BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC121242.1 + phase: 0 /pseudo
         (403 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At4g08050                                                             179  3e-45
At3g30655 hypothetical protein, 3' partial                            178  5e-45
At2g10670 pseudogene                                                  176  2e-44
At1g41690 hypothetical protein                                        170  1e-42
At2g06160 putative Athila retroelement ORF1 protein                   167  9e-42
At2g07480 F9A16.15                                                    167  1e-41
At4g07640 putative athila transposon protein                          166  3e-41
At3g32000 unknown protein                                             166  3e-41
At3g30630 hypothetical protein                                        159  3e-39
At4g07780 putative athila transposon protein                          158  4e-39
At1g37060 Athila retroelment ORF 1, putative                          156  2e-38
At3g32890 Athila ORF 1, putative                                      155  3e-38
At1g38440 hypothetical protein                                        155  5e-38
At4g07620 putative athila transposon protein                          150  1e-36
At3g31340 Athila ORF 1, putative                                      148  5e-36
At2g13260 putative Athila retroelement ORF1 protein                   142  3e-34
At2g06310 putative Athila retroelement ORF1 protein                   124  1e-28
At1g36130 hypothetical protein                                        110  1e-24
At4g07360                                                             100  2e-21
At2g06110 putative Athila retroelement ORF1 protein                    94  1e-19

>At4g08050
          Length = 1428

 Score =  179 bits (453), Expect = 3e-45
 Identities = 114/350 (32%), Positives = 177/350 (50%), Gaps = 26/350 (7%)

Query: 21  IVYPTVAGNNFEIKPALLNLVQQNQFSGSPTEDPNLHISSFLRLSGTIKEN---QEAVRL 77
           I  P +  NNFEIK  L++++Q N+F G P EDP  H+  F RL    K N   ++  +L
Sbjct: 29  IAPPAIQNNNFEIKSGLISMIQGNKFHGLPMEDPLDHLDEFDRLCNLTKINGVSEDGFKL 88

Query: 78  HLFPFSLRDRASAWFHSLEVGSITSWDDMRRAFLARFFPPSKTAKLRDQITRFNQKDGES 137
            LFPFSL D+A  W  +L   SIT+WDD ++AFL++FF  ++TA+LR++I  F+QK GES
Sbjct: 89  RLFPFSLGDKAHIWEKNLSHDSITTWDDYKKAFLSKFFSNARTARLRNEIYGFSQKTGES 148

Query: 138 LYEAWERFKEMLRLCPHHGLEKWLIVHTFYNGLSYTTKMSVDAAAGGALMNKNYTEAYAL 197
             EAWERFK     CPHH   K  ++ T Y G+    +M +D A+ G   NK+  E + L
Sbjct: 149 FCEAWERFKGYTNQCPHHSFTKASLLSTLYRGVLPRIRMLLDTASNGNFQNKDVEEGWEL 208

Query: 198 IEDMAQN--HYQWTNERAVTTPTPFKKEAGIYEVSEYNHLAAKVEALTQKIEKL---NVK 252
           +E++AQ+  +Y    +R V               S+  H   +++AL  K++++     K
Sbjct: 209 VENLAQSDGNYNEDCDRTVRGTAD----------SDDKH-RKEIKALNDKLDRILLSQQK 257

Query: 253 AVPPSSASPPCEVCGITGHIGVDCQLGSAANIEQLNYAQYNQGMRPNQNFYKNPQGSYGQ 312
            V         +V    G+   +  L      +   +  YNQG  P Q F    QG+Y  
Sbjct: 258 HVHFLVDDEQYQVQDGEGNQLEEVYLPQQKQGQNKPFVLYNQGFVPKQQF----QGNYQP 313

Query: 313 AAPPGYTNNQ---RVAQKSSLEILLENCIANQNKNLQELKNQTGFLNDSL 359
             PPG+   Q     A  + ++ +++  +  Q  +  E+  +   L+  L
Sbjct: 314 PPPPGFVTQQNQCHAAPDAKMKQMVKQLLQGQASSSMEIAKKLSELHHKL 363


>At3g30655 hypothetical protein, 3' partial
          Length = 660

 Score =  178 bits (451), Expect = 5e-45
 Identities = 124/377 (32%), Positives = 183/377 (47%), Gaps = 46/377 (12%)

Query: 24  PTVAGNNFEIKPALLNLVQQNQFSGSPTEDPNLHISSFLRLSGTIKEN---QEAVRLHLF 80
           P V  NNFEIK  L+ +VQ N+F G P EDP  H+  F RL G  K N   ++  +L LF
Sbjct: 32  PPVQNNNFEIKSGLIAMVQGNKFHGLPMEDPLDHLDEFERLYGLTKINGVSEDGFKLRLF 91

Query: 81  PFSLRDRASAWFHSLEVGSITSWDDMRRAFLARFFPPSKTAKLRDQITRFNQKDGESLYE 140
           PFSL D+A  W  +L   SIT+WDD ++AFLA+FF  S+TA+LR++I+ F QK  ES  E
Sbjct: 92  PFSLGDKAHLWEKTLPQNSITAWDDCKKAFLAKFFSNSRTARLRNEISGFTQKQNESFGE 151

Query: 141 AWERFKEMLRLCPHHGLEKWLIVHTFYNGLSYTTKMSVDAAAGGALMNKNYTEAYALIED 200
           AWERFK     CPHHG ++  ++ T Y G+    ++ +D A+ G  + K+  E + L+E+
Sbjct: 152 AWERFKGYQTKCPHHGFKQASLLSTLYRGVLPKIRILLDTASNGNFLKKDVEEGWELVEN 211

Query: 201 MAQN--HYQWTNERAVTTPTPFKKEAGIYEVSEYNHLAAKVEALTQK----IEKLNVKAV 254
            AQ+  +Y    +R++ T +    +    E+   N    K+  + QK    I +     V
Sbjct: 212 FAQSDGNYNEDYDRSIRTSSD-SNDKHDREMKALNDKLEKIVQMQQKHVHFISEDEPFPV 270

