BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC121242.7 + phase: 0
(435 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g24200 monooxygenase, putatve 526 e-150
At1g24340 unknown protein 50 3e-06
At5g67030 zeaxanthin epoxidase 45 6e-05
At2g35660 CTF2A 44 2e-04
At2g29720 Hydroxylase/Oxygenase (CTF2B) 43 3e-04
At5g05320 monooxygenase 42 7e-04
At4g38540 monooxygenase 2 (MO2) 40 0.003
At1g74470 geranylgeranyl reductase 37 0.021
At1g58440 unknown protein 37 0.021
At5g24150 squalene monooxygenase 34 0.14
At5g24160 squalene monooxygenase 1,2 (squalene epoxidase 1,2) (s... 33 0.31
At2g40480 hypothetical protein 33 0.40
At2g22830 putative squalene epoxidase 33 0.40
At1g64170 hypothetical protein 32 0.53
At4g37760 unknown protein 31 1.2
At5g24140 squalene monooxygenase 2 (squalene epoxidase 2) (SE 2)... 30 3.4
At4g15760 hypothetical protein 30 3.4
At5g11330 unknown protein 29 5.8
At2g29760 hypothetical protein 28 7.6
At1g22440 Very similar to alcohol dehydrogenase 28 7.6
>At3g24200 monooxygenase, putatve
Length = 509
Score = 526 bits (1356), Expect = e-150
Identities = 267/440 (60%), Positives = 326/440 (73%), Gaps = 14/440 (3%)
Query: 2 PMTKQLSVAIIDSNPALSSGLCIKKEDPPDPRVSTVTPASISFLQEAGAWKYVEQNRHAY 61
P+TK L+VAIID+NP L I+K PDPRVSTVTPA+ISFL++ GAWKY+EQ RHAY
Sbjct: 76 PLTKHLNVAIIDNNPLLGRRNIIEKGHQPDPRVSTVTPATISFLKDIGAWKYIEQQRHAY 135
Query: 62 FKKMQVWDYTGFGYARYDAGDVNKDFLG-------CVAENKVLHSSLLSCIKDSDFKTTF 114
F KMQ D Y K F G C+ ++ ++ I++SD + T
Sbjct: 136 FDKMQALDIQDTMLMMYI-----KMFWGKHIAIYICILDDVNSCVLIVDMIQESDLQKTV 190
Query: 115 YPSRLTSMTLNTNSMSVVEENTPSKEPSPAQGHASKLELSDGSSIYAKLVVGADGGKSRV 174
YP+RL +M + +S PS +G +KLELSDG+ +YAKLVVGADG KSRV
Sbjct: 191 YPARLNAMDMLPSSSLTGLGEVPSTTDLFMRGRLAKLELSDGNRVYAKLVVGADGSKSRV 250
Query: 175 RELAGFKTTGWNYSQNAIICTVEHTSANHCAWQRFLPNGPIALLPMGENFSNIVWTMSPT 234
RELAG KTTGWNYSQNAIICTVEHT+ N+ AWQRFLPNGPIALLP+G+ FSNIVWTM P
Sbjct: 251 RELAGIKTTGWNYSQNAIICTVEHTAENYTAWQRFLPNGPIALLPIGDKFSNIVWTMDPK 310
Query: 235 ESNDRKSITEEMFLKDVNSALDYGYGPHPTSSSLGARDIFSWLKMDGTLSANEPFEIPPK 294
E++DRK + E+ F+K VN ALD GYGP+P ++S +RD SWL D T+SA E FE PPK
Sbjct: 311 EASDRKLMNEDDFIKAVNDALDSGYGPNPETTS--SRDSLSWLTGDATISAKERFETPPK 368
Query: 295 AIRLASERMVFPLSLRHANSYATKRVVLIGDAAHTIHPLAGQGVNLGFGDAYSLSRVIAE 354
++L+SERM+FPLSLRHA Y +KRV L+GD+AHT+HPLAGQGVNLGF DA +LS+ IAE
