BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC121241.13 - phase: 0 /pseudo
(869 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g10580 putative reverse-transcriptase -like protein 475 e-134
At2g14650 putative retroelement pol polyprotein 472 e-133
At2g10780 pseudogene 471 e-133
At2g04670 putative retroelement pol polyprotein 467 e-131
At2g07660 putative retroelement pol polyprotein 405 e-113
At4g03650 putative reverse transcriptase 397 e-110
At3g11970 hypothetical protein 350 1e-96
At1g36590 hypothetical protein 350 1e-96
At2g06890 putative retroelement integrase 343 2e-94
At4g16910 retrotransposon like protein 325 7e-89
At3g31970 hypothetical protein 323 3e-88
At1g35370 hypothetical protein 318 1e-86
At2g05610 putative retroelement pol polyprotein 286 3e-77
At4g07830 putative reverse transcriptase 270 3e-72
At1g36120 putative reverse transcriptase gb|AAD22339.1 268 1e-71
At3g29490 hypothetical protein 267 2e-71
At4g03840 putative transposon protein 246 5e-65
At1g37060 Athila retroelment ORF 1, putative 224 2e-58
At2g06470 putative retroelement pol polyprotein 221 2e-57
At3g29480 hypothetical protein 219 7e-57
>At4g10580 putative reverse-transcriptase -like protein
Length = 1240
Score = 475 bits (1223), Expect = e-134
Identities = 217/347 (62%), Positives = 276/347 (79%)
Query: 2 IDYRQLNKVTIKNRYPLPRIDDLMDQLVGARVFSKIDLSSGYHQIKVKDEDMQKTAFRTR 61
IDYR+LN+VT+KNRYPLPRID+L+DQL GA FSKIDL+SGYHQI + + D++KTAFRTR
Sbjct: 545 IDYRELNRVTVKNRYPLPRIDELLDQLRGATCFSKIDLTSGYHQIPIAEADVRKTAFRTR 604
Query: 62 YGHYEYKVMPFGVTNAPGVFMEYMNRIFHAYLDKFVVVFSDDILIYSKNEEEHAEHMKIV 121
YGH+E+ VMPFG+TNAP VFM MN +F +LD+FV++F DDIL+YSK+ EE H++ V
Sbjct: 605 YGHFEFVVMPFGLTNAPAVFMRLMNSVFQEFLDEFVIIFIDDILVYSKSPEEQEVHLRRV 664
Query: 122 LQLLKEKKLYAKLSKCEFWLSEVSFLGHIISGSGIVVDPSKVDAVSQWETPKSVTEIRSF 181
++ L+E+KL+AKLSKC FW E+ FLGHI+S G+ VDP K++A+ W P + TEIRSF
Sbjct: 665 MEKLREQKLFAKLSKCSFWQREMGFLGHIVSAEGVSVDPEKIEAIRDWPRPTNATEIRSF 724
Query: 182 LGLAGYYRRFIEGFSKLALPLTQLTCKGKSFVWDAQCENSFNELKRRLTTAPILILPKPD 241
LG AGYYRRF++GF+ +A P+T+LT K FVW +CE F LK LT+ P+L LP+
Sbjct: 725 LGWAGYYRRFVKGFASMAQPMTKLTGKDVPFVWSQECEEGFVSLKEMLTSTPVLALPEHG 784
Query: 242 EPFVVYCDASKLGLGGVLMQDGKVVAYASRQLRIHEKNYPTHDLELAAVVFVLKIWRHYL 301
+P++VY DAS++GLG VLMQ GKV+AYASRQL HE NYPTHDLE+AAV+F LKIWR YL
Sbjct: 785 QPYMVYTDASRVGLGCVLMQHGKVIAYASRQLMKHEGNYPTHDLEMAAVIFALKIWRSYL 844
Query: 302 YGS*FEVFSDHKSLKYLFDQKELNMRQRRWLELLKDCDFGLNYHPGK 348
YG +VF+DHKSLKY+F Q ELN+RQRRW+EL+ D D + YHPGK
Sbjct: 845 YGGKVQVFTDHKSLKYIFTQPELNLRQRRWMELVADYDLEIAYHPGK 891
Score = 133 bits (335), Expect = 4e-31
Identities = 70/172 (40%), Positives = 108/172 (62%), Gaps = 4/172 (2%)
Query: 699 IEKVQMIREKMKASQSRQKSYHDKRKKALEFQEGDHVFLRVTPMTGVGRALKSKKLTPKF 758
I K+ + MK +Q RQ+SY DKR++ LEF+ GD V+L++ + G R++ KL+P++
Sbjct: 1065 IVKLHGVPLNMKEAQDRQRSYADKRRRELEFEVGDRVYLKMAMLRGPNRSISETKLSPRY 1124
Query: 759 IGPYQISERVGTVAYRVGLPPHLSNLHDVFHVSQLRKYVADPSHVIPRADVQVRDNLTIE 818
+GP++I ERV VAYR+ LP + H VFHVS LRK + + + ++ N+T+E
Sbjct: 1125 MGPFKIVERVEPVAYRLELPDVMRAFHKVFHVSMLRKCLHKDDEALAKIPEDLQPNMTLE 1184
Query: 819 TLPLRIEYREVKKLRGKDIPLVKVV--LGGVTGESLTWELESKMLESYPELF 868
P+R+ R +K+LR K IPL+KV+ GVT E TWE E++M + + F
Sbjct: 1185 ARPVRVLERRIKELRQKKIPLIKVLWDCDGVTEE--TWEPEARMKARFKKWF 1234
Score = 29.3 bits (64), Expect = 10.0
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 563 AQLAEIYIHNIVKLHGVPSSI--VSDRNFRFTSRFWKSLQDALGSKLRVSSA 612
A LA+ ++ IVKLHGVP ++ DR + + + L+ +G ++ + A
Sbjct: 1055 AVLAKKFVSEIVKLHGVPLNMKEAQDRQRSYADKRRRELEFEVGDRVYLKMA 1106
>At2g14650 putative retroelement pol polyprotein
Length = 1328
Score = 472 bits (1215), Expect = e-133
Identities = 218/347 (62%), Positives = 274/347 (78%)
Query: 2 IDYRQLNKVTIKNRYPLPRIDDLMDQLVGARVFSKIDLSSGYHQIKVKDEDMQKTAFRTR 61
IDYR LN VT+KN+YPLPRID+L+DQL GA FSKIDL+SGYH I + + D++KTAFRTR
Sbjct: 520 IDYRGLNWVTVKNKYPLPRIDELLDQLRGATCFSKIDLTSGYHLIPIAEADVRKTAFRTR 579
Query: 62 YGHYEYKVMPFGVTNAPGVFMEYMNRIFHAYLDKFVVVFSDDILIYSKNEEEHAEHMKIV 121
YGH+E+ VMPFG+TNAP FM MN +F LD+FV++F DDIL+YSK+ EEH H++ V
Sbjct: 580 YGHFEFVVMPFGLTNAPAAFMRLMNSVFQEVLDEFVIIFIDDILVYSKSLEEHEVHLRRV 639
Query: 122 LQLLKEKKLYAKLSKCEFWLSEVSFLGHIISGSGIVVDPSKVDAVSQWETPKSVTEIRSF 181
++ L+E+KL+AKLSKC FW E+ FLGHI+S G+ VDP K++A+ W TP + TEIRSF
Sbjct: 640 MEKLREQKLFAKLSKCSFWQREMGFLGHIVSAEGVSVDPEKIEAIRDWHTPTNATEIRSF 699
Query: 182 LGLAGYYRRFIEGFSKLALPLTQLTCKGKSFVWDAQCENSFNELKRRLTTAPILILPKPD 241
LGLAGYYRRF++GF+ +A P+T+LT K FVW +CE F LK LT+ P+L LP+
Sbjct: 700 LGLAGYYRRFVKGFASMAQPMTKLTGKDVPFVWSPECEEGFVSLKEMLTSTPVLALPEHG 759
Query: 242 EPFVVYCDASKLGLGGVLMQDGKVVAYASRQLRIHEKNYPTHDLELAAVVFVLKIWRHYL 301
EP++VY DAS +GLG VLMQ GKV+AYASRQLR HE NYPTHDLE+AAV+F LKIWR YL
Sbjct: 760 EPYMVYTDASGVGLGCVLMQRGKVIAYASRQLRKHEGNYPTHDLEMAAVIFALKIWRSYL 819
Query: 302 YGS*FEVFSDHKSLKYLFDQKELNMRQRRWLELLKDCDFGLNYHPGK 348
YG +VF+DHKSLKY+F Q ELN+RQR+W+EL+ D D + YHPGK
Sbjct: 820 YGGNVQVFTDHKSLKYIFTQPELNLRQRQWMELVADYDLEIAYHPGK 866
Score = 313 bits (801), Expect = 3e-85
Identities = 154/308 (50%), Positives = 217/308 (70%), Gaps = 4/308 (1%)
Query: 563 AQLAEIYIHNIVKLHGVPSSIVSDRNFRFTSRFWKSLQDALGSKLRVSSAYHPQADGHSE 622
A LA+ Y+ IVKLHGVP SIVSDR+ +FTS FW++ Q +G+K+++S+AYHPQ G SE
Sbjct: 1020 AVLAKKYVSEIVKLHGVPVSIVSDRDSKFTSAFWRAFQAEMGTKVQMSTAYHPQTYGQSE 1079
Query: 623 RTIQSLEDLLRVCVLEQGGAWDSHLPLIEFTYNNSYHSSIGMAPFETLYGRRCRTPLCWF 682
RTIQ+LED+LR+CVL+ GG W HL L+EF YNNSY +SIGMAPFE LY R CRTPLC
Sbjct: 1080 RTIQTLEDMLRMCVLDWGGHWADHLSLVEFAYNNSYPASIGMAPFEALYERPCRTPLCLT 1139
Query: 683 ESGESVLLGPDLVHQTIEKVQMIREKMKASQSRQKSYHDKRKKALEFQEGDHVFLRVTPM 742