Query: 255 PPSSASPPCEVCGITGHIG-------------VDCQLGSAANIEQLNYAQ---------- 291
                    E+  +    G             +  +  + AN +   YAQ          
Sbjct: 271 QEGEKDQWAEISYVQNQGGYNKGYNYYRPNPNLSYRSTNVANPQDQVYAQQQQQQNQPKP 330

Query: 292 -----YNQGMRPNQNFYKNPQGSYGQAAP-PGYTNNQRVA---QKSSLEILLENCIANQN 342
                 NQG  P Q F    QG Y Q  P PG+T  Q+ A   Q S + I+L+  I  Q 
Sbjct: 331 FVPYNQNQGFIPKQQF----QGGYQQQQPQPGFTPQQQHAPAPQNSDIMIMLQQLIQGQA 386

Query: 343 KNLQELKNQTGFLNDSL 359
               E+  +   +N+ +
Sbjct: 387 TGAMEIAKKLCEVNNKI 403


>At2g10670 pseudogene
          Length = 929

 Score =  176 bits (447), Expect = 2e-44
 Identities = 123/363 (33%), Positives = 184/363 (49%), Gaps = 39/363 (10%)

Query: 21  IVYPTVAGNNFEIKPALLNLVQQNQFSGSPTEDPNLHISSFLRLSGTIKEN---QEAVRL 77
           IV   V  NNF+IK  L+ +VQ N+F G P EDP  H+    RL G  K N   ++  +L
Sbjct: 61  IVLRPVQNNNFKIKSGLIAMVQGNKFHGLPMEDPLDHLDELERLCGLTKINGVSEDGFKL 120

Query: 78  HLFPFSLRDRASAWFHSLEVGSITSWDDMRRAFLARFFPPSKTAKLRDQITRFNQKDGES 137
            LFPFSL D+A  W  +L   SIT+WDD + AFLA+FF  S+TA+LR++I+ F  K  ES
Sbjct: 121 RLFPFSLGDKAHLWEKTLPKNSITTWDDCKMAFLAKFFSNSRTARLRNEISGFTLKQNES 180

Query: 138 LYEAWERFKEMLRLCPHHGLEKWLIVHTFYNGLSYTTKMSVDAAAGGALMNKNYTEAYAL 197
             EAWERFK     CPHHG  +  +++T Y G+    +M +D A+ G  + K+  E + L
Sbjct: 181 FCEAWERFKGYQTKCPHHGFSQASLLNTLYRGVLPKIRMLLDTASNGNFLKKDIEEGWEL 240

Query: 198 IEDMAQN--HYQWTNERAVTTPTPFKKEAGIYEVSEYNHLAAKVEALTQKIEK---LNVK 252
           +E++AQ+  +Y     R++ T +            + +H   +++AL  K++K   +  K
Sbjct: 241 VENLAQSGGNYNEDYGRSIYTSS---------NTDDKHH--REMKALNDKLDKIIQMQQK 289

Query: 253 AVPPSSASPPCEV-------CGITGHI---GVDCQLGSAANIEQLNYAQYNQ--GMRPNQ 300
            V   S   P +V       C    ++   G      +AA      +  YNQ  G  P Q
Sbjct: 290 HVHFISEDEPFQVQEGENDQCAEIRYVHNQGPSLPSAAAAAEPTKPFVPYNQSLGFVPKQ 349

Query: 301 NFYKNPQGSY-GQAAPPGYTNNQRVA---QKSSLEILLENCIANQNKNLQELKNQTGFLN 356
            F    QG Y  Q  PPG+T +Q+ A   Q S +  +L+  I  Q     E+  +   +N
Sbjct: 350 QF----QGGYQQQQPPPGFTPHQQQAHAPQNSDIMTVLQQLIQGQATGAMEIAKKLSKVN 405

Query: 357 DSL 359
           + +
Sbjct: 406 NKV 408


>At1g41690 hypothetical protein
          Length = 371

 Score =  170 bits (431), Expect = 1e-42
 Identities = 89/201 (44%), Positives = 125/201 (61%), Gaps = 5/201 (2%)

Query: 21  IVYPTVAGNNFEIKPALLNLVQQNQFSGSPTEDPNLHISSFLRLSGTIKEN---QEAVRL 77
           IV P V  NNFEIK +L+ +VQ N+F G P EDP  H+  F RL    K N   ++  +L
Sbjct: 29  IVPPPVQNNNFEIKSSLIAMVQGNKFHGLPMEDPLDHLDEFERLCSLTKINGVSEDGFKL 88

Query: 78  HLFPFSLRDRASAWFHSLEVGSITSWDDMRRAFLARFFPPSKTAKLRDQITRFNQKDGES 137
            LFPFSL D+A  W  +L  GSIT+WDD ++AFLA+FF  S+TA+LR++I+ F QK  ES
Sbjct: 89  RLFPFSLGDKAHLWEKTLPQGSITTWDDCKKAFLAKFFSYSRTARLRNEISGFTQKQSES 148

Query: 138 LYEAWERFKEMLRLCPHHGLEKWLIVHTFYNGLSYTTKMSVDAAAGGALMNKNYTEAYAL 197
             EAWERFK     CPHHG ++  ++ T Y G+    +M +D A+ G  + K+  E + L
Sbjct: 149 FCEAWERFKGYQTKCPHHGFKQASLLSTLYRGVLPKIRMLLDTASNGNFLKKDVEEGWEL 208

Query: 198 IEDMAQN--HYQWTNERAVTT 216
           +E  AQ+  +Y    +R++ T
Sbjct: 209 VEKFAQSDGNYNEDYDRSIRT 229


>At2g06160 putative Athila retroelement ORF1 protein
          Length = 750

 Score =  167 bits (423), Expect = 9e-42
 Identities = 105/297 (35%), Positives = 157/297 (52%), Gaps = 27/297 (9%)