Sbjct: 369 VVKLSSERMMFPLSLRHAKDYVSKRVALVGDSAHTVHPLAGQGVNLGFADACALSKAIAE 428
Query: 355 GIALGSDIGEVNLLKKYEQERKPANVTMMAILDGFQKAYSIDFGPFNFLRGAAFSGANFV 414
GIALG+DIGE NLLK+YE ERKPAN+ MMA+LDG QK YS+DFGP N LR AAF GA+++
Sbjct: 429 GIALGTDIGEANLLKRYEAERKPANIAMMAVLDGIQKMYSLDFGPLNALRAAAFHGAHYI 488
Query: 415 SPLKRSIISYASGERKLPIF 434
SPLK+ IISYASGE+ LP+F
Sbjct: 489 SPLKKRIISYASGEQSLPLF 508
>At1g24340 unknown protein
Length = 709
Score = 49.7 bits (117), Expect = 3e-06
Identities = 30/78 (38%), Positives = 45/78 (57%), Gaps = 4/78 (5%)
Query: 319 RVVLIGDAAHTIHPLAGQGVNLGFGDAYSLSRVIAEGIALGSDIGEVNLLKKYEQERKPA 378
RV+L GDAAH P G G+N G DA++L+ IA AL ++LK YE ER+P
Sbjct: 363 RVILAGDAAHRFPPAGGFGMNTGIQDAHNLAWKIA---ALVQGSANSSILKTYETERRPI 419
Query: 379 NVTMMAI-LDGFQKAYSI 395
++ ++ + F+ A S+
Sbjct: 420 ALSNTSLSVQNFRAAMSV 437
>At5g67030 zeaxanthin epoxidase
Length = 667
Score = 45.4 bits (106), Expect = 6e-05
Identities = 30/96 (31%), Positives = 48/96 (49%), Gaps = 11/96 (11%)
Query: 319 RVVLIGDAAHTIHPLAGQGVNLGFGDAYSLSRVIAE----GIALGSDIGEVNLLKKYEQE 374
RV L+GD+ H + P GQG + D++ L+ + E + + + V+ LK+YE+
Sbjct: 367 RVTLLGDSIHAMQPNMGQGGCMAIEDSFQLALELDEAWKQSVETTTPVDVVSSLKRYEES 426
Query: 375 RK------PANVTMMAILDGFQKAY-SIDFGPFNFL 403
R+ A M AI+ KAY + GP +FL
Sbjct: 427 RRLRVAIIHAMARMAAIMASTYKAYLGVGLGPLSFL 462
>At2g35660 CTF2A
Length = 439
Score = 43.9 bits (102), Expect = 2e-04
Identities = 61/234 (26%), Positives = 93/234 (39%), Gaps = 41/234 (17%)
Query: 151 LELSDGSSIYAKLVVGADGGKSRVRELAGFKTTGWNYSQNAIICTVEHTSANHCAWQR-- 208
L+L DG+ + A++V+G DG +S+V GF E HCA++
Sbjct: 179 LQLGDGTRLLAQIVIGCDGIRSKVATWMGFS---------------EPKYVGHCAYRGLG 223
Query: 209 FLPNGPIALLPMGENFSNIVWTMSPTESNDRKSITEEMFLKDVNSALDYGYGPHPTSSSL 268
F PNG P + N ++ S T+ + NS GP T ++
Sbjct: 224 FYPNGQ----PFQKKV-NYIYGKGIRAGYVPVSTTKVYWFICFNSP---SLGPKITDPAI 275
Query: 269 ---GARDIFSWLKMDGT----LSANEPFEIPPKAIRLASERMVFPLSLRHANSYATKRVV 321
A+++ S D L+ +E P R + P S RVV
Sbjct: 276 LKKQAKELVSTWPEDLQNLIDLTPDETISRTPLVDRWLWPGIAPPAS--------KGRVV 327
Query: 322 LIGDAAHTIHPLAGQGVNLGFGDAYSLSRVIAEGIALGSDIGEVNLLKKYEQER 375
L+GDA H + P GQG D+ L+ +A I G++ EV ++ Y ER
Sbjct: 328 LVGDAWHPMTPNLGQGACCALEDSVVLANKLANAINGGTESIEV-AMESYGSER 380
>At2g29720 Hydroxylase/Oxygenase (CTF2B)
Length = 427
Score = 43.1 bits (100), Expect = 3e-04