+ GE + G D V +T E++++++ MK +Q RQ+SY DKR++ LEF+ GD V+L++ +
Sbjct: 1140 QVGERSIYGADYVQETTERIRVLKLNMKEAQDRQRSYADKRRRELEFEVGDRVYLKMAML 1199
Query: 743 TGVGRALKSKKLTPKFIGPYQISERVGTVAYRVGLPPHLSNLHDVFHVSQLRKYVADPSH 802
G R++ KL+P+++GP++I ERVG VAYR+ LP + H VFHVS LRK +
Sbjct: 1200 RGPNRSISETKLSPRYMGPFRIVERVGPVAYRLELPDVMRAFHKVFHVSMLRKCLHKDDE 1259
Query: 803 VIPRADVQVRDNLTIETLPLRIEYREVKKLRGKDIPLVKVV--LGGVTGESLTWELESKM 860
V+ + ++ N+T+E P+R+ R +K+LR K IPL+KV+ GVT E TWE E++M
Sbjct: 1260 VLAKIPEDLQPNMTLEARPVRVLERRIKELRRKKIPLIKVLWDCDGVTKE--TWEPEARM 1317
Query: 861 LESYPELF 868
+ + F
Sbjct: 1318 KARFKKWF 1325
>At2g10780 pseudogene
Length = 1611
Score = 471 bits (1213), Expect = e-133
Identities = 218/347 (62%), Positives = 277/347 (79%)
Query: 2 IDYRQLNKVTIKNRYPLPRIDDLMDQLVGARVFSKIDLSSGYHQIKVKDEDMQKTAFRTR 61
IDYR LNKVT+KN+YPLPRID+LMDQL GA+ FSKIDL+SGYHQI ++ D++KTAFRTR
Sbjct: 713 IDYRGLNKVTVKNKYPLPRIDELMDQLGGAQWFSKIDLASGYHQIPIEPTDVRKTAFRTR 772
Query: 62 YGHYEYKVMPFGVTNAPGVFMEYMNRIFHAYLDKFVVVFSDDILIYSKNEEEHAEHMKIV 121
Y H+E+ VMPFG+TNAP FM+ MN +F +LD+FV++F +DIL+YSK+ E H EH++ V
Sbjct: 773 YDHFEFVVMPFGLTNAPAAFMKMMNGVFRDFLDEFVIIFINDILVYSKSWEAHQEHLRAV 832
Query: 122 LQLLKEKKLYAKLSKCEFWLSEVSFLGHIISGSGIVVDPSKVDAVSQWETPKSVTEIRSF 181
L+ L+E +L+AKLSKC FW V FLGH+IS G+ VDP K+ ++ +W P++ TEIRSF
Sbjct: 833 LERLREHELFAKLSKCSFWQRSVGFLGHVISDQGVSVDPEKIRSIKEWPRPRNATEIRSF 892
Query: 182 LGLAGYYRRFIEGFSKLALPLTQLTCKGKSFVWDAQCENSFNELKRRLTTAPILILPKPD 241
LGLAGYYRRF+ F+ +A PLT+LT K +F W +CE SF ELK LT AP+L+LP+
Sbjct: 893 LGLAGYYRRFVMSFASMAQPLTRLTGKDTAFNWSDECEKSFLELKAMLTNAPVLVLPEEG 952
Query: 242 EPFVVYCDASKLGLGGVLMQDGKVVAYASRQLRIHEKNYPTHDLELAAVVFVLKIWRHYL 301
EP+ VY DAS +GLG VLMQ G V+AYASRQLR HEKNYPTHDLE+AAVVF LKIWR YL
Sbjct: 953 EPYTVYTDASIVGLGCVLMQKGSVIAYASRQLRKHEKNYPTHDLEMAAVVFFLKIWRSYL 1012
Query: 302 YGS*FEVFSDHKSLKYLFDQKELNMRQRRWLELLKDCDFGLNYHPGK 348
YG+ ++++DHKSLKY+F Q ELN+RQRRW+EL+ D + + YHPGK
Sbjct: 1013 YGAKVQIYTDHKSLKYIFTQPELNLRQRRWMELVADYNLDIAYHPGK 1059
Score = 333 bits (855), Expect = 2e-91
Identities = 159/304 (52%), Positives = 217/304 (71%)
Query: 565 LAEIYIHNIVKLHGVPSSIVSDRNFRFTSRFWKSLQDALGSKLRVSSAYHPQADGHSERT 624
+AE YI IV+LHG+P SIVSDR+ RFTS+FWK+ Q ALG+++ +S+AYHPQ D SERT
Sbjct: 1279 IAEKYIDEIVRLHGIPVSIVSDRDTRFTSKFWKAFQKALGTRVNLSTAYHPQTDEQSERT 1338
Query: 625 IQSLEDLLRVCVLEQGGAWDSHLPLIEFTYNNSYHSSIGMAPFETLYGRRCRTPLCWFES 684
IQ+LED+LR CVL+ GG W+ +L L+EF YNNS+ +SIGM+P+E LYGR CRTPLCW
Sbjct: 1339 IQTLEDMLRACVLDWGGNWEKYLRLVEFAYNNSFQASIGMSPYEALYGRACRTPLCWTPV 1398
Query: 685 GESVLLGPDLVHQTIEKVQMIREKMKASQSRQKSYHDKRKKALEFQEGDHVFLRVTPMTG 744
GE L GP +V +T E+++ ++ K+K +Q RQKSY +KR+K LEFQ GD V+L+ G
Sbjct: 1399 GERRLFGPTIVDETTERMKFLKIKLKEAQDRQKSYANKRRKELEFQVGDLVYLKAMTYKG 1458
Query: 745 VGRALKSKKLTPKFIGPYQISERVGTVAYRVGLPPHLSNLHDVFHVSQLRKYVADPSHVI 804
GR KKL+P+++GPY++ ERVG VAY++ LPP L+ H+VFHVSQLRK ++D +
Sbjct: 1459 AGRFTSRKKLSPRYVGPYKVIERVGAVAYKLDLPPKLNAFHNVFHVSQLRKCLSDQEESV 1518
Query: 805 PRADVQVRDNLTIETLPLRIEYREVKKLRGKDIPLVKVVLGGVTGESLTWELESKMLESY 864
+++N+T+E P+RI R K RGK L+KV+ E TWE E+KM ++
Sbjct: 1519 EDIPPGLKENMTVEAWPVRIMDRMTKGTRGKARDLLKVLWNCRGREEYTWETENKMKANF 1578
Query: 865 PELF 868
PE F
Sbjct: 1579 PEWF 1582
>At2g04670 putative retroelement pol polyprotein
Length = 1411
Score = 467 bits (1202), Expect = e-131
Identities = 213/347 (61%), Positives = 272/347 (78%)
Query: 2 IDYRQLNKVTIKNRYPLPRIDDLMDQLVGARVFSKIDLSSGYHQIKVKDEDMQKTAFRTR 61
IDYR LN VT+KN+YPLPRID+L+DQL GA FSKIDL+SGYHQI + + D++KTAFRTR
Sbjct: 571 IDYRGLNWVTVKNKYPLPRIDELLDQLRGATCFSKIDLTSGYHQIPIAEADVRKTAFRTR 630
Query: 62 YGHYEYKVMPFGVTNAPGVFMEYMNRIFHAYLDKFVVVFSDDILIYSKNEEEHAEHMKIV 121
YGH+E+ VMPF +TNAP FM MN +F +LD+FV++F DDIL+YSK+ EEH H++ V
Sbjct: 631 YGHFEFVVMPFALTNAPAAFMRLMNSVFQEFLDEFVIIFIDDILVYSKSPEEHEVHLRRV 690
Query: 122 LQLLKEKKLYAKLSKCEFWLSEVSFLGHIISGSGIVVDPSKVDAVSQWETPKSVTEIRSF 181
++ L+E+KL+AKLSKC FW E+ FLGHI+S G+ VDP K++A+ W P + TEIRSF
Sbjct: 691 MEKLREQKLFAKLSKCSFWQREIGFLGHIVSAEGVSVDPEKIEAIRDWPRPTNATEIRSF 750
Query: 182 LGLAGYYRRFIEGFSKLALPLTQLTCKGKSFVWDAQCENSFNELKRRLTTAPILILPKPD 241
L L GYYRRF++GF+ +A P+T+LT K FVW +CE F LK LT+ P+L LP+
Sbjct: 751 LRLTGYYRRFVKGFASMAQPMTKLTGKDVPFVWSPECEEGFVSLKEMLTSTPVLALPEHG 810
Query: 242 EPFVVYCDASKLGLGGVLMQDGKVVAYASRQLRIHEKNYPTHDLELAAVVFVLKIWRHYL 301
+P++VY DAS++GLG VLMQ GKV+AYASRQLR HE NYPTHDLE+A V+F LKIWR YL
Sbjct: 811 QPYMVYTDASRVGLGCVLMQRGKVIAYASRQLRKHEGNYPTHDLEMAVVIFALKIWRSYL 870
Query: 302 YGS*FEVFSDHKSLKYLFDQKELNMRQRRWLELLKDCDFGLNYHPGK 348
YG +VF+DHKSLKY+F+Q ELN+RQ RW+EL+ D D + YHPGK
Sbjct: 871 YGGKVQVFTDHKSLKYIFNQPELNLRQMRWMELVADYDLEIAYHPGK 917
Score = 309 bits (791), Expect = 5e-84
Identities = 152/308 (49%), Positives = 216/308 (69%), Gaps = 4/308 (1%)
Query: 563 AQLAEIYIHNIVKLHGVPSSIVSDRNFRFTSRFWKSLQDALGSKLRVSSAYHPQADGHSE 622
A LA+ Y+ IVKLHGVP SIVSDR+ +FT FW++ Q +G+K+++S+AYHPQ DG SE
Sbjct: 1100 AVLAKKYVSEIVKLHGVPVSIVSDRDSKFTFAFWRAFQAKMGTKVQMSTAYHPQTDGQSE 1159
Query: 623 RTIQSLEDLLRVCVLEQGGAWDSHLPLIEFTYNNSYHSSIGMAPFETLYGRRCRTPLCWF 682
RTIQ+LED+LR+CVL+ GG W HL L+EF YNNSY +SIGMAPFE LYGR C TPL W
Sbjct: 1160 RTIQTLEDMLRMCVLDWGGHWADHLSLVEFAYNNSYQASIGMAPFEALYGRPCWTPLRWT 1219
Query: 683 ESGESVLLGPDLVHQTIEKVQMIREKMKASQSRQKSYHDKRKKALEFQEGDHVFLRVTPM 742
+ E + G D V +T E++++++ MK +Q+RQ+SY DKR++ LEF+ GD V+L++ +
Sbjct: 1220 QVEERSIYGADYVQETTERIRVLKLNMKEAQARQRSYADKRRRELEFEVGDRVYLKMAML 1279
Query: 743 TGVGRALKSKKLTPKFIGPYQISERVGTVAYRVGLPPHLSNLHDVFHVSQLRKYVADPSH 802
G R++ KL+P+++GP++I ERVG VAYR+ LP + H VFHV LRK +
Sbjct: 1280 RGPNRSILETKLSPRYMGPFRIVERVGPVAYRLELPDVMRAFHKVFHVLMLRKCLHKDDE 1339