Query: 21  IVYPTVAGNNFEIKPALLNLVQQNQFSGSPTEDPNLHISSFLRLSGTIKEN---QEAVRL 77
           IV P V  NNFEIK  L+ +VQ N+F G P ED   H+  F RL    K N   ++  + 
Sbjct: 29  IVLPLVQNNNFEIKSGLIAMVQGNKFHGLPMEDSLDHLDEFERLCDLTKINGVSEDGFKF 88

Query: 78  HLFPFSLRDRASAWFHSLEVGSITSWDDMRRAFLARFFPPSKTAKLRDQITRFNQKDGES 137
            LFPFSL D+   W  +L   SIT+WDD ++AF A+FF  S+TA+LR++I+ F QK  ES
Sbjct: 89  RLFPFSLGDKTHLWEKTLPQNSITTWDDCKKAFFAKFFSNSRTARLRNEISGFTQKQNES 148

Query: 138 LYEAWERFKEMLRLCPHHGLEKWLIVHTFYNGLSYTTKMSVDAAAGGALMNKNYTEAYAL 197
             EAWERFK     CPH G ++  ++ T Y G+    +M +D A+ G  +NK+  + + L
Sbjct: 149 FCEAWERFKGYQTKCPHPGFKQASLLSTLYRGVLPKLRMLLDTASNGNFLNKDVEKGWEL 208

Query: 198 IEDMAQN--HYQWTNERAVTTPTPFKKEAGIYEVSEYNHLAAKVEALTQKIEK-LNVKAV 254
           +E++AQ+  +Y    +++++T +         E  + +H   +++AL  KI+K L V+  
Sbjct: 209 VENLAQSDGNYNENYDKSISTSS---------ESDDKHH--REIKALNDKIDKLLQVQQK 257

Query: 255 PPSSASPPCEVCGITGHIGVDCQLGSAANIEQLNYAQYNQGMRPNQNFYK-NPQGSY 310
               AS          H     Q G      +++Y Q   G     N Y+ NP  SY
Sbjct: 258 HVHFASE---------HEVFQIQEGENDQCAEISYVQNQDGYNKGYNNYRPNPNLSY 305


>At2g07480 F9A16.15
          Length = 1012

 Score =  167 bits (422), Expect = 1e-41
 Identities = 109/304 (35%), Positives = 157/304 (50%), Gaps = 35/304 (11%)

Query: 12  PSTEEPQAIIVYPTVAGNNFEIKPALLNLVQQNQFSGSPTEDPNLHISSFLRLSGTIKEN 71
           P     +A IV P +  NNF+IK  L++++Q N+F G P EDP  H+ +F RL    K N
Sbjct: 15  PRNHHQRAGIVPPPIQNNNFKIKSDLISMIQGNKFHGLPMEDPLDHLDNFDRLCSLTKIN 74

Query: 72  ---QEAVRLHLFPFSLRDRASAWFHSLEVGSITSWDDMRRAFLARFFPPSKTAKLRDQIT 128
              +E+ +L LFPFSL D+A  W  +L V SI +WDD ++AFLA+FF  S+ A+LR +I+
Sbjct: 75  GVSEESFKLRLFPFSLGDKAHLWEKTLPVKSIDTWDDCKKAFLAKFFSNSRKARLRSEIS 134

Query: 129 RFNQKDGESLYEAWERFKEMLRLCPHHGLEKWLIVHTFYNGLSYTTKMSVDAAAGGALMN 188
            FNQK+ ES  EAWERFK     CPHH  E     ++    L    +M +D A+ G ++N
Sbjct: 135 GFNQKNSESFSEAWERFKGYTTQCPHH--ESLPPQYSILRCLP-KIRMLLDTASNGNILN 191

Query: 189 KNYTEAYALIEDMAQNH------YQWTNERAVTTPTPFKKEAGIYEVSEYNHLAAKVEAL 242
           K+  E + L+E++AQ+H      Y  TN  +  +    KKE               ++ L
Sbjct: 192 KDVAEGWELVENLAQSHRNYNEDYDRTNRGSSDSEDKHKKE---------------IKTL 236

Query: 243 TQKIEKLNVKAVPPSSASPPCEVCGITGHIGVDCQLGSAANIEQLNYAQYNQGMRPNQNF 302
             +I+KL +        +    V  IT       Q G    IE+++Y Q   G     N 
Sbjct: 237 NDRIDKLVL--------AQQRNVYYITEEELTQLQDGENLTIEEVSYLQNQGGYNKGFNN 288

Query: 303 YKNP 306
           YK P
Sbjct: 289 YKPP 292


>At4g07640 putative athila transposon protein
          Length = 866

 Score =  166 bits (419), Expect = 3e-41
 Identities = 102/297 (34%), Positives = 156/297 (52%), Gaps = 26/297 (8%)

Query: 21  IVYPTVAGNNFEIKPALLNLVQQNQFSGSPTEDPNLHISSFLRLSGTIKEN---QEAVRL 77
           I  P +  NNFEIK  L++++Q N+F G P EDP  H+  F RL    K N    +  +L
Sbjct: 29  IAPPAIQNNNFEIKSGLISMIQGNKFYGLPMEDPLDHLDEFDRLCNLTKINGVSADGFKL 88

Query: 78  HLFPFSLRDRASAWFHSLEVGSITSWDDMRRAFLARFFPPSKTAKLRDQITRFNQKDGES 137
            LFPFSL D+A  W  +L   SI +WDD ++AFL++FF  ++TA+LR++I+ F+QK GES
Sbjct: 89  RLFPFSLGDKAHIWEKNLPHDSIITWDDCKKAFLSKFFSNARTARLRNEISGFSQKTGES 148

Query: 138 LYEAWERFKEMLRLCPHHGLEKWLIVHTFYNGLSYTTKMSVDAAAGGALMNKNYTEAYAL 197
             EAWERFK     CPHHG  K  ++ T Y G+    +M +D A+ G   NK+  E + L
Sbjct: 149 FCEAWERFKGYTNQCPHHGFTKASMLSTLYRGVLPRIRMLLDTASNGNFQNKDVEEGWEL 208