Identities = 63/249 (25%), Positives = 103/249 (41%), Gaps = 43/249 (17%)
Query: 151 LELSDGSSIYAKLVVGADGGKSRVRELAGFKTTGWNYSQNAIICTVEHTSANHCAWQR-- 208
L+L DG+ A +V+G DG +S+V GF E +CA++
Sbjct: 177 LQLKDGTRFLANIVIGCDGIRSKVATWMGFS---------------EPKYVGYCAFRGLG 221
Query: 209 FLPNGPIALLPMGENFSNIVWTMSPTESNDRKSITEEMFLKDVNSALDYGYGPHPTSSSL 268
F PNG P + N ++ S T+ + NS GP ++
Sbjct: 222 FFPNGQ----PFQQKV-NYIFGRGLRAGYVPVSATKVYWFITFNSP---SLGPQMMDPAI 273
Query: 269 GARD----IFSW---LKMDGTLSANEPFEIPPKAIRLASERMVFPLSLRHANSYATKRVV 321
++ + +W L+ L+ +E P A +R ++P A S + RVV
Sbjct: 274 LRKEAKELVSTWPEDLQNLIDLTPDEAISRTPLA-----DRWLWP---GIAPSASKGRVV 325
Query: 322 LIGDAAHTIHPLAGQGVNLGFGDAYSLSRVIAEGIALGSDIGEVNLLKKYEQER--KPAN 379
L+GDA H + P GQG D+ L+ +A I G++ E ++ Y ER +
Sbjct: 326 LVGDAWHPMTPNLGQGACCALEDSVLLANKLASAINGGTESVE-GAMESYRSERWSQVFR 384
Query: 380 VTMMAILDG 388
+T++A L G
Sbjct: 385 LTVLANLVG 393
>At5g05320 monooxygenase
Length = 406
Score = 42.0 bits (97), Expect = 7e-04
Identities = 60/250 (24%), Positives = 93/250 (37%), Gaps = 42/250 (16%)
Query: 146 GHASKLELSDGSSIYAKLVVGADGGKSRVRELAGFKTTGWNYSQNAIICTVEHTSANHCA 205
GH + LSDG+ + K++VG DG KS V + GFK + I + H H
Sbjct: 135 GHYKMVHLSDGTILKTKVLVGCDGVKSVVGKWLGFKNP--VKTSRVAIRGIAHFQTGHEL 192
Query: 206 WQRFLP---NG-PIALLPMGENFSNIVWTMSPTESNDRKSITEEMFLKDVNSALDYGYGP 261
+RF NG + +N + W ++ T ++ K +++ + D P
Sbjct: 193 GRRFFQFYGNGVRSGFISCDQN--TVYWFLTHTSTDLDKKNHQKIKQFVLTKIKDL---P 247
Query: 262 HPTSSSLGARDIFSWLKMDGTLSANEPFEIPPKAIRLASERMVFPLSLRHANSYATKRVV 321
S L D+ S L N PP + A + A V
Sbjct: 248 DNIKSILETTDLDS-------LVMNPLMYRPPWELLWA--------------NIAKDNVC 286
Query: 322 LIGDAAHTIHPLAGQGVNLGFGDAYSLSRVIAEGIALGSDIGEVNLLKKYEQERKPANVT 381
+ GDA H + P GQG + +G+ L +GE K + E + N +
Sbjct: 287 VAGDALHPMTPDIGQGG----------CSAMEDGVILARCLGEAMKAKNMKGETEDENES 336
Query: 382 MMAILDGFQK 391
I DG +K
Sbjct: 337 YRRIEDGLKK 346
>At4g38540 monooxygenase 2 (MO2)
Length = 407
Score = 39.7 bits (91), Expect = 0.003
Identities = 66/270 (24%), Positives = 97/270 (35%), Gaps = 53/270 (19%)
Query: 146 GHASKLELSDGSSIYAKLVVGADGGKSRVRELAGFKTTGWNYSQNAIICTVEHTSANHCA 205
G K+ LSDG+ + K++VG DG S V + GFK + I + H H
Sbjct: 135 GCYKKVHLSDGTILKTKVLVGCDGVYSVVGKWLGFKNPAT--TARLAIRGLTHFPEGHGF 192
Query: 206 WQRFLP----NGPIALLPMGENFSNIVWTMSPTESNDRKSITEEMFLKD--VNSALDYGY 259