Query: 803 VIPRADVQVRDNLTIETLPLRIEYREVKKLRGKDIPLVKVV--LGGVTGESLTWELESKM 860
V+ + ++ N+T+E P+R+ R +K+LR K IPL+KV+ GVT E TWE E++M
Sbjct: 1340 VLVKIPEDLQPNMTLEARPVRVLERRIKELRRKKIPLIKVLWDCDGVTEE--TWEPEARM 1397
Query: 861 LESYPELF 868
+ + F
Sbjct: 1398 KARFKKWF 1405
>At2g07660 putative retroelement pol polyprotein
Length = 949
Score = 405 bits (1040), Expect = e-113
Identities = 190/300 (63%), Positives = 238/300 (79%)
Query: 2 IDYRQLNKVTIKNRYPLPRIDDLMDQLVGARVFSKIDLSSGYHQIKVKDEDMQKTAFRTR 61
IDYR LNKVT+KN+YPLPRID+LMDQL GA+ FSKIDL+SGYHQI ++ D++KTAFRTR
Sbjct: 208 IDYRGLNKVTVKNKYPLPRIDELMDQLGGAQWFSKIDLASGYHQIPIEPTDVRKTAFRTR 267
Query: 62 YGHYEYKVMPFGVTNAPGVFMEYMNRIFHAYLDKFVVVFSDDILIYSKNEEEHAEHMKIV 121
YGH+E+ VMPFG+TNAP FM+ MN +F +LD+FV++F DDIL++SK+ E H EH++ V
Sbjct: 268 YGHFEFVVMPFGLTNAPAAFMKMMNGVFRDFLDEFVIIFIDDILVHSKSWEAHQEHLRAV 327
Query: 122 LQLLKEKKLYAKLSKCEFWLSEVSFLGHIISGSGIVVDPSKVDAVSQWETPKSVTEIRSF 181
L+ L+E +L+AKLSK FW V FLGH+IS G+ VDP K+ ++ +W P++ TEIRSF
Sbjct: 328 LERLREHELFAKLSKFSFWQRSVGFLGHVISDQGVSVDPEKIRSIKEWPRPRNATEIRSF 387
Query: 182 LGLAGYYRRFIEGFSKLALPLTQLTCKGKSFVWDAQCENSFNELKRRLTTAPILILPKPD 241
LGLAGYYRRF+ F+ +A PLT+LT K +F W +CE SF ELK L AP+L+LP+
Sbjct: 388 LGLAGYYRRFVMSFASMAQPLTRLTGKDTAFNWSDECEKSFLELKAMLINAPVLVLPEEG 447
Query: 242 EPFVVYCDASKLGLGGVLMQDGKVVAYASRQLRIHEKNYPTHDLELAAVVFVLKIWRHYL 301
EP+ VY DAS +GLG VLMQ G V+AYASRQLR HEKNYPTHDLE+AAVVF LKIWR YL
Sbjct: 448 EPYTVYTDASIVGLGCVLMQKGSVIAYASRQLRKHEKNYPTHDLEMAAVVFALKIWRSYL 507
Score = 320 bits (819), Expect = 3e-87
Identities = 150/279 (53%), Positives = 205/279 (72%)
Query: 565 LAEIYIHNIVKLHGVPSSIVSDRNFRFTSRFWKSLQDALGSKLRVSSAYHPQADGHSERT 624
+AE YI I++LHG+P SIVSDR+ RFTS+FW + Q ALG+++ +S+AYHPQ DG SERT
Sbjct: 671 IAEKYIDEIMRLHGIPVSIVSDRDTRFTSKFWNAFQKALGTRVNLSTAYHPQTDGQSERT 730
Query: 625 IQSLEDLLRVCVLEQGGAWDSHLPLIEFTYNNSYHSSIGMAPFETLYGRRCRTPLCWFES 684
IQ+LED+LR CVL+ GG W+ +L LIEF YNNS+ +SIGM+P+E LYGR CRTPLCW
Sbjct: 731 IQTLEDMLRACVLDWGGNWEKYLRLIEFAYNNSFQASIGMSPYEALYGRACRTPLCWTPV 790
Query: 685 GESVLLGPDLVHQTIEKVQMIREKMKASQSRQKSYHDKRKKALEFQEGDHVFLRVTPMTG 744
GE L GP +V +T E+++ ++ K+K +Q RQKSY +KR+K LEFQ GD V+L+ G
Sbjct: 791 GERRLFGPTIVDETTERMKFLKIKLKEAQDRQKSYANKRRKELEFQVGDLVYLKAMTYKG 850
Query: 745 VGRALKSKKLTPKFIGPYQISERVGTVAYRVGLPPHLSNLHDVFHVSQLRKYVADPSHVI 804
GR KKL+P+++GPY++ ERVG VAY++ LPP L+ H+VFHVSQLRKY++D +
Sbjct: 851 AGRFTSRKKLSPRYVGPYKVIERVGAVAYKLDLPPKLNVFHNVFHVSQLRKYLSDQEESV 910
Query: 805 PRADVQVRDNLTIETLPLRIEYREVKKLRGKDIPLVKVV 843
+++N+T+E P+RI R K RGK L+KV+
Sbjct: 911 EDIPPGLKENMTVEAWPVRIMDRMSKGTRGKSRDLLKVL 949
>At4g03650 putative reverse transcriptase
Length = 839
Score = 397 bits (1019), Expect = e-110
Identities = 181/296 (61%), Positives = 230/296 (77%)
Query: 50 DEDMQKTAFRTRYGHYEYKVMPFGVTNAPGVFMEYMNRIFHAYLDKFVVVFSDDILIYSK 109
+ D++KTAFRTRYGH+E+ VMPFG+TNAP FM MN +F +LD+FV++F DDIL+YSK
Sbjct: 518 EADVRKTAFRTRYGHFEFVVMPFGLTNAPAAFMRLMNSVFQEFLDEFVIIFIDDILVYSK 577
Query: 110 NEEEHAEHMKIVLQLLKEKKLYAKLSKCEFWLSEVSFLGHIISGSGIVVDPSKVDAVSQW 169
+ EEH H++ V++ L+E+KL+AKLSKC FW E+ FLGHI+S G+ VDP K++A+ W
Sbjct: 578 SPEEHEVHLRRVMEKLREQKLFAKLSKCSFWQREMGFLGHIVSAEGVSVDPEKIEAIRDW 637
Query: 170 ETPKSVTEIRSFLGLAGYYRRFIEGFSKLALPLTQLTCKGKSFVWDAQCENSFNELKRRL 229
P + TEIRSFLGLAGYYRRFI+GF+ +A P+T+LT K FVW +CE F LK L
Sbjct: 638 PRPTNATEIRSFLGLAGYYRRFIKGFASMAQPMTKLTGKDVPFVWSPECEEGFVSLKEML 697
Query: 230 TTAPILILPKPDEPFVVYCDASKLGLGGVLMQDGKVVAYASRQLRIHEKNYPTHDLELAA 289
T+ P+L LP+ EP++VY DAS +GLG LMQ GKV+AYASRQLR HE NYPTHDLE+AA
Sbjct: 698 TSTPVLALPEHGEPYMVYTDASGVGLGCALMQRGKVIAYASRQLRKHEGNYPTHDLEMAA 757
Query: 290 VVFVLKIWRHYLYGS*FEVFSDHKSLKYLFDQKELNMRQRRWLELLKDCDFGLNYH 345
V+F LKIWR YLYG +VF+DHKSLKY+F Q ELN+RQRRW+EL+ D D + YH
Sbjct: 758 VIFALKIWRSYLYGGKVQVFTDHKSLKYIFTQPELNLRQRRWMELVADYDLEIAYH 813
Score = 37.0 bits (84), Expect = 0.048
Identities = 14/23 (60%), Positives = 20/23 (86%)
Query: 603 LGSKLRVSSAYHPQADGHSERTI 625
+G+K+++S+ YHPQ DG SERTI
Sbjct: 817 MGTKVQMSTTYHPQTDGQSERTI 839
>At3g11970 hypothetical protein
Length = 1499
Score = 350 bits (899), Expect = 1e-96
Identities = 171/347 (49%), Positives = 240/347 (68%), Gaps = 1/347 (0%)
Query: 2 IDYRQLNKVTIKNRYPLPRIDDLMDQLVGARVFSKIDLSSGYHQIKVKDEDMQKTAFRTR 61
+DYR+LN +T+K+ +P+P I+DLMD+L GA +FSKIDL +GYHQ+++ +D+QKTAF+T
Sbjct: 655 VDYRELNGMTVKDSFPIPLIEDLMDELGGAVIFSKIDLRAGYHQVRMDPDDIQKTAFKTH 714
Query: 62 YGHYEYKVMPFGVTNAPGVFMEYMNRIFHAYLDKFVVVFSDDILIYSKNEEEHAEHMKIV 121
GH+EY VMPFG+TNAP F MN IF +L KFV+VF DDIL+YS + EEH +H+K V
Sbjct: 715 SGHFEYLVMPFGLTNAPATFQGLMNFIFKPFLRKFVLVFFDDILVYSSSLEEHRQHLKQV 774
Query: 122 LQLLKEKKLYAKLSKCEFWLSEVSFLGHIISGSGIVVDPSKVDAVSQWETPKSVTEIRSF 181
++++ KL+AKLSKC F + +V +LGH IS GI DP+K+ AV +W P ++ ++R F
Sbjct: 775 FEVMRANKLFAKLSKCAFAVPKVEYLGHFISAQGIETDPAKIKAVKEWPQPTTLKQLRGF 834
Query: 182 LGLAGYYRRFIEGFSKLALPLTQLTCKGKSFVWDAQCENSFNELKRRLTTAPILILPKPD 241
LGLAGYYRRF+ F +A PL LT K +F W A + +F +LK L AP+L LP D
Sbjct: 835 LGLAGYYRRFVRSFGVIAGPLHALT-KTDAFEWTAVAQQAFEDLKAALCQAPVLSLPLFD 893
Query: 242 EPFVVYCDASKLGLGGVLMQDGKVVAYASRQLRIHEKNYPTHDLELAAVVFVLKIWRHYL 301
+ FVV DA G+G VLMQ+G +AY SRQL+ + + ++ EL AV+F ++ WRHYL
Sbjct: 894 KQFVVETDACGQGIGAVLMQEGHPLAYISRQLKGKQLHLSIYEKELLAVIFAVRKWRHYL 953
Query: 302 YGS*FEVFSDHKSLKYLFDQKELNMRQRRWLELLKDCDFGLNYHPGK 348
S F + +D +SLKYL +Q+ Q++WL L + D+ + Y GK
Sbjct: 954 LQSHFIIKTDQRSLKYLLEQRLNTPIQQQWLPKLLEFDYEIQYRQGK 1000
Score = 181 bits (459), Expect = 2e-45
Identities = 104/306 (33%), Positives = 169/306 (54%), Gaps = 5/306 (1%)