Query: 198 IEDMAQN--HYQWTNERAVTTPTPFKKEAGIYEVSEYNHLAAKVEALTQKIEKLNVKAVP 255
           ++++AQ+  +Y    +R V               S+  H   +++AL  K++++ +    
Sbjct: 209 VDNLAQSDGNYNEDCDRTVRDTAD----------SDDKH-RKEIKALNDKLDRILL---- 253

Query: 256 PSSASPPCEVCGITGHIGVDCQLGSAANIEQLNYAQYNQGMRPNQNFYK--NPQGSY 310
               +    V  +        Q G    +E+++Y   NQ      N +K  NP  SY
Sbjct: 254 ----NQQKHVHFLVDDEQFQVQDGEGNQLEEVSYINNNQSGYKGYNNFKTNNPNLSY 306


>At3g32000 unknown protein
          Length = 839

 Score =  166 bits (419), Expect = 3e-41
 Identities = 104/297 (35%), Positives = 157/297 (52%), Gaps = 26/297 (8%)

Query: 21  IVYPTVAGNNFEIKPALLNLVQQNQFSGSPTEDPNLHISSFLRLSGTIKEN---QEAVRL 77
           I  P +  NNFEIK  L++++Q N+F G P EDP  H+  F RL    K N   +   +L
Sbjct: 29  IAPPAIQKNNFEIKSGLISMIQGNKFHGLPMEDPLDHLDEFDRLCNLTKINGVSENGFKL 88

Query: 78  HLFPFSLRDRASAWFHSLEVGSITSWDDMRRAFLARFFPPSKTAKLRDQITRFNQKDGES 137
            LFPFSL D+A  W  +L   SIT+ DD ++AFL++FF   +TA+LR++I+ F+QK GES
Sbjct: 89  RLFPFSLGDKALIWEMNLPHDSITTRDDCKKAFLSKFFSNDRTARLRNEISGFSQKIGES 148

Query: 138 LYEAWERFKEMLRLCPHHGLEKWLIVHTFYNGLSYTTKMSVDAAAGGALMNKNYTEAYAL 197
             EAWERFK+    CPHHG  K  ++ T Y G+    +M +D A+ G   NK+  E + L
Sbjct: 149 FCEAWERFKDYTNQCPHHGFTKASLLSTLYRGVLPRIRMLLDTASNGNFQNKDVEEGWEL 208

Query: 198 IEDMAQN--HYQWTNERAVTTPTPFKKEAGIYEVSEYNHLAAKVEALTQKIEKLNVKAVP 255
           ++++AQ+  +Y    +R V               S+  H   +++AL  K++++ +    
Sbjct: 209 VDNLAQSDGNYNEDCDRTVRGTAD----------SDDKH-RKEIKALNDKLDRILL---- 253

Query: 256 PSSASPPCEVCGITGHIGVDCQLGSAANIEQLNYAQYNQGMRPNQNFYK--NPQGSY 310
               S    V  +        Q G    +E+++Y   NQG     N +K  NP  SY
Sbjct: 254 ----SQQKHVDFLVDDEQYQVQDGEGNQLEEVSYINNNQGGYKGYNNFKTNNPNLSY 306



 Score = 28.5 bits (62), Expect = 6.9
 Identities = 22/62 (35%), Positives = 33/62 (52%), Gaps = 5/62 (8%)

Query: 232 YNHLAAKVEALTQKIEKLNVKAVPPSSASPPCEVCGITGHIGVDCQLGSAANIEQLNYAQ 291
           YN L AKVEAL  K+  L  ++   +S S P +V G+ G    D Q G A    +++  +
Sbjct: 404 YNDLNAKVEALNTKVRYLEGQS---ASTSAP-KVTGLPGK-DSDVQEGEAFTQVEVSVVE 458

Query: 292 YN 293
           +N
Sbjct: 459 FN 460


>At3g30630 hypothetical protein
          Length = 785

 Score =  159 bits (402), Expect = 3e-39
 Identities = 102/296 (34%), Positives = 153/296 (51%), Gaps = 25/296 (8%)

Query: 21  IVYPTVAGNNFEIKPALLNLVQQNQFSGSPTEDPNLHISSFLRLSGTIKEN---QEAVRL 77
           I  PT+  NNF+IK  L++++Q N+F G P ED   H+  F RL    K N   ++  +L
Sbjct: 29  IAPPTIQNNNFKIKSGLISMIQGNKFHGLPMEDLLDHLDEFDRLCNLTKVNGVSEDGFKL 88

Query: 78  HLFPFSLRDRASAWFHSLEVGSITSWDDMRRAFLARFFPPSKTAKLRDQITRFNQKDGES 137
            LFPF L D+A  W  ++   SI +W D ++AFLA+FF  +KTA+L ++I+ F+QK GES
Sbjct: 89  RLFPFFLGDKAHIWEKNMPHDSIITWVDCKKAFLAKFFSNAKTARLINEISSFSQKTGES 148

Query: 138 LYEAWERFKEMLRLCPHHGLEKWLIVHTFYNGLSYTTKMSVDAAAGGALMNKNYTEAYAL 197
             EAWERFK     CPHHG +K  ++ T Y G+    +M +D A+     NK+  E + L
Sbjct: 149 FCEAWERFKGYTNQCPHHGFKKASLLSTLYRGVLPRIRMLLDTASNENFQNKDVEEGWEL 208

Query: 198 IEDMAQ--NHYQWTNERAVTTPTPFKKEAGIYEVSEYNHLAAKVEALTQKIEKLNVKAVP 255
           IE++AQ  ++Y    ER +   T           S+  H   +++AL  K +K+ +    
Sbjct: 209 IENLAQSNDNYNKDCERTIRGTTD----------SDDKH-RKEIKALNDKQDKILL---- 253