+RF +P N + W ++ T S D T LK+ +N D
Sbjct: 193 GKRFFQFYGDGVRSGFIPCDHN--TVYWFLTHT-STDIDEETNSEILKEFVLNKIKDL-- 247
Query: 260 GPHPTSSSLGARDIFSWLKMDGTLSANEPFEIPPKAIRLASERMVFPLSLRHANSYATKR 319
P + + D+ S + L P+E+ I
Sbjct: 248 -PENIKNVVETTDLDSMVMSQ--LKYRPPWELLWSNI-------------------TKDN 285
Query: 320 VVLIGDAAHTIHPLAGQGVNLGFGDAYSLSRVIAEGIALGSDIGEVNL------------ 367
V + GDA H + P GQG D L+R + E I S GE
Sbjct: 286 VCVAGDALHPMTPDIGQGGCSAMEDGVILARCLGEAIKAKSLKGETEENEEEGYKRIEEG 345
Query: 368 LKKYEQERKPANVTMMAILDGFQKAYSIDF 397
LKKY ERK ++ ++ AY++ F
Sbjct: 346 LKKYAGERKWRSIDLIT------TAYTVGF 369
>At1g74470 geranylgeranyl reductase
Length = 467
Score = 37.0 bits (84), Expect = 0.021
Identities = 21/77 (27%), Positives = 36/77 (46%)
Query: 317 TKRVVLIGDAAHTIHPLAGQGVNLGFGDAYSLSRVIAEGIALGSDIGEVNLLKKYEQERK 376
+KRV L+GDAA + +G+G+ + I EG G + + L+KY ++
Sbjct: 325 SKRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEGSQNGKKMIDEGDLRKYLEKWD 384
Query: 377 PANVTMMAILDGFQKAY 393
+ +LD QK +
Sbjct: 385 KTYLPTYRVLDVLQKVF 401
>At1g58440 unknown protein
Length = 531
Score = 37.0 bits (84), Expect = 0.021
Identities = 29/123 (23%), Positives = 48/123 (38%), Gaps = 1/123 (0%)
Query: 312 ANSYATKRVVLIGDAAHTIHPLAGQGVNLGFGDAYSLSRVIAEGIALGSDIGEVNLLKKY 371
A+ Y T +L+GDA + HPL G G+ + D L ++ L L+ +
Sbjct: 334 ASPYPTPGALLMGDAFNMRHPLTGGGMTVALADIVVLRNLLRPLRDLSDGASLCKYLESF 393
Query: 372 EQERKPANVTMMAILDGFQKAY-SIDFGPFNFLRGAAFSGANFVSPLKRSIISYASGERK 430
RKP T+ + + + + S + N +R A F +S SG
Sbjct: 394 YTLRKPVAATINTLANALYQVFCSSENEARNEMREACFDYLGLGGMCTSGPVSLLSGLNP 453
Query: 431 LPI 433
P+
Sbjct: 454 RPL 456
>At5g24150 squalene monooxygenase
Length = 516
Score = 34.3 bits (77), Expect = 0.14
Identities = 20/74 (27%), Positives = 36/74 (48%)
Query: 318 KRVVLIGDAAHTIHPLAGQGVNLGFGDAYSLSRVIAEGIALGSDIGEVNLLKKYEQERKP 377
K V+L+GDA + HP G+ + D L R++ LG+ ++K + RKP
Sbjct: 328 KGVILLGDAFNMRHPAIASGMMVLLSDILILRRLLQPLSNLGNAQKISQVIKSFYDIRKP 387
Query: 378 ANVTMMAILDGFQK 391
+ T+ + + F +
Sbjct: 388 MSATVNTLGNAFSQ 401
>At5g24160 squalene monooxygenase 1,2 (squalene epoxidase 1,2) (se
1,2) (sp|O65402)
Length = 517
Score = 33.1 bits (74), Expect = 0.31
Identities = 23/109 (21%), Positives = 46/109 (42%), Gaps = 7/109 (6%)
Query: 290 EIPPKAIRL-------ASERMVFPLSLRHANSYATKRVVLIGDAAHTIHPLAGQGVNLGF 342