Query: 565 LAEIYIHNIVKLHGVPSSIVSDRNFRFTSRFWKSLQDALGSKLRVSSAYHPQADGHSERT 624
+A Y+ N+ KLHG P+SIVSDR+ FTS FW+ G L+++SAYHPQ+DG +E
Sbjct: 1198 VAHAYLDNVFKLHGCPTSIVSDRDVVFTSEFWREFFTLQGVALKLTSAYHPQSDGQTEVV 1257
Query: 625 IQSLEDLLRVCVLEQGGAWDSHLPLIEFTYNNSYHSSIGMAPFETLYGRRCRTPLCWFES 684
+ LE LR ++ W L L E+ YN +YHSS M PFE +YG+ L +
Sbjct: 1258 NRCLETYLRCMCHDRPQLWSKWLALAEYWYNTNYHSSSRMTPFEIVYGQVPPVHLPYLPG 1317
Query: 685 GESVLLGPDLVHQTIEKVQMIREKMKASQSRQKSYHDKRKKALEFQEGDHVFLRVTPMTG 744
V + + + + + ++ + +Q R K + D+ + EF+ GD+V++++ P
Sbjct: 1318 ESKVAVVARSLQEREDMLLFLKFHLMRAQHRMKQFADQHRTEREFEIGDYVYVKLQPYRQ 1377
Query: 745 VGRALK-SKKLTPKFIGPYQISERVGTVAYRVGLPPHLSNLHDVFHVSQLRKYVADPSHV 803
++ ++KL+PK+ GPY+I +R G VAY++ LP + S +H VFHVSQL+ V + S
Sbjct: 1378 QSVVMRANQKLSPKYFGPYKIIDRCGEVAYKLALPSY-SQVHPVFHVSQLKVLVGNVSTT 1436
Query: 804 IPRADVQVRDNLTIETLPLRIEYREVKKLRGKDIPLVKVVLGGVTGESLTWELESKMLES 863
+ V ++D E +P ++ R++ +GK + V V E TWE + ++
Sbjct: 1437 VHLPSV-MQD--VFEKVPEKVVERKMVNRQGKAVTKVLVKWSNEPLEEATWEFLFDLQKT 1493
Query: 864 YPELFA 869
+PE A
Sbjct: 1494 FPEFEA 1499
>At1g36590 hypothetical protein
Length = 1499
Score = 350 bits (899), Expect = 1e-96
Identities = 171/347 (49%), Positives = 240/347 (68%), Gaps = 1/347 (0%)
Query: 2 IDYRQLNKVTIKNRYPLPRIDDLMDQLVGARVFSKIDLSSGYHQIKVKDEDMQKTAFRTR 61
+DYR+LN +T+K+ +P+P I+DLMD+L GA +FSKIDL +GYHQ+++ +D+QKTAF+T
Sbjct: 655 VDYRELNGMTVKDSFPIPLIEDLMDELGGAVIFSKIDLRAGYHQVRMDPDDIQKTAFKTH 714
Query: 62 YGHYEYKVMPFGVTNAPGVFMEYMNRIFHAYLDKFVVVFSDDILIYSKNEEEHAEHMKIV 121
GH+EY VMPFG+TNAP F MN IF +L KFV+VF DDIL+YS + EEH +H+K V
Sbjct: 715 SGHFEYLVMPFGLTNAPATFQGLMNFIFKPFLRKFVLVFFDDILVYSSSLEEHRQHLKQV 774
Query: 122 LQLLKEKKLYAKLSKCEFWLSEVSFLGHIISGSGIVVDPSKVDAVSQWETPKSVTEIRSF 181
++++ KL+AKLSKC F + +V +LGH IS GI DP+K+ AV +W P ++ ++R F
Sbjct: 775 FEVMRANKLFAKLSKCAFAVPKVEYLGHFISAQGIETDPAKIKAVKEWPQPTTLKQLRGF 834
Query: 182 LGLAGYYRRFIEGFSKLALPLTQLTCKGKSFVWDAQCENSFNELKRRLTTAPILILPKPD 241
LGLAGYYRRF+ F +A PL LT K +F W A + +F +LK L AP+L LP D
Sbjct: 835 LGLAGYYRRFVRSFGVIAGPLHALT-KTDAFEWTAVAQQAFEDLKAALCQAPVLSLPLFD 893
Query: 242 EPFVVYCDASKLGLGGVLMQDGKVVAYASRQLRIHEKNYPTHDLELAAVVFVLKIWRHYL 301
+ FVV DA G+G VLMQ+G +AY SRQL+ + + ++ EL AV+F ++ WRHYL
Sbjct: 894 KQFVVETDACGQGIGAVLMQEGHPLAYISRQLKGKQLHLSIYEKELLAVIFAVRKWRHYL 953
Query: 302 YGS*FEVFSDHKSLKYLFDQKELNMRQRRWLELLKDCDFGLNYHPGK 348
S F + +D +SLKYL +Q+ Q++WL L + D+ + Y GK
Sbjct: 954 LQSHFIIKTDQRSLKYLLEQRLNTPIQQQWLPKLLEFDYEIQYRQGK 1000
Score = 182 bits (461), Expect = 9e-46
Identities = 104/306 (33%), Positives = 170/306 (54%), Gaps = 5/306 (1%)
Query: 565 LAEIYIHNIVKLHGVPSSIVSDRNFRFTSRFWKSLQDALGSKLRVSSAYHPQADGHSERT 624
+A+ Y+ N+ KLHG P+SIVSDR+ FTS FW+ G L+++SAYHPQ+DG +E
Sbjct: 1198 VAQAYLDNVFKLHGCPTSIVSDRDVVFTSEFWREFFTLQGVALKLTSAYHPQSDGQTEVV 1257
Query: 625 IQSLEDLLRVCVLEQGGAWDSHLPLIEFTYNNSYHSSIGMAPFETLYGRRCRTPLCWFES 684
+ LE LR ++ W L L E+ YN +YHSS M PFE +YG+ L +
Sbjct: 1258 NRCLETYLRCMCHDRPQLWSKWLALAEYWYNTNYHSSSRMTPFEIVYGQVPPVHLPYLPG 1317
Query: 685 GESVLLGPDLVHQTIEKVQMIREKMKASQSRQKSYHDKRKKALEFQEGDHVFLRVTPMTG 744
V + + + + + ++ + +Q R K + D+ + EF+ GD+V++++ P
Sbjct: 1318 ESKVAVVARSLQEREDMLLFLKFHLMRAQHRMKQFADQHRTEREFEIGDYVYVKLQPYRQ 1377
Query: 745 VGRALK-SKKLTPKFIGPYQISERVGTVAYRVGLPPHLSNLHDVFHVSQLRKYVADPSHV 803
++ ++KL+PK+ GPY+I +R G VAY++ LP + S +H VFHVSQL+ V + S
Sbjct: 1378 QSVVMRANQKLSPKYFGPYKIIDRCGEVAYKLALPSY-SQVHPVFHVSQLKVLVGNVSTT 1436
Query: 804 IPRADVQVRDNLTIETLPLRIEYREVKKLRGKDIPLVKVVLGGVTGESLTWELESKMLES 863
+ V ++D E +P ++ R++ +GK + V V E TWE + ++
Sbjct: 1437 VHLPSV-MQD--VFEKVPEKVVERKMVNRQGKAVTKVLVKWSNEPLEEATWEFLFDLQKT 1493
Query: 864 YPELFA 869
+PE A
Sbjct: 1494 FPEFEA 1499
>At2g06890 putative retroelement integrase
Length = 1215
Score = 343 bits (881), Expect = 2e-94
Identities = 163/346 (47%), Positives = 238/346 (68%)
Query: 3 DYRQLNKVTIKNRYPLPRIDDLMDQLVGARVFSKIDLSSGYHQIKVKDEDMQKTAFRTRY 62
D R +N VT+K +P+PR+DD++D+L G+ +FSKIDL SGYHQI++ + D KTAF+T++
Sbjct: 474 DCRAINNVTVKYCHPIPRLDDMLDELHGSSIFSKIDLKSGYHQIRMNEGDEWKTAFKTKH 533
Query: 63 GHYEYKVMPFGVTNAPGVFMEYMNRIFHAYLDKFVVVFSDDILIYSKNEEEHAEHMKIVL 122
G YE+ VMPFG+T+AP FM MN + A++ FV+V+ DDIL+YS++ EH EH+ VL
Sbjct: 534 GLYEWLVMPFGLTHAPSTFMRLMNHVLRAFIGIFVIVYFDDILVYSESLREHIEHLDSVL 593
Query: 123 QLLKEKKLYAKLSKCEFWLSEVSFLGHIISGSGIVVDPSKVDAVSQWETPKSVTEIRSFL 182
+L++++LYA L KC F + FLG ++S G+ VD KV A+ W +PK+V E+RSF
Sbjct: 594 NVLRKEELYANLKKCTFCTDNLVFLGFVVSADGVKVDEEKVKAIRDWPSPKTVGEVRSFH 653
Query: 183 GLAGYYRRFIEGFSKLALPLTQLTCKGKSFVWDAQCENSFNELKRRLTTAPILILPKPDE 242
GLAG+YRRF + FS + PLT++ K F W+ E +F LK +LT AP+LIL + +
Sbjct: 654 GLAGFYRRFFKDFSTIVAPLTEVMKKDVGFKWEKAQEEAFQSLKDKLTNAPVLILSEFLK 713
Query: 243 PFVVYCDASKLGLGGVLMQDGKVVAYASRQLRIHEKNYPTHDLELAAVVFVLKIWRHYLY 302
F + CDAS +G+G VLMQD K++A+ S +L NYPT+D EL A+V L+ W+HYL+
Sbjct: 714 TFEIECDASGIGIGAVLMQDQKLIAFFSEKLGGATLNYPTYDKELYALVRALQRWQHYLW 773
Query: 303 GS*FEVFSDHKSLKYLFDQKELNMRQRRWLELLKDCDFGLNYHPGK 348
F + +DH+SLK+L Q++LN R RW+E ++ + + Y GK
Sbjct: 774 PKVFVIHTDHESLKHLKGQQKLNKRHARWVEFIETFAYVIKYKKGK 819
Score = 31.6 bits (70), Expect = 2.0
Identities = 30/117 (25%), Positives = 53/117 (44%), Gaps = 7/117 (5%)
Query: 665 APFETLYGRRCRTPLCWFESGESVLLGPDLVHQTIEKVQMIREKMKAS-QSRQKSYHDKR 723
+PF+ +YG +P S + D + E VQ I E + + + + K Y +
Sbjct: 988 SPFQIVYGFNPISPFDLIPLPLSERVSID-GKKKAELVQQIHENARRNIEEKTKLYAKQA 1046
Query: 724 KKALE---FQEGDHVFLRVTPMTGVGRALKSKKLTPKFIGPYQISERVGTVAYRVGL 777
K F+ GD V++ + A + KL P+ GP++I +R+ AY++ L
Sbjct: 1047 NKGRREQIFEVGDMVWIHLRKERFP--AQRKSKLMPRIDGPFKIIKRINDNAYQLDL 1101
>At4g16910 retrotransposon like protein
Length = 687