Query: 256 PSSASPPCEVCGITGHIGVDCQLGSAANIEQLNYAQYNQGMRPNQNF-YKNPQGSY 310
               S    V  +        Q G    +E+++Y     G +   NF   NP  SY
Sbjct: 254 ----SQQKHVHFLVDDEQYQVQDGEGNQLEEVSYINNQSGYKGYNNFKTNNPNLSY 305


>At4g07780 putative athila transposon protein
          Length = 446

 Score =  158 bits (400), Expect = 4e-39
 Identities = 100/292 (34%), Positives = 155/292 (52%), Gaps = 13/292 (4%)

Query: 12  PSTEEPQAIIVYPTVAGNNFEIKPALLNLVQQNQFSGSPTEDPNLHISSFLRLSGTIKEN 71
           P     +  IV P V  NNFEI   L++++Q N+F G P EDP  ++ SF RL G  K N
Sbjct: 28  PRNHHQRQGIVPPPVQINNFEIMSGLISMIQGNKFHGLPKEDPLDNLDSFDRLCGLTKIN 87

Query: 72  ---QEAVRLHLFPFSLRDRASAWFHSLEVGSITSWDDMRRAFLARFFPPSKTAKLRDQIT 128
              ++  +L LFPFSL D+A  W  +L   SITSWDD ++ FLA+FF  ++TA+LR++I+
Sbjct: 88  GVTKDMFKLRLFPFSLGDKAHHWKKTLPPDSITSWDDCKKDFLAKFFSNARTARLRNEIS 147

Query: 129 RFNQKDGESLYEAWERFKEMLRLCPHHGLEKWLIVHTFYNGLSYTTKMSVDAAAGGALMN 188
            F QK+ E+ +EA ERFK     CPHHG +K  ++ T Y G     +M +D  + G  +N
Sbjct: 148 GFTQKNNETFFEASERFKSYTTYCPHHGFKKASLLRTLYRGALPKIRMLLDTTSNGNFLN 207

Query: 189 KNYTEAY-----ALIEDMAQNHYQWTNERAVTTPTPF-KKEAGIYEVSEYNHLAAKVEAL 242
            +  E +       I+  A   + WT E      T   +K+  I ++ +  +        
Sbjct: 208 NDVAEGWERGDSTQIDAPATQQFIWTIEHTPLLNTHHSRKKFKIEKLKKDQNQEMISRVS 267

Query: 243 TQKIEK---LNVKAVPPSSASPPCEVCGITGHIGVDCQLGSAANIEQLNYAQ 291
           TQ+  K   +  K   P S + PC +  +T +  + C LG++ ++  L+ A+
Sbjct: 268 TQETYKKKFIQEKLDDPGSFTLPCSLGPLTFNRCL-CDLGASVSLMPLSTAK 318


>At1g37060 Athila retroelment ORF 1, putative
          Length = 1734

 Score =  156 bits (394), Expect = 2e-38
 Identities = 101/297 (34%), Positives = 153/297 (51%), Gaps = 45/297 (15%)

Query: 21  IVYPTVAGNNFEIKPALLNLVQQNQFSGSPTEDPNLHISSFLRLSGTIKEN---QEAVRL 77
           IV P V  NNFEIK  L+ +VQ N+F G P EDP  H+  F RL    K N   ++  +L
Sbjct: 29  IVPPPVQNNNFEIKSGLIAMVQSNKFHGLPMEDPLDHLDEFDRLCSLTKINRVSEDGFKL 88

Query: 78  HLFPFSLRDRASAWFHSLEVGSITSWDDMRRAFLARFFPPSKTAKLRDQITRFNQKDGES 137
            LFPFSL D+A  W  SL  GSITSW+D ++AFLA+FF  S+TA+LR+ I+ F Q + E+
Sbjct: 89  RLFPFSLGDKAHQWEKSLPQGSITSWNDCKKAFLAKFFSNSRTARLRNDISGFTQTNNET 148

Query: 138 LYEAWERFKEMLRLCPHHGLEKWLIVHTFYNGLSYTTKMSVDAAAGGALMNKNYTEAYAL 197
            YEAWERFK     CPHH                   +M +D A+ G  +NK+  + + +
Sbjct: 149 FYEAWERFKGYQTQCPHH-------------------EMLLDTASNGNFLNKDVEDGWEV 189

Query: 198 IEDMAQN--HYQWTNERAVTTPTPFKKEAGIYEVSEYNHLAAKVEALTQKIEKLNVKAVP 255
           +E++AQ+  +Y    +R++ T +           S+  H   +++A+  K++KL +    
Sbjct: 190 VENLAQSDGNYNEDYDRSIRTSSD----------SDEKH-RREMKAMNDKLDKLLLMQQK 238

Query: 256 PSSASPPCEVCGITGHIGVDCQLGSAANIEQLNYAQYNQGMRPNQNFYK--NPQGSY 310
                    +  +     +  Q G    +E+++Y Q   G     N +K  +P  SY
Sbjct: 239 --------HIHFLGDDETLQVQDGETLQLEEVSYVQNQGGYNKGFNNFKQNHPNLSY 287


>At3g32890 Athila ORF 1, putative
          Length = 755

 Score =  155 bits (393), Expect = 3e-38
 Identities = 101/338 (29%), Positives = 165/338 (47%), Gaps = 22/338 (6%)

Query: 40  LVQQNQFSGSPTEDPNLHISSFLRLSGTIKEN---QEAVRLHLFPFSLRDRASAWFHSLE 96
           ++Q N+F G P EDP  H+  F RL    K N   ++  +L LFPFSL D+A  W  +L 
Sbjct: 1   MIQGNKFHGLPMEDPLDHLDEFDRLYNLTKINGVSEDGFKLRLFPFSLGDKAHIWEKNLP 60

Query: 97  VGSITSWDDMRRAFLARFFPPSKTAKLRDQITRFNQKDGESLYEAWERFKEMLRLCPHHG 156
             SIT+WDD ++AFL++FF  ++TA+LR++I+ F+QK  ES  EAWERFK     CPHHG
Sbjct: 61  HDSITTWDDCKKAFLSKFFSNARTARLRNEISGFSQKTRESFCEAWERFKGYTNQCPHHG 120