++PPK ++ + V P + K V+++GDA + HP+ G+ +
Sbjct: 294 QVPPKLRKIFLKGIDEGAHIKVVPAKRMTSTLSKKKGVIVLGDAFNMRHPVVASGMMVLL 353
Query: 343 GDAYSLSRVIAEGIALGSDIGEVNLLKKYEQERKPANVTMMAILDGFQK 391
D L R++ LG ++ + RKP + T+ + + F +
Sbjct: 354 SDILILRRLLQPLSNLGDANKVSEVINSFYDIRKPMSATVNTLGNAFSQ 402
>At2g40480 hypothetical protein
Length = 541
Score = 32.7 bits (73), Expect = 0.40
Identities = 26/108 (24%), Positives = 52/108 (48%), Gaps = 9/108 (8%)
Query: 216 ALLPMGENFSNIVWTMSPTESNDRKSITEEMFLKDVNSALDYGYGPHPTSSSLGARDIFS 275
A + +G+ N+V S ES ++K E+ FL+ + L YG+G + + S
Sbjct: 202 AKMNLGKTMDNLVVIQSSVESLNKKMKEEKDFLEKTRAKLTYGFG-----GPVSLAEELS 256
Query: 276 WLKMDGTLSANEPFEIPPKAIRLASERMVFPLSLRHANSYATKRVVLI 323
+K+ + +EP + +++ +E L+L++ NS T + L+
Sbjct: 257 RIKVKPQVQ-DEPLR---EQVKMVAEADETGLNLQNKNSLRTAEMRLV 300
>At2g22830 putative squalene epoxidase
Length = 585
Score = 32.7 bits (73), Expect = 0.40
Identities = 20/82 (24%), Positives = 34/82 (41%)
Query: 312 ANSYATKRVVLIGDAAHTIHPLAGQGVNLGFGDAYSLSRVIAEGIALGSDIGEVNLLKKY 371
A+ T +L+GDA + HPL G G+ + D L ++ L ++ +
Sbjct: 396 ADPIPTPGALLLGDAFNMRHPLTGGGMTVALADIVVLRDLLRPIRNLNDKEALSKYIESF 455
Query: 372 EQERKPANVTMMAILDGFQKAY 393
RKP T+ + D K +
Sbjct: 456 YTLRKPVASTINTLADALYKVF 477
>At1g64170 hypothetical protein
Length = 847
Score = 32.3 bits (72), Expect = 0.53
Identities = 20/74 (27%), Positives = 36/74 (48%)
Query: 294 KAIRLASERMVFPLSLRHANSYATKRVVLIGDAAHTIHPLAGQGVNLGFGDAYSLSRVIA 353
KAI +A+ M+ P + S+A GD + + + GV L L+R++A
Sbjct: 168 KAISIAAAGMLLPFGMGIVTSFAFPEASSSGDNSKVLPFIIFMGVALSITAFGVLARILA 227
Query: 354 EGIALGSDIGEVNL 367
E L +D+G +++
Sbjct: 228 ELKLLTTDLGRISM 241
>At4g37760 unknown protein
Length = 525
Score = 31.2 bits (69), Expect = 1.2
Identities = 19/82 (23%), Positives = 35/82 (42%)
Query: 312 ANSYATKRVVLIGDAAHTIHPLAGQGVNLGFGDAYSLSRVIAEGIALGSDIGEVNLLKKY 371
A+ T +L+GDA + HPL G G+ + D L ++ + L + ++ +
Sbjct: 328 ADPIHTPGALLLGDAFNMRHPLTGGGMTVALSDIVILRDLLNPLVDLTNKESLSKYIESF 387
Query: 372 EQERKPANVTMMAILDGFQKAY 393
RKP T+ + K +
Sbjct: 388 YTLRKPVASTINTLAGALYKVF 409
>At5g24140 squalene monooxygenase 2 (squalene epoxidase 2) (SE 2)
(sp|O65403)
Length = 516
Score = 29.6 bits (65), Expect = 3.4
Identities = 17/72 (23%), Positives = 34/72 (46%)
Query: 320 VVLIGDAAHTIHPLAGQGVNLGFGDAYSLSRVIAEGIALGSDIGEVNLLKKYEQERKPAN 379
