSEKLFKFLDMYETLRDLIPAVEQSDSDLIQE---IKLAQTRLGEAAVT 380

Query: 200 -YDTDEKSMASLRRRL---RRAREQYYRYRSEYTKFVLEALELEDTVKNYDRRDST 251
            +   EKS+ S   R      A     RY   Y K+  E  E  D V  +   + T
Sbjct: 381 IFGELEKSIKSDNGRTPVPSGAVHPLTRYTMNYLKYACEYKETLDQVFQHYEANQT 436


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.348    0.152    0.521 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,094,341
Number of Sequences: 26719
Number of extensions: 516635
Number of successful extensions: 2316
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 2310
Number of HSP's gapped (non-prelim): 10
length of query: 660
length of database: 11,318,596
effective HSP length: 106
effective length of query: 554
effective length of database: 8,486,382
effective search space: 4701455628
effective search space used: 4701455628
T: 11
A: 40
X1: 14 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.8 bits)
S2: 63 (28.9 bits)