Query: 157 LEKWLIVHTFYNGLSYTTKMSVDAAAGGALMNKNYTEAYALIEDMAQNHYQWTNERAVTT 216
             K  ++ T Y G+    +M +D ++ G   NK+  E + L+E++AQ+   +  +     
Sbjct: 121 FTKASLLSTLYRGVLLRIRMLLDTSSNGNFQNKDVEEGWELVENLAQSDGNYNEDCDRNE 180

Query: 217 PTPFKKEAGIYEVSEYNHLAAKVEALTQKI------EKLNVKAVPPSSASPPCEVCGITG 270
                 +  +  +S+  H+   V+    ++      +   V  +  +           T 
Sbjct: 181 IKALNDKLDMILLSQQKHVHFLVDDKQFQVQYGEGNQLEEVSYIINNQGGYKGYNNFKTN 240

Query: 271 HIGVDCQLGSAANIEQLNYAQ------YNQGMRPNQNFYKNPQGSYGQAAPPGYTNNQR- 323
           +  +  +  + AN  Q    Q      YNQG  P Q F    QG+Y    PPG+T  Q  
Sbjct: 241 NPNLSYRSTNVANPPQQQQGQNKPFVPYNQGFVPKQQF----QGNYQPPPPPGFTTQQNQ 296

Query: 324 --VAQKSSLEILLENCIANQNKNLQELKNQTGFLNDSL 359
              A  + ++ +++  +  Q  +  E+  +   L+  L
Sbjct: 297 GPAAPDAEMKQMVQQLLEVQASSSMEIAKKLSELHHKL 334


>At1g38440 hypothetical protein
          Length = 263

 Score =  155 bits (391), Expect = 5e-38
 Identities = 94/276 (34%), Positives = 148/276 (53%), Gaps = 22/276 (7%)

Query: 40  LVQQNQFSGSPTEDPNLHISSFLRLSGTIKEN---QEAVRLHLFPFSLRDRASAWFHSLE 96
           ++Q+N+F G P EDP  H+  F RL    K N   ++  +L LFPFSL D+A  W  +L 
Sbjct: 1   MIQENKFHGLPMEDPLDHLDEFDRLYNLTKINGVSEDGFKLRLFPFSLGDKAHIWEKNLP 60

Query: 97  VGSITSWDDMRRAFLARFFPPSKTAKLRDQITRFNQKDGESLYEAWERFKEMLRLCPHHG 156
             SIT+WDD ++AFL++FF  ++TA+LR++I+ F+QK  ES  EAWERFK     CPHHG
Sbjct: 61  HDSITTWDDCKKAFLSKFFSNARTARLRNEISGFSQKTSESFCEAWERFKGYTNQCPHHG 120

Query: 157 LEKWLIVHTFYNGLSYTTKMSVDAAAGGALMNKNYTEAYALIEDMAQNHYQWTNERAVTT 216
             K  ++ T Y G+     M +DAA+ G   NK+  E + L+E++AQ++  +  +   T 
Sbjct: 121 FTKASLLSTLYRGVLPCIIMLLDAASNGNFQNKDVEEGWELVENLAQSYGNYNEDCDRTV 180

Query: 217 PTPFKKEAGIYEVSEYNHLAAKVEALTQKIEKLNVKAVPPSSASPPCEVCGITGHIGVDC 276
                   G  + ++ +    +++AL  K++++ +        S    V  +        
Sbjct: 181 -------RGTADSNDKHR--KEIKALNDKLDRIFL--------SQQKHVHFLVDDKQFQV 223

Query: 277 QLGSAANIEQLNYAQYNQGMRPNQNFYK--NPQGSY 310
           Q G    +E+++Y   NQG     N +K  NP  SY
Sbjct: 224 QDGEGNQLEEVSYINNNQGGYKGYNNFKTNNPNLSY 259


>At4g07620 putative athila transposon protein
          Length = 683

 Score =  150 bits (379), Expect = 1e-36
 Identities = 111/361 (30%), Positives = 164/361 (44%), Gaps = 76/361 (21%)

Query: 12  PSTEEPQAIIVYPTVAGNNFEIKPALLNLVQQNQFSGSPTEDPNLHISSFLRLSGTIKEN 71
           P     +  IV P V  NNFEIK  L++ +Q N+F G P EDP  H+ SF RL G  K N
Sbjct: 28  PRNHHQRQGIVPPPVQNNNFEIKSGLISKIQGNKFHGLPMEDPLDHLDSFDRLCGLTKIN 87

Query: 72  QEAVRLHLFPFSLRDRASAWFHSLEVGSITSWDDMRRAFLARFFPPSKTAKLRDQITRFN 131
                                       I SWDD ++ FLA+FF   +TA+LR++I+ FN
Sbjct: 88  D--------------------------FINSWDDCKKVFLAKFFSNVRTARLRNEISGFN 121

Query: 132 QKDGESLYEAWERFKEMLRLCPHHGLEKWLIVHTFYNGLSYTTKMSVDAAAGGALMNKNY 191
           QK+ E+  EAWERFK     CPHHG +K  ++ T Y G     +M +D  + G  +NK+ 
Sbjct: 122 QKNNETFCEAWERFKSYTTQCPHHGFKKASLLSTLYRGALPKIRMLLDTPSNGNFLNKDV 181

Query: 192 TEAYALIEDMAQNH--YQWTNERAVTTPTPFKKEAGIYEVSEYNHLAAKVEALTQKIEKL 249
            E + L+E++AQ+   Y    +R+V       +  G  E  +    +  ++AL +K   +
Sbjct: 182 EEGWELVENLAQSDGCYNEDYDRSV-------RGTGGSEDKQ----SKDIKALNEKSTNV 230