V+++GDA + HP+ G+ + D L ++ L + +L+K + RKP +
Sbjct: 330 VIVLGDAFNMRHPIIASGMMVALSDICILRNLLKPLPNLSNTKKVSDLVKSFYIIRKPMS 389
Query: 380 VTMMAILDGFQK 391
T+ + F +
Sbjct: 390 ATVNTLASIFSQ 401
>At4g15760 hypothetical protein
Length = 657
Score = 29.6 bits (65), Expect = 3.4
Identities = 16/46 (34%), Positives = 24/46 (51%), Gaps = 2/46 (4%)
Query: 320 VVLIGDAAHTIHPLAGQGVNLGFGDAYSLSRVIAEGIALGSDIGEV 365
V + GDA H + P QG + DA L+R +A + G D G++
Sbjct: 250 VTVAGDAMHVMGPFLAQGGSAALEDAVVLARCLARKV--GPDHGDL 293
>At5g11330 unknown protein
Length = 408
Score = 28.9 bits (63), Expect = 5.8
Identities = 19/62 (30%), Positives = 31/62 (49%), Gaps = 12/62 (19%)
Query: 320 VVLIGDAAHTIHPLAGQGVNLGFGDAYSLSRVI----AEGIALGSDIGEVNLLKKYEQER 375
+VL+GDAAH P + N+ DA L + + E ++LG L++Y++ R
Sbjct: 310 IVLVGDAAHPTTPHGLRSTNMSILDAEVLGKCLENCGPENVSLG--------LEEYQRIR 361
Query: 376 KP 377
P
Sbjct: 362 LP 363
>At2g29760 hypothetical protein
Length = 738
Score = 28.5 bits (62), Expect = 7.6
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 344 DAYSLSRVIAEGIALGSDIGEVNLLKKYEQER-KPANVTMMAILDGFQKAYSIDFG 398
D S + +I + GS + L KK E E K ++VTM+ +L K +++FG
Sbjct: 196 DVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFG 251
>At1g22440 Very similar to alcohol dehydrogenase
Length = 386
Score = 28.5 bits (62), Expect = 7.6
Identities = 21/72 (29%), Positives = 36/72 (49%), Gaps = 6/72 (8%)
Query: 347 SLSRVIAEGIALGSD-----IGEVNLLKKYEQERKPANVTMMAILDGFQKAYSIDFGPFN 401
++S VI E +G+D IG +L+++ + +P + + +L QKA I G ++
Sbjct: 259 TISEVIREMTDVGADYSFECIGLASLMEEAFKSTRPGSGKTI-VLGMEQKALPISLGSYD 317
Query: 402 FLRGAAFSGANF 413
LRG G F
Sbjct: 318 LLRGRTVCGTLF 329
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.317 0.133 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,187,889
Number of Sequences: 26719
Number of extensions: 444322
Number of successful extensions: 1002
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 974
Number of HSP's gapped (non-prelim): 29
length of query: 435
length of database: 11,318,596
effective HSP length: 102
effective length of query: 333
effective length of database: 8,593,258
effective search space: 2861554914
effective search space used: 2861554914
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Medicago: description of AC121242.7