Score = 325 bits (833), Expect = 7e-89
Identities = 155/304 (50%), Positives = 214/304 (69%)
Query: 565 LAEIYIHNIVKLHGVPSSIVSDRNFRFTSRFWKSLQDALGSKLRVSSAYHPQADGHSERT 624
+AE YI IV+LHG+P SIVSDR+ RFTS+FWK Q LG+++ +S+AYHPQ DG SERT
Sbjct: 363 IAEKYIDEIVRLHGIPVSIVSDRDTRFTSKFWKPFQKVLGTRVNLSTAYHPQTDGQSERT 422
Query: 625 IQSLEDLLRVCVLEQGGAWDSHLPLIEFTYNNSYHSSIGMAPFETLYGRRCRTPLCWFES 684
IQ+LED+LR CVL+ GG W+ +L L+EF YNNS+ +SIGM+P+E LYGR RTPLCW
Sbjct: 423 IQTLEDMLRACVLDWGGNWEKYLRLVEFAYNNSFQASIGMSPYEALYGRAGRTPLCWTPV 482
Query: 685 GESVLLGPDLVHQTIEKVQMIREKMKASQSRQKSYHDKRKKALEFQEGDHVFLRVTPMTG 744
GE L GP +V +T +K++ ++ K+K +Q RQKSY +KR+K LEFQ GD V+L+ G
Sbjct: 483 GERRLFGPAVVDETTKKMKFLKIKLKEAQDRQKSYANKRRKELEFQVGDLVYLKAMTYKG 542
Query: 745 VGRALKSKKLTPKFIGPYQISERVGTVAYRVGLPPHLSNLHDVFHVSQLRKYVADPSHVI 804
GR KKL P+++GPY++ ERVG VAY++ LPP L H+VFHVSQLRK +++ +
Sbjct: 543 AGRFTSRKKLRPRYVGPYKVIERVGAVAYKLDLPPKLDAFHNVFHVSQLRKCLSEQEESM 602
Query: 805 PRADVQVRDNLTIETLPLRIEYREVKKLRGKDIPLVKVVLGGVTGESLTWELESKMLESY 864
+++N+T+E P+RI + K RGK + L+K++ E TWE E+KM ++
Sbjct: 603 EDVPPGLKENMTVEAWPVRIMDQMKKGTRGKSMDLLKILWNCGGREEYTWETETKMKANF 662
Query: 865 PELF 868
PE F
Sbjct: 663 PEWF 666
Score = 206 bits (523), Expect = 6e-53
Identities = 96/151 (63%), Positives = 119/151 (78%)
Query: 198 LALPLTQLTCKGKSFVWDAQCENSFNELKRRLTTAPILILPKPDEPFVVYCDASKLGLGG 257
+A P+TQLT K +F W +CE SF ELK LT AP+L+LP+ EP+ VY DAS +GLG
Sbjct: 1 MAQPMTQLTGKDTAFNWSEECERSFLELKAMLTNAPVLVLPEEGEPYTVYTDASIVGLGC 60
Query: 258 VLMQDGKVVAYASRQLRIHEKNYPTHDLELAAVVFVLKIWRHYLYGS*FEVFSDHKSLKY 317
VL+Q G V+AYASRQLR HEKNYPT+DLE+AAVVF LKIWR YLYG+ ++F+DHKSLKY
Sbjct: 61 VLIQKGSVIAYASRQLRKHEKNYPTNDLEMAAVVFALKIWRSYLYGAKVQIFTDHKSLKY 120
Query: 318 LFDQKELNMRQRRWLELLKDCDFGLNYHPGK 348
+F Q ELN+RQRRW++L+ D D + YHPGK
Sbjct: 121 IFTQPELNLRQRRWIKLVADYDLNIAYHPGK 151
>At3g31970 hypothetical protein
Length = 1329
Score = 323 bits (827), Expect = 3e-88
Identities = 157/306 (51%), Positives = 220/306 (71%), Gaps = 4/306 (1%)
Query: 565 LAEIYIHNIVKLHGVPSSIVSDRNFRFTSRFWKSLQDALGSKLRVSSAYHPQADGHSERT 624
LA+ Y+ IV+LHGVP SIVSDR+ +FTS FW++ Q +G+K+++S+AYHPQ DG SERT
Sbjct: 1020 LAKKYVSEIVELHGVPVSIVSDRDSKFTSAFWRAFQGEMGTKVQMSTAYHPQTDGQSERT 1079
Query: 625 IQSLEDLLRVCVLEQGGAWDSHLPLIEFTYNNSYHSSIGMAPFETLYGRRCRTPLCWFES 684
IQ+LED+LR+CVL++GG W HL L+EF YNNSY +SI MAPFE LYGR CRTPLCW +
Sbjct: 1080 IQTLEDMLRMCVLDRGGHWADHLSLVEFAYNNSYQASIRMAPFEALYGRPCRTPLCWTQV 1139
Query: 685 GESVLLGPDLVHQTIEKVQMIREKMKASQSRQKSYHDKRKKALEFQEGDHVFLRVTPMTG 744
GE + G D V +T E++++++ MK +Q RQ+SY DKR++ LEF+ GD V+L++ + G
Sbjct: 1140 GERSIYGADYVLETTERIRVLKLNMKEAQDRQRSYADKRRRELEFEVGDRVYLKMAMLRG 1199
Query: 745 VGRALKSKKLTPKFIGPYQISERVGTVAYRVGLPPHLSNLHDVFHVSQLRKYVADPSHVI 804
R++ KLTP+++GP++I ERVG VAYR+ LP + H VFHVS LRK + V+
Sbjct: 1200 PNRSISETKLTPRYMGPFRIVERVGPVAYRLELPDVMRAFHKVFHVSMLRKCLHKDDEVL 1259
Query: 805 PRADVQVRDNLTIETLPLRIEYREVKKLRGKDIPLVKVV--LGGVTGESLTWELESKMLE 862
+ ++ N+T+E P+RI R +K+LR K IPL+KV+ GVT E TWE E++M
Sbjct: 1260 AKILEDLQPNMTLEARPVRILERRIKELRRKKIPLIKVLWNCDGVTEE--TWEPEARMKA 1317
Query: 863 SYPELF 868
S+ + F
Sbjct: 1318 SFKKWF 1323
Score = 244 bits (622), Expect = 2e-64
Identities = 133/324 (41%), Positives = 183/324 (56%), Gaps = 67/324 (20%)
Query: 25 MDQLVGARVFSKIDLSSGYHQIKVKDEDMQKTAFRTRYGHYEYKVMPFGVTNAPGVFMEY 84
M + VG S I + + I + + +++KTAFRTRYGH+E+ VMPFG+TN P FM
Sbjct: 552 MPESVGQVAVSDIRVVHEFEDIPIAEANVRKTAFRTRYGHFEFVVMPFGLTNIPTAFMRL 611
Query: 85 MNRIFHAYLDKFVVVFSDDILIYSKNEEEHAEHMKIVLQLLKEKKLYAKLSKCEFWLSEV 144
MN +F +LD+FV++F DDIL+YSK+ EEH ++ ++ S E +EV
Sbjct: 612 MNSVFQEFLDEFVIIFIDDILVYSKSPEEH--------------EVQSEESDGEAAGAEV 657
Query: 145 SFLGHIISGSGIVVDPSKVDAVSQWETPKSVTEIRSFLGLAGYYRRFIEGFSKLALPLTQ 204
G+ VD K++A+ W P + TEIRSFLGLAGYY+RF++ F+ +A P+T+
Sbjct: 658 ----------GVSVDLEKIEAIRDWPRPTNATEIRSFLGLAGYYKRFVKVFASMAQPMTK 707
Query: 205 LTCKGKSFVWDAQCENSFNELKRRLTTAPILILPKPDEPFVVYCDASKLGLGGVLMQDGK 264
LT K FVW +C+ F LK LT+ P+L LP+ EP++VY DAS++GL VLMQ GK
Sbjct: 708 LTGKDVPFVWSPECDEGFMSLKEMLTSTPVLALPEHGEPYMVYTDASRVGLDCVLMQRGK 767
Query: 265 VVAYASRQLRIHEKNYPTHDLELAAVVFVLKIWRHYLYGS*FEVFSDHKSLKYLFDQKEL 324
VF+DHKSLKY+F Q EL
Sbjct: 768 -------------------------------------------VFTDHKSLKYIFTQPEL 784
Query: 325 NMRQRRWLELLKDCDFGLNYHPGK 348
N+RQRRW+EL+ D D + YH GK
Sbjct: 785 NLRQRRWMELVADYDLEIAYHSGK 808
>At1g35370 hypothetical protein
Length = 1447
Score = 318 bits (814), Expect = 1e-86
Identities = 161/347 (46%), Positives = 228/347 (65%), Gaps = 9/347 (2%)
Query: 2 IDYRQLNKVTIKNRYPLPRIDDLMDQLVGARVFSKIDLSSGYHQIKVKDEDMQKTAFRTR 61
+DY +LN +T+K+R+ +P I+DLMD+L G+ VFSKIDL +GYHQ+++ +D+QKTAF+T
Sbjct: 634 VDYTELNGMTVKDRFLIPLIEDLMDELGGSVVFSKIDLRAGYHQVRMDPDDIQKTAFKTH 693
Query: 62 YGHYEYKVMPFGVTNAPGVFMEYMNRIFHAYLDKFVVVFSDDILIYSKNEEEHAEHMKIV 121
GH+EY VM FG+TNAP F MN +F +L KFV+VF DDILIYS + EEH EH+++V
Sbjct: 694 NGHFEYLVMLFGLTNAPATFQSLMNSVFRDFLRKFVLVFFDDILIYSSSIEEHKEHLRLV 753
Query: 122 LQLLKEKKLYAKLSKCEFWLSEVSFLGHIISGSGIVVDPSKVDAVSQWETPKSVTEIRSF 181
++++ KL+AK SK LGH IS I DP+K+ AV +W TP +V ++R F
Sbjct: 754 FEVMRLHKLFAKGSK--------EHLGHFISAREIETDPAKIQAVKEWPTPTTVKQVRGF 805
Query: 182 LGLAGYYRRFIEGFSKLALPLTQLTCKGKSFVWDAQCENSFNELKRRLTTAPILILPKPD 241
LG AGYYRRF+ F +A PL LT K F W + +++F+ LK L AP+L LP D
Sbjct: 806 LGFAGYYRRFVRNFGVIAGPLHALT-KTDGFCWSLEAQSAFDTLKAVLCNAPVLALPVFD 864
Query: 242 EPFVVYCDASKLGLGGVLMQDGKVVAYASRQLRIHEKNYPTHDLELAAVVFVLKIWRHYL 301
+ F+V DA G+ VLMQ G +AY SRQL+ + + ++ EL A +F ++ WRHYL
Sbjct: 865 KQFMVETDACGQGIRAVLMQKGHPLAYISRQLKGKQLHLSIYEKELLAFIFAVRKWRHYL 924