Query: 250 NVKAVPPSSASPPCEVCGITGHIGVDCQLGSAANIEQLNYAQYNQGMRPNQNFYKNPQGS 309
              A P     PP                      +   + QYNQG  P Q F     G 
Sbjct: 231 ---ANPQDKVYPP-------------------QQNQSKPFVQYNQGYVPKQQF----NGG 264

Query: 310 YGQA-APPGYTNNQR---VAQKSSLEILLENCIANQ-------NKNLQELKNQTGFLNDS 358
           Y Q  +PPG+T   +    AQ   ++ L++  I  Q       +K + EL N+   L++ 
Sbjct: 265 YQQQNSPPGFTQQPQPALAAQDPDIKQLIQQIIQGQATRAMAFDKKIAELHNKIAELHNK 324

Query: 359 L 359
           +
Sbjct: 325 I 325


>At3g31340 Athila ORF 1, putative
          Length = 781

 Score =  148 bits (374), Expect = 5e-36
 Identities = 109/369 (29%), Positives = 175/369 (46%), Gaps = 32/369 (8%)

Query: 2   AERTLKEYATPSTEEPQAIIVYPTVAGNNFEIKPALLNLVQQNQFSGSPTEDPNLHISSF 61
           A +TL+++  P+ +  +    +  +  N+FEIK  LL LV+QNQF    +E+   H+ +F
Sbjct: 58  ARQTLRDHDAPNIDFFRDRNQHLPINRNDFEIKTGLLALVKQNQFFVHSSENHVYHLDNF 117

Query: 62  LRLSGTIKEN---QEAVRLHLFPFSLRDRASAWFHSLEVGSITSWDDMRRAFLARFFPPS 118
             +    + N    + ++  LF FSL D A  W  SL+  ++ SW+D + AFL ++F  S
Sbjct: 118 EDICRITRMNGVPDDIIKCRLFIFSLADNAHRWLKSLDPINLRSWEDYKAAFLGQYFTQS 177

Query: 119 KTAKLRDQITRFNQKDGESLYEAWERFKEMLRLCPHHGLEKWLIVHTFYNGLSYTTKMSV 178
           +TA LR++I+ F Q   ES  EAWERFK+  R CPHHG  +  ++ TFY G+    KM++
Sbjct: 178 RTAILRNKISSFQQGGTESFPEAWERFKDYYRECPHHGFSRATLISTFYQGVDKAYKMAL 237

Query: 179 DAAAGGALMNKNYTEAYALIEDMAQNHYQWTNERAVTTPTPFKKEAGIYEVSEYNHLAAK 238
           D A+ G  M K  TEA  LI+++A ++                   G  E+ +   L+ K
Sbjct: 238 DTASNGDFMTKTETEATKLIKNLAASNINH------NVDYDRSNRGGGGELKQLAELSVK 291

Query: 239 VEALTQKIEKLNVKAVPPSSASPPCEVCGITGHIGVDCQLGSAANIEQLNYAQYNQGMRP 298
           VE L ++ +K+       S      E  G       DC     A +  +N  +Y Q  + 
Sbjct: 292 VEQLLRRDQKVINFCEDSSKGMVHQEYSG-------DCSEDLQAEMNFVNGIRYIQLRQA 344

Query: 299 N--QNFYKNPQGSYGQAAPPGYTNNQRVAQKSSLEILLENC---IANQNKNLQELKNQTG 353
           +  QNF           +P  +     +   S+L+ +LE      A+ N  +  + N   
Sbjct: 345 HKVQNF-----------SPTDFRIKGTIRDNSNLQQILEGLKKNAADINVKVDSMYNDLN 393

Query: 354 FLNDSLSPH 362
               +LS H
Sbjct: 394 VKFATLSSH 402


>At2g13260 putative Athila retroelement ORF1 protein
          Length = 622

 Score =  142 bits (358), Expect = 3e-34
 Identities = 92/262 (35%), Positives = 128/262 (48%), Gaps = 38/262 (14%)

Query: 2   AERTLKEYATPSTEEPQAIIVYPTVAGNNFEIKPALLNLVQQNQFSGSPTEDPNLHISSF 61
           A + +  +  P+    +  I  P V  NNFEIK +L+N+VQ ++F G   EDP  H+  F
Sbjct: 28  AHQPIGAFDEPNIRGNRNGIQAPPVENNNFEIKSSLINMVQTSKFHGLSMEDPLDHLEQF 87

Query: 62  LRLSGTIKEN---QEAVRLHLFPFSLRDRASAWFHSLEVGSITSWDDMRRAFLARFFPPS 118
             L  T+K N   ++A +L LFPFSL DRA  W  +L   SITSWD  +RAFL++FF  +
Sbjct: 88  DMLCSTVKINGISEDAFKLRLFPFSLGDRARIWEKNLPQRSITSWDQCKRAFLSKFFSTT 147

Query: 119 KTAKLRDQITRFNQKDGESLYEAWERFKEMLRLCPHHGLEKWLIVHTFYNGLSYTTKMSV 178
           +TA+LR++I+ F Q+  ES  EAWERFK     CPHHG  K  I                
Sbjct: 148 RTARLRNEISSFTQRSNESFCEAWERFKGYKMQCPHHGFSKESI---------------- 191

Query: 179 DAAAGGALMNKNYTEAYALIEDMAQNHYQWTNERAVTTPTPFKKEAGIYEVSEYNHLAAK 238
                  L N   ++  AL+  + +   +   + A        K   IY           
Sbjct: 192 -------LKNLAQSDTNALLRQILEGQGRGAIDLATQMKGMHTKVDNIY----------- 233

Query: 239 VEALTQKIEKLNVKAVPPSSAS 260
              L  KIE+LNV    PSS++
Sbjct: 234 -GELNAKIERLNVHVYSPSSST 254


>At2g06310 putative Athila retroelement ORF1 protein
          Length = 733

 Score =  124 bits (310), Expect = 1e-28
 Identities = 62/130 (47%), Positives = 85/130 (64%), Gaps = 3/130 (2%)