Query: 302 YGS*FEVFSDHKSLKYLFDQKELNMRQRRWLELLKDCDFGLNYHPGK 348
S F + +D +SLKYL +Q+ Q++WL L + D+ + Y GK
Sbjct: 925 LPSHFIIKTDQRSLKYLLEQRLNTPVQQQWLPKLLEFDYEIQYRQGK 971
Score = 140 bits (353), Expect = 3e-33
Identities = 75/208 (36%), Positives = 117/208 (56%), Gaps = 1/208 (0%)
Query: 565 LAEIYIHNIVKLHGVPSSIVSDRNFRFTSRFWKSLQDALGSKLRVSSAYHPQADGHSERT 624
+A+ ++ N+ K HG P+SIVSDR+ FTS FWK G +LR+SSAYHPQ+DG +E
Sbjct: 1169 VAQAFLDNVYKHHGCPTSIVSDRDVLFTSDFWKEFFKLQGVELRMSSAYHPQSDGQTEVV 1228
Query: 625 IQSLEDLLRVCVLEQGGAWDSHLPLIEFTYNNSYHSSIGMAPFETLYGRRCRTPLCWFES 684
+ LE+ LR + W+ LPL E+ YN +YHSS M PFE +YG+ L +
Sbjct: 1229 NRCLENYLRCMCHARPHLWNKWLPLAEYWYNTNYHSSSQMTPFELVYGQAPPIHLPYLPG 1288
Query: 685 GESVLLGPDLVHQTIEKVQMIREKMKASQSRQKSYHDKRKKALEFQEGDHVFLRVTPMTG 744
V + + + + ++ + +Q R K + D+ + F GD V++++ P
Sbjct: 1289 KSKVAVVARSLQERENMLLFLKFHLMRAQHRMKQFADQHRTERTFDIGDFVYVKLQPYRQ 1348
Query: 745 VGRALK-SKKLTPKFIGPYQISERVGTV 771
L+ ++KL+PK+ GPY+I E+ G V
Sbjct: 1349 QSVVLRVNQKLSPKYFGPYKIIEKCGEV 1376
>At2g05610 putative retroelement pol polyprotein
Length = 780
Score = 286 bits (733), Expect = 3e-77
Identities = 147/347 (42%), Positives = 207/347 (59%), Gaps = 52/347 (14%)
Query: 2 IDYRQLNKVTIKNRYPLPRIDDLMDQLVGARVFSKIDLSSGYHQIKVKDEDMQKTAFRTR 61
+DYR+LN +T+K+R+P+P I+DLMD+L G+ V+SKIDL +GYHQ+++ D+ KTAF+T
Sbjct: 97 VDYRELNGMTVKDRFPIPLIEDLMDELGGSNVYSKIDLRAGYHQVRMDPLDIHKTAFKTH 156
Query: 62 YGHYEYKVMPFGVTNAPGVFMEYMNRIFHAYLDKFVVVFSDDILIYSKNEEEHAEHMKIV 121
GHYEY VMPFG+TNAP F MN F +L KFV+VF DDILIYS + EEH +H++ V
Sbjct: 157 NGHYEYLVMPFGLTNAPASFQSLMNSFFKPFLRKFVLVFFDDILIYSTSMEEHKKHLEAV 216
Query: 122 LQLLKEKKLYAKLSKCEFWLSEVSFLGHIISGSGIVVDPSKVDAVSQWETPKSVTEIRSF 181
++++ L+AK+SKC F + V +LGH ISG GI DP+K+ AV W P ++ ++ F
Sbjct: 217 FEVMRVHHLFAKMSKCAFAVPRVEYLGHFISGEGIATDPAKIKAVQDWPVPVNLKQLCGF 276
Query: 182 LGLAGYYRRFIEGFSKLALPLTQLTCKGKSFVWDAQCENSFNELKRRLTTAPILILPKPD 241
LGL GYYRRF
Sbjct: 277 LGLTGYYRRF-------------------------------------------------- 286
Query: 242 EPFVVYCDASKLGLGGVLMQDGKVVAYASRQLRIHEKNYPTHDLELAAVVFVLKIWRHYL 301
FVV DA G+G VLMQ+G +A+ SRQL+ + + ++ EL AV+FV++ WRHYL
Sbjct: 287 --FVVEMDACGHGIGAVLMQEGHPLAFISRQLKGKQLHLSIYEKELLAVIFVVRKWRHYL 344
Query: 302 YGS*FEVFSDHKSLKYLFDQKELNMRQRRWLELLKDCDFGLNYHPGK 348
S F + +D +SLKYL +Q+ Q++WL L + D+ + Y GK
Sbjct: 345 ISSHFIIKTDQRSLKYLLEQRLNTPIQQQWLPKLLEFDYEIQYKQGK 391
Score = 79.7 bits (195), Expect = 6e-15
Identities = 48/156 (30%), Positives = 84/156 (53%), Gaps = 5/156 (3%)
Query: 664 MAPFETLYGRRCRTPLCWFESGESVLLGPDLVHQTIEKVQMIREKMKASQSRQKSYHDKR 723
M P+E +YG+ L + V + + + + ++ + +Q R K D+
Sbjct: 625 MTPYEAVYGQPPPLHLPYLPGESKVAVVARSMQERESMILFLKFHLMRAQHRMKQLADQH 684
Query: 724 KKALEFQEGDHVFLRVTPMTGVGRALKS-KKLTPKFIGPYQISERVGTVAYRVGLPPHLS 782
EF+ GD+VF+++ P ++S +KL+PK+ GPY++ +R G VAY++ LP + S
Sbjct: 685 ITEREFEVGDYVFVKLQPYRQQSVVMRSTQKLSPKYFGPYKVIDRCGEVAYKLQLPAN-S 743
Query: 783 NLHDVFHVSQLRKY---VADPSHVIPRADVQVRDNL 815
+H VFHVSQLR V +H++ + +R+NL
Sbjct: 744 QVHPVFHVSQLRVLVGTVTTSTHLLRCYLMSLRENL 779
Score = 30.4 bits (67), Expect = 4.5
Identities = 12/20 (60%), Positives = 16/20 (80%)
Query: 565 LAEIYIHNIVKLHGVPSSIV 584
+A+ Y+ N+ KLHG PSSIV
Sbjct: 589 VAQAYLDNVFKLHGCPSSIV 608
>At4g07830 putative reverse transcriptase
Length = 611
Score = 270 bits (689), Expect = 3e-72
Identities = 144/308 (46%), Positives = 201/308 (64%), Gaps = 25/308 (8%)
Query: 563 AQLAEIYIHNIVKLHGVPSSIVSDRNFRFTSRFWKSLQDALGSKLRVSSAYHPQADGHSE 622
A LA+ Y+ IVKLHGVP SIVSDR+ +FTS FW++ Q +G+K+++S+AYHPQ DG SE
Sbjct: 285 AVLAKKYVSEIVKLHGVPVSIVSDRDSKFTSAFWRAFQAEMGTKVQMSTAYHPQTDGQSE 344
Query: 623 RTIQSLEDLLRVCVLEQGGAWDSHLPLIEFTYNNSYHSSIGMAPFETLYGRRCRTPLCWF 682
RTIQ+LED+LR+CVL+ G W HL L+EF YNNSY +SIGMAPFE LYGR CRT LCW
Sbjct: 345 RTIQTLEDMLRMCVLDWRGHWADHLSLVEFAYNNSYQASIGMAPFEVLYGRPCRT-LCWT 403
Query: 683 ESGESVLLGPDLVHQTIEKVQMIREKMKASQSRQKSYHDKRKKALEFQEGDHVFLRVTPM 742
+ GE + G D V + E++++++ MK +Q+RQ+SY DKR+K LEF+ GD V
Sbjct: 404 QVGERSIYGADYVQEITERIRVLKLNMKEAQNRQRSYADKRRKELEFEVGDSV------- 456
Query: 743 TGVGRALKSKKLTPKFIGPYQISERVGTVAYRVGLPPHLSNLHDVFHVSQLRKYVADPSH 802
+ G +S+ +RVG VA+R+ L + H VFHVS LRK +
Sbjct: 457 SQDGHVARSE-------------QRVGPVAFRLELSDVMRAFHKVFHVSMLRKCLHKDDE 503
Query: 803 VIPRADVQVRDNLTIETLPLRIEYREVKKLRGKDIPLVKVV--LGGVTGESLTWELESKM 860
V+ + ++ N+T+E P+R+ R +K+LR K IPL+KV+ GVT E TWE E+++
Sbjct: 504 VLAKIPEDLQPNMTLEARPVRVLERRIKELRRKKIPLIKVLRNCDGVTEE--TWEPEARL 561
Query: 861 LESYPELF 868
+ + F
Sbjct: 562 KARFKKWF 569
Score = 98.2 bits (243), Expect = 2e-20
Identities = 49/89 (55%), Positives = 59/89 (66%), Gaps = 18/89 (20%)
Query: 260 MQDGKVVAYASRQLRIHEKNYPTHDLELAAVVFVLKIWRHYLYGS*FEVFSDHKSLKYLF 319
MQ GKV+AY SRQL+ HE NYPTHDLE+AAV F+DHKSLKY+F
Sbjct: 1 MQRGKVIAYGSRQLKKHEGNYPTHDLEMAAV------------------FTDHKSLKYIF 42
Query: 320 DQKELNMRQRRWLELLKDCDFGLNYHPGK 348
Q ELN+R RRW++L+ D D + YHPGK
Sbjct: 43 TQLELNLRLRRWMKLVADYDLEIAYHPGK 71
>At1g36120 putative reverse transcriptase gb|AAD22339.1
Length = 1235
Score = 268 bits (684), Expect = 1e-71
Identities = 138/308 (44%), Positives = 197/308 (63%), Gaps = 33/308 (10%)
Query: 563 AQLAEIYIHNIVKLHGVPSSIVSDRNFRFTSRFWKSLQDALGSKLRVSSAYHPQADGHSE 622
A L + Y+ IVKLHGVP SI+S R+ +FTS FW++ Q +G+K+++S+AYHPQ DG SE
Sbjct: 953 AVLPKKYVSEIVKLHGVPVSILSHRDSKFTSAFWRAFQVEMGTKVQMSTAYHPQTDGQSE 1012
Query: 623 RTIQSLEDLLRVCVLEQGGAWDSHLPLIEFTYNNSYHSSIGMAPFETLYGRRCRTPLCWF 682
RTIQ+LED+L++CVL+ GG W HL L++F YNNSY +SIGMAPFE LYGR CRT LCW
Sbjct: 1013 RTIQTLEDMLQMCVLDWGGHWADHLSLVKFAYNNSYQASIGMAPFEALYGRPCRTLLCWT 1072
Query: 683 ESGESVLLGPDLVHQTIEKVQMIREKMKASQSRQKSYHDKRKKALEFQEGDHVFLRVTPM 742
+ GE + G D V +T E++++++ MK +Q RQ+SY DKR++ LEF+ G
Sbjct: 1073 QVGEKSIYGADYVQETTERIRVLKLNMKEAQDRQRSYADKRRRELEFEVGT--------- 1123
Query: 743 TGVGRALKSKKLTPKFIGPYQISERVGTVAYRVGLPPHLSNLHDVFHVSQLRKYVADPSH 802
+I ERVG VAYR+ LP + H+VFHVS LRK +
Sbjct: 1124 --------------------EIVERVGPVAYRLELPDVMRAFHNVFHVSMLRKCLHKDDE 1163
Query: 803 VIPRADVQVRDNLTIETLPLRIEYREVKKLRGKDIPLVKVV--LGGVTGESLTWELESKM 860
V+ + ++ N+T+E P+R+ R +K++R K IP++KV+ GVT E TWE E+++
Sbjct: 1164 VLAKIPEDLQPNMTLEARPVRVLERRIKEVRRKKIPMIKVLWDCDGVTEE--TWEPEARI 1221
Query: 861 LESYPELF 868
+ + F
Sbjct: 1222 KARFKKWF 1229
Score = 154 bits (390), Expect = 2e-37
Identities = 68/108 (62%), Positives = 88/108 (80%)
Query: 7 LNKVTIKNRYPLPRIDDLMDQLVGARVFSKIDLSSGYHQIKVKDEDMQKTAFRTRYGHYE 66
LN+VT+KN+YPLPRID+L+DQL GA FSKIDL+ GYHQ + + D++KTAFRTRYGH+E
Sbjct: 576 LNRVTLKNKYPLPRIDELLDQLRGATCFSKIDLTPGYHQFPIAEADVRKTAFRTRYGHFE 635
Query: 67 YKVMPFGVTNAPGVFMEYMNRIFHAYLDKFVVVFSDDILIYSKNEEEH 114
+ VMPFG+TNAP M MN +F +LD+FV++F DDIL+Y K+ EEH
Sbjct: 636 FVVMPFGLTNAPTALMRLMNSVFQEFLDEFVIIFIDDILVYFKSPEEH 683
Score = 140 bits (353), Expect = 3e-33
Identities = 72/156 (46%), Positives = 89/156 (56%), Gaps = 39/156 (25%)
Query: 193 EGFSKLALPLTQLTCKGKSFVWDAQCENSFNELKRRLTTAPILILPKPDEPFVVYCDASK 252
+GF+ +A P+T+LT K FVW +CE F
Sbjct: 691 KGFASMAQPMTKLTEKDIPFVWSPECEEGFR----------------------------- 721
Query: 253 LGLGGVLMQDGKVVAYASRQLRIHEKNYPTHDLELAAVVFVLKIWRHYLYGS*FEVFSDH 312
GKV+ YASRQLR HE NYPTHDLE+AA++F LKIW YLYG +VF+DH
Sbjct: 722 ----------GKVIVYASRQLRKHEGNYPTHDLEMAAIIFALKIWGSYLYGGKVQVFTDH 771
Query: 313 KSLKYLFDQKELNMRQRRWLELLKDCDFGLNYHPGK 348
KSLK +F Q ELN+RQRRW+EL+ D D + YHPGK
Sbjct: 772 KSLKDIFTQPELNLRQRRWMELVADYDLEIAYHPGK 807
>At3g29490 hypothetical protein
Length = 438
Score = 267 bits (682), Expect = 2e-71
Identities = 136/308 (44%), Positives = 197/308 (63%), Gaps = 24/308 (7%)
Query: 563 AQLAEIYIHNIVKLHGVPSSIVSDRNFRFTSRFWKSLQDALGSKLRVSSAYHPQADGHSE 622
A LA+ Y+ IVKLHGVP+ +G+K+++S+ YHPQ DG E
Sbjct: 50 AVLAKKYVSEIVKLHGVPAE--------------------MGTKVQMSTPYHPQTDGQFE 89
Query: 623 RTIQSLEDLLRVCVLEQGGAWDSHLPLIEFTYNNSYHSSIGMAPFETLYGRRCRTPLCWF 682
RTIQ+LED+LR+CVL+ GG W HL L+EF YNNSY + IGMAPFE LYGR CRTPLCW
Sbjct: 90 RTIQTLEDMLRMCVLDWGGHWADHLSLVEFAYNNSYQAGIGMAPFEALYGRPCRTPLCWT 149
Query: 683 ESGESVLLGPDLVHQTIEKVQMIREKMKASQSRQKSYHDKRKKALEFQEGDHVFLRVTPM 742
+ GE + G D V +T E++++++ MK +Q RQ SY DKR++ LEF+ GD V+L++ +
Sbjct: 150 QVGERSIYGADYVQETTERIRVLKLNMKEAQDRQWSYADKRRRELEFEVGDRVYLKMAML 209
Query: 743 TGVGRALKSKKLTPKFIGPYQISERVGTVAYRVGLPPHLSNLHDVFHVSQLRKYVADPSH 802
G R++ KL+ +++GP++I ERVG VAY + LP + H VFHVS LRK +
Sbjct: 210 RGPNRSISETKLSLRYMGPFRIVERVGPVAYMLELPDVMRAFHKVFHVSMLRKCLHKDDE 269
Query: 803 VIPRADVQVRDNLTIETLPLRIEYREVKKLRGKDIPLVKVV--LGGVTGESLTWELESKM 860
V+ + ++ N+T+E +R+ R +K+L+ K I L+KV+ GVT E TW+ E++M
Sbjct: 270 VLAKIPEDLQPNMTLEARQVRVLERRIKELQRKKISLIKVLWDCDGVTEE--TWQPEARM 327
Query: 861 LESYPELF 868
+ + F
Sbjct: 328 KARFKKWF 335
>At4g03840 putative transposon protein
Length = 973
Score = 246 bits (627), Expect = 5e-65
Identities = 123/274 (44%), Positives = 173/274 (62%), Gaps = 19/274 (6%)
Query: 595 FWKSLQDALGSKLRVSSAYHPQADGHSERTIQSLEDLLRVCVLEQGGAWDSHLPLIEFTY 654
FWK+ Q ALG+++ +S+AYHPQ DG SERTIQ+LED+LR C L+ GG W+ +L L
Sbjct: 690 FWKAFQKALGTRVNLSTAYHPQTDGQSERTIQTLEDMLRACALDWGGNWEKYLRL----- 744
Query: 655 NNSYHSSIGMAPFETLYGRRCRTPLCWFESGESVLLGPDLVHQTIEKVQMIREKMKASQS 714
LYGR CRTPLCW GE L GP +V +T E+++ ++ K+K +Q
Sbjct: 745 --------------ALYGRACRTPLCWTPVGERRLFGPIIVDETTERMKFLKIKLKEAQD 790
Query: 715 RQKSYHDKRKKALEFQEGDHVFLRVTPMTGVGRALKSKKLTPKFIGPYQISERVGTVAYR 774
RQKSY +KR+K LEFQ D V+L+ G GR KKL+P+++GPY++ ERVG VAY+
Sbjct: 791 RQKSYANKRRKELEFQVEDLVYLKAMTYKGAGRFTSRKKLSPRYVGPYKVIERVGAVAYK 850
Query: 775 VGLPPHLSNLHDVFHVSQLRKYVADPSHVIPRADVQVRDNLTIETLPLRIEYREVKKLRG 834
+ LPP L+ H+VFHVSQLRK +++ + +++N+T+E P++I R K RG
Sbjct: 851 LDLPPKLNAFHNVFHVSQLRKCLSNQEESVEDVPPGLKENMTVEAWPVQIMDRMTKGTRG 910
Query: 835 KDIPLVKVVLGGVTGESLTWELESKMLESYPELF 868
K L+KV+ E TWE E+KM ++ E F
Sbjct: 911 KSRDLLKVLWNCGGREQYTWETENKMKANFSEWF 944
Score = 189 bits (479), Expect = 8e-48
Identities = 88/139 (63%), Positives = 106/139 (75%)
Query: 210 KSFVWDAQCENSFNELKRRLTTAPILILPKPDEPFVVYCDASKLGLGGVLMQDGKVVAYA 269
K W CE +F ELK LT AP+L+LP+ EP+ VY DAS +GL VLMQ G V+AYA
Sbjct: 371 KCSFWQRSCEKNFLELKAMLTNAPVLVLPEEGEPYTVYTDASVVGLECVLMQKGSVIAYA 430
Query: 270 SRQLRIHEKNYPTHDLELAAVVFVLKIWRHYLYGS*FEVFSDHKSLKYLFDQKELNMRQR 329
SRQLR HEKNYPTHDLE+AAVVF LKIWR YLYG+ ++++DHKSLKY+F Q ELN+RQR
Sbjct: 431 SRQLRKHEKNYPTHDLEMAAVVFALKIWRSYLYGAKVQIYTDHKSLKYIFTQPELNLRQR 490
Query: 330 RWLELLKDCDFGLNYHPGK 348
RW+EL+ D D + YH GK
Sbjct: 491 RWMELVADYDLDIAYHAGK 509
Score = 125 bits (314), Expect = 1e-28
Identities = 54/89 (60%), Positives = 73/89 (81%)
Query: 52 DMQKTAFRTRYGHYEYKVMPFGVTNAPGVFMEYMNRIFHAYLDKFVVVFSDDILIYSKNE 111
D++KTAF TRYGH+E+ VMPFG+TNAP FM+ MN +F +LD+FV++F DDIL+YSK+
Sbjct: 287 DVRKTAFLTRYGHFEFVVMPFGLTNAPTAFMKMMNGVFRDFLDEFVIIFIDDILVYSKSW 346
Query: 112 EEHAEHMKIVLQLLKEKKLYAKLSKCEFW 140
E H EH++ VL+ L+E +L+AKLSKC FW
Sbjct: 347 EAHQEHLRAVLEQLREHELFAKLSKCSFW 375
>At1g37060 Athila retroelment ORF 1, putative
Length = 1734
Score = 224 bits (571), Expect = 2e-58
Identities = 127/338 (37%), Positives = 184/338 (53%), Gaps = 24/338 (7%)
Query: 2 IDYRQLNKVTIKNRYPLPRIDDLMDQLVGARVFSKIDLSSGYHQIKVKDEDMQKTAFRTR 61
I+YR+LN + K +PLP ID ++++L + +D SG+ QI + D KT F
Sbjct: 972 IEYRKLNVASRKEHFPLPFIDHMLERLANHPYYCFLDSYSGFFQIPIHPNDQGKTTFTCP 1031
Query: 62 YGHYEYKVMPFGVTNAPGVFMEYMNRIFHAYLDKFVVVFSDDILIYSKNEEEHAEHMKIV 121