Query: 21  IVYPTVAGNNFEIKPALLNLVQQNQFSGSPTEDPNLHISSFLRLSGTIKEN---QEAVRL 77
           I  P +  NNFEIK  L++++Q N+F G P EDP  H+  F RL    K N   ++   L
Sbjct: 29  IAPPVIQNNNFEIKSGLISMIQGNKFHGLPMEDPLNHLDEFDRLCNLTKINGVIEDGFNL 88

Query: 78  HLFPFSLRDRASAWFHSLEVGSITSWDDMRRAFLARFFPPSKTAKLRDQITRFNQKDGES 137
            LFPFSL  +A  W  +L   SIT+WDD ++AFL++FF  ++TA+LR++I+ F QK GES
Sbjct: 89  RLFPFSLGGKAHIWEKNLPHDSITTWDDCKKAFLSKFFSNARTARLRNEISGFLQKAGES 148

Query: 138 LYEAWERFKE 147
             EAWERFK+
Sbjct: 149 FCEAWERFKD 158


>At1g36130 hypothetical protein
          Length = 914

 Score =  110 bits (276), Expect = 1e-24
 Identities = 68/203 (33%), Positives = 105/203 (51%), Gaps = 20/203 (9%)

Query: 4   RTLKEYATPST-EEPQAIIVYPTVAGNNFEIKPALLNLVQQNQFSGSPTEDPNLHISSFL 62
           RTL ++  P      ++ IV P +  N++E+KP    LV Q+ F G   E P  HI  F 
Sbjct: 73  RTLGDFNRPDLFYANRSAIVPPPLQRNDYELKPGYFALVGQHPFHGLSHEQPMDHIERFE 132

Query: 63  RLSGTIKEN---QEAVRLHLFPFSLRDRASAWFHSLEVGSITSWDDMRRAFLARFFPPSK 119
            L  +IK N   ++ +   LFP+SL   A +W   L+ GS+ +W  ++ AFL  F+  +K
Sbjct: 133 DLVLSIKANGVSEDYLLCKLFPYSLAGEADSWLKQLKAGSLKTWRSIKIAFLNNFYDDAK 192

Query: 120 TAKLRDQITRFNQKDGESLYEAWERFKEMLRLCPHHGLEKWLIVHTFYNGLSYTTKMSVD 179
           + +LR++++ F Q   E+   AW RFKE  R CPHHG                 ++M++D
Sbjct: 193 SEELRNKLSTFTQGPAEAFKAAWVRFKEYQRDCPHHGF----------------SEMALD 236

Query: 180 AAAGGALMNKNYTEAYALIEDMA 202
           AA+ G        +A  LIE++A
Sbjct: 237 AASNGNFNTHYPADATTLIENLA 259


>At4g07360
          Length = 675

 Score = 99.8 bits (247), Expect = 2e-21
 Identities = 50/99 (50%), Positives = 69/99 (69%), Gaps = 3/99 (3%)

Query: 52  EDPNLHISSFLRLSGTIKEN---QEAVRLHLFPFSLRDRASAWFHSLEVGSITSWDDMRR 108
           EDP  H+  F RL    K N   ++  +L LFPFSL D+A  W  +L   SIT+WDD ++
Sbjct: 2   EDPLDHLDEFDRLCNLTKINGVSEDGFKLRLFPFSLGDKAHIWEKNLLHDSITTWDDCKK 61

Query: 109 AFLARFFPPSKTAKLRDQITRFNQKDGESLYEAWERFKE 147
           AFL++FF  ++TA+LR++I+ F+QK GESL EAWERFK+
Sbjct: 62  AFLSKFFSNARTARLRNEISGFSQKTGESLCEAWERFKD 100



 Score = 36.2 bits (82), Expect = 0.033
 Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 7/74 (9%)

Query: 289 YAQYNQGMRPNQNFYKNPQGSYGQAAPPGYTNNQR---VAQKSSLEILLENCIANQNKNL 345
           +  YNQG  P Q F    QG+Y Q  PPG+   Q     A  + ++ +++  +  Q+ + 
Sbjct: 173 FVPYNQGFVPKQQF----QGNYQQQPPPGFAPQQNQGPAAPDAEMKQMVQQLLQGQSSSS 228

Query: 346 QELKNQTGFLNDSL 359
            E+  +   L+  L
Sbjct: 229 MEIAKKLSELHHKL 242


>At2g06110 putative Athila retroelement ORF1 protein
          Length = 616

 Score = 94.0 bits (232), Expect = 1e-19
 Identities = 50/134 (37%), Positives = 76/134 (56%), Gaps = 3/134 (2%)

Query: 29  NNFEIKPALLNLVQQNQFSGSPTEDPNLHISSFLRLSGTIKEN---QEAVRLHLFPFSLR 85
           N++E+KP    LV Q+ F G   E P  HI  F  L  +IK N   Q+ +   LFP+SL 
Sbjct: 120 NDYELKPGYFALVGQHPFHGLSYEQPMDHIERFEDLVLSIKANGVSQDYLLCKLFPYSLV 179

Query: 86  DRASAWFHSLEVGSITSWDDMRRAFLARFFPPSKTAKLRDQITRFNQKDGESLYEAWERF 145
             A++    L+ GS+ +W  ++ AFL   +   K+ +LR++++ F Q   E+L  AW RF
Sbjct: 180 GEAASLLKQLKAGSLKTWRSIKIAFLNNLYDDVKSEELRNKLSTFTQGPAEALKAAWVRF 239

Query: 146 KEMLRLCPHHGLEK 159
           KE  ++CPHHG  +
Sbjct: 240 KEYQQVCPHHGFSE 253


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.315    0.131    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,605,453
Number of Sequences: 26719
Number of extensions: 409549
Number of successful extensions: 1317
Number of sequences better than 10.0: 68
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1189
Number of HSP's gapped (non-prelim): 106
length of query: 403
length of database: 11,318,596
effective HSP length: 102
effective length of query: 301
effective length of database: 8,593,258
effective search space: 2586570658
effective search space used: 2586570658
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)