YG + YK MPFG+ NAP F M IF +++ V VF DD +Y + ++ V
Sbjct: 1032 YGTFAYKRMPFGLCNAPATFQRCMTSIFSDLIEEMVEVFMDDFSVYGSSFSSCLLNLCRV 1091
Query: 122 LQLLKEKKLYAKLSKCEFWLSEVSFLGHIISGSGIVVDPSKVDAVSQWETPKSVTEIRSF 181
L+ +E L KC F + E LG IS GI VD +K+D + Q + PK+V +IRSF
Sbjct: 1092 LKRCEETNLVLNWEKCHFMVREGIVLGRKISEEGIEVDKAKIDVMMQLQPPKTVKDIRSF 1151
Query: 182 LGLAGYYRRFIEGFSKLALPLTQLTCKGKSFVWDAQCENSFNELKRRLTTAPILILPKPD 241
LG AG+YR FI+ FSKLA PLT+L CK F +D +C +F +K L TAPI+ P D
Sbjct: 1152 LGHAGFYRIFIKDFSKLARPLTRLLCKETEFAFDDECLTAFKLIKEALITAPIVQAPNWD 1211
Query: 242 EPFVVYCDASKLGLGGVLMQDGKVVAYASRQLRIHEKNYPTHDLELAAVVFVLKIWRHYL 301
PF + + M D +V Y T + EL AVVF + +R YL
Sbjct: 1212 FPFEI-----------ITMDDAQV-------------RYATTEKELLAVVFAFEKFRSYL 1247
Query: 302 YGS*FEVFSDHKSLKYLFDQKELNMRQRRWLELLKDCD 339
GS +++DH +L++++ +K+ R RW+ LL++ D
Sbjct: 1248 VGSKVTIYTDHAALRHIYAKKDTKPRLLRWILLLQEFD 1285
Score = 56.2 bits (134), Expect = 8e-08
Identities = 51/202 (25%), Positives = 90/202 (44%), Gaps = 29/202 (14%)
Query: 578 GVPSSIVSDRNFRFTSRFWKSLQDALGSKLRVSSAYHPQADGHSERTIQSLEDLLRVCVL 637
GVP ++SD F ++ +++L G K + S G E + + ++ +L V
Sbjct: 1501 GVPRIVISDGGKHFINKGFENLLKKHGVKHKTS--------GQVEISNREIKAILEKTVG 1552
Query: 638 EQGGAWDSHLPLIEFTYNNSYHSSIGMAPFETLYGRRCRTP--LCWFESGESVLLGPDLV 695
W + L + Y ++ + IG PF LYG+ C P L + LL D+
Sbjct: 1553 STRKDWSAKLNDTLWAYRTAFKTPIGTTPFNLLYGKSCHLPVELEYKAMWAVKLLNFDI- 1611
Query: 696 HQTIEKVQMIR------------EKMKASQSRQKSYHDKRKKALEFQEGDHVFLRVTPMT 743
+T E+ ++I+ E K + R KS+HDK+ + +F+ GD V L + +
Sbjct: 1612 -KTAEEKRLIQLNDLNKIRLEAYESSKIYKERTKSFHDKKIVSRDFKVGDQVLLFNSRL- 1669
Query: 744 GVGRALKSKKLTPKFIGPYQIS 765
L KL ++ GP+ ++
Sbjct: 1670 ----RLFPGKLKSRWSGPFSVT 1687
>At2g06470 putative retroelement pol polyprotein
Length = 899
Score = 221 bits (562), Expect = 2e-57
Identities = 112/254 (44%), Positives = 158/254 (62%), Gaps = 27/254 (10%)
Query: 577 HGVPSSIVSDRNFRFTSRFWKSL------QDALGSKLRVSSAYHPQADGHSERTIQSLED 630
H VPS ++ +N W + Q ALG+++ +S+AYHPQ DG SERTIQ+LED
Sbjct: 665 HQVPSGLL--QNLPIPEWKWDHITMDFAFQKALGTRVNLSTAYHPQTDGQSERTIQTLED 722
Query: 631 LLRVCVLEQGGAWDSHLPLIEFTYNNSYHSSIGMAPFETLYGRRCRTPLCWFESGESVLL 690
+LR CVL+ GG W+ +L L LYGR CRTPLCW GE L
Sbjct: 723 MLRACVLDWGGNWEKYLTL-------------------ALYGRACRTPLCWTPVGERRLF 763
Query: 691 GPDLVHQTIEKVQMIREKMKASQSRQKSYHDKRKKALEFQEGDHVFLRVTPMTGVGRALK 750
GP +V +T E+++ ++ K+K + RQKSY +KR+K LEFQ GD V+L+ G GR
Sbjct: 764 GPTIVDETTERMKFLKIKLKEAHDRQKSYANKRRKELEFQVGDLVYLKAMTYKGAGRFTS 823
Query: 751 SKKLTPKFIGPYQISERVGTVAYRVGLPPHLSNLHDVFHVSQLRKYVADPSHVIPRADVQ 810
KKL+P+++GPY++ ERVG VAY++ LPP L+ H+VFHVSQLRK ++D +
Sbjct: 824 RKKLSPRYVGPYKVIERVGAVAYKLDLPPKLNAFHNVFHVSQLRKCLSDQEESVEDVPPG 883
Query: 811 VRDNLTIETLPLRI 824
+++N+T+E P+RI
Sbjct: 884 LKENMTVEAWPVRI 897
Score = 192 bits (487), Expect = 9e-49
Identities = 90/139 (64%), Positives = 107/139 (76%)
Query: 210 KSFVWDAQCENSFNELKRRLTTAPILILPKPDEPFVVYCDASKLGLGGVLMQDGKVVAYA 269
K W CE SF ELK LT AP+L+LP+ EP+ VY DAS +GLG VLMQ G V+AYA
Sbjct: 371 KCSFWQRSCEKSFLELKAMLTNAPVLVLPEEGEPYTVYTDASIVGLGCVLMQKGSVIAYA 430
Query: 270 SRQLRIHEKNYPTHDLELAAVVFVLKIWRHYLYGS*FEVFSDHKSLKYLFDQKELNMRQR 329
SRQL HEKNYPTHDLE+AAVVF LKIWR YLYG+ ++++DHKSLKY+F Q ELN+RQR
Sbjct: 431 SRQLWKHEKNYPTHDLEMAAVVFALKIWRSYLYGAKVQIYTDHKSLKYIFIQPELNLRQR 490
Query: 330 RWLELLKDCDFGLNYHPGK 348
RW+EL+ D D + YHPGK
Sbjct: 491 RWMELVADYDLDIAYHPGK 509
Score = 129 bits (324), Expect = 7e-30
Identities = 59/98 (60%), Positives = 78/98 (79%), Gaps = 2/98 (2%)
Query: 52 DMQKTAFRTRYGHYEYKVMPFGVTNAPGVFMEYMNRIFHAYLDKFVVVFSDDILIYSKNE 111
D++KTAFRTRYGH+E+ VMPFG+TNAP FM+ MN +F +LD+FV++F DDIL+YSK+
Sbjct: 287 DVRKTAFRTRYGHFEFVVMPFGLTNAPAAFMKMMNGVFRDFLDEFVIIFIDDILVYSKSW 346
Query: 112 EEHAEHMKIVLQLLKEKKLYAKLSKCEFW--LSEVSFL 147
E H EH++ VL+ L+E +L+AKLSKC FW E SFL
Sbjct: 347 EAHQEHLRAVLERLREHELFAKLSKCSFWQRSCEKSFL 384
>At3g29480 hypothetical protein
Length = 718
Score = 219 bits (557), Expect = 7e-57
Identities = 114/232 (49%), Positives = 151/232 (64%), Gaps = 23/232 (9%)
Query: 120 IVLQLLKEKKLYAKLSKCEFWLSEVSFLGH---IISGSGIVVDPSKVDAVSQWETPKSVT 176
+V+ ++ +K+ K CE +L +S + +G+ VD K++A+ W P + T
Sbjct: 379 LVISAVQAEKMIKK--DCEAYLVTISMKSDGEATGAEAGVSVDLEKIEAIKDWPRPTNAT 436
Query: 177 EIRSFLGLAGYYRRFIEGFSKLALPLTQLTCKGKSFVWDAQCENSFNELKRRLTTAPILI 236
EIRSFLGLAGYYRRF++GF+ +A PLT+LT K FVW +CE F LK LT+ P+L
Sbjct: 437 EIRSFLGLAGYYRRFVKGFASMAPPLTKLTGKNVPFVWSPECEEGFVSLKEILTSTPVLA 496
Query: 237 LPKPDEPFVVYCDASKLGLGGVLMQDGKVVAYASRQLRIHEKNYPTHDLELAAVVFVLKI 296
LP+ E ++VY DAS++GLG VLMQ GKV+AYASRQLR HE NYPTHDLE++A
Sbjct: 497 LPEHGESYMVYTDASRVGLGCVLMQRGKVIAYASRQLRKHEGNYPTHDLEMSA------- 549
Query: 297 WRHYLYGS*FEVFSDHKSLKYLFDQKELNMRQRRWLELLKDCDFGLNYHPGK 348
VF+DHKSLKY+ Q ELN+RQRRW+EL+ D D + YH GK
Sbjct: 550 -----------VFTDHKSLKYIITQPELNLRQRRWMELVADYDLEIAYHHGK 590
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.337 0.148 0.477
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,514,633
Number of Sequences: 26719
Number of extensions: 760114
Number of successful extensions: 2893
Number of sequences better than 10.0: 71
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 2702
Number of HSP's gapped (non-prelim): 140
length of query: 869
length of database: 11,318,596
effective HSP length: 108
effective length of query: 761
effective length of database: 8,432,944
effective search space: 6417470384
effective search space used: 6417470384
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 64 (29.3 bits)
Medicago: description of AC121241.13