BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC121241.11 + phase: 0 /pseudo
(175 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g41690 hypothetical protein 104 3e-23
At1g37060 Athila retroelment ORF 1, putative 103 4e-23
At4g07640 putative athila transposon protein 101 2e-22
At3g30655 hypothetical protein, 3' partial 101 2e-22
At2g13260 putative Athila retroelement ORF1 protein 100 5e-22
At4g08050 99 9e-22
At2g07480 F9A16.15 97 4e-21
At2g06310 putative Athila retroelement ORF1 protein 97 6e-21
At2g10670 pseudogene 94 4e-20
At2g06160 putative Athila retroelement ORF1 protein 94 4e-20
At4g07780 putative athila transposon protein 92 1e-19
At3g32000 unknown protein 91 4e-19
At3g30630 hypothetical protein 89 9e-19
At1g38440 hypothetical protein 80 6e-16
At3g32890 Athila ORF 1, putative 77 4e-15
At4g03790 putative athila-like protein 77 5e-15
At3g42260 putative protein 74 4e-14
At2g10740 pseudogene 73 7e-14
At3g31340 Athila ORF 1, putative 70 4e-13
At1g36130 hypothetical protein 70 6e-13
>At1g41690 hypothetical protein
Length = 371
Score = 104 bits (259), Expect = 3e-23
Identities = 57/120 (47%), Positives = 78/120 (64%), Gaps = 8/120 (6%)
Query: 14 SSDEPYD-----AILYPTVEGNNFEIKSALIYLVQENQFFGSPTEDPNLHVSIFLRLSGT 68
+SD P++ I+ P V+ NNFEIKS+LI +VQ N+F G P EDP H+ F RL
Sbjct: 16 ASDFPHNHNQRHGIVPPPVQNNNFEIKSSLIAMVQGNKFHGLPMEDPLDHLDEFERLCSL 75
Query: 69 LKAN---QEAVRLHLFPFSLRDRASAWFHSLKIGSIISWDQMRKAFLSQFFPHSKTAQLR 125
K N ++ +L LFPFSL D+A W +L GSI +WD +KAFL++FF +S+TA+LR
Sbjct: 76 TKINGVSEDGFKLRLFPFSLGDKAHLWEKTLPQGSITTWDDCKKAFLAKFFSYSRTARLR 135
>At1g37060 Athila retroelment ORF 1, putative
Length = 1734
Score = 103 bits (258), Expect = 4e-23
Identities = 55/109 (50%), Positives = 72/109 (65%), Gaps = 3/109 (2%)
Query: 20 DAILYPTVEGNNFEIKSALIYLVQENQFFGSPTEDPNLHVSIFLRLSGTLKAN---QEAV 76
+ I+ P V+ NNFEIKS LI +VQ N+F G P EDP H+ F RL K N ++
Sbjct: 27 NGIVPPPVQNNNFEIKSGLIAMVQSNKFHGLPMEDPLDHLDEFDRLCSLTKINRVSEDGF 86
Query: 77 RLHLFPFSLRDRASAWFHSLKIGSIISWDQMRKAFLSQFFPHSKTAQLR 125
+L LFPFSL D+A W SL GSI SW+ +KAFL++FF +S+TA+LR
Sbjct: 87 KLRLFPFSLGDKAHQWEKSLPQGSITSWNDCKKAFLAKFFSNSRTARLR 135
>At4g07640 putative athila transposon protein
Length = 866
Score = 101 bits (252), Expect = 2e-22
Identities = 52/109 (47%), Positives = 71/109 (64%), Gaps = 3/109 (2%)
Query: 20 DAILYPTVEGNNFEIKSALIYLVQENQFFGSPTEDPNLHVSIFLRLSGTLKAN---QEAV 76
+ I P ++ NNFEIKS LI ++Q N+F+G P EDP H+ F RL K N +
Sbjct: 27 EGIAPPAIQNNNFEIKSGLISMIQGNKFYGLPMEDPLDHLDEFDRLCNLTKINGVSADGF 86
Query: 77 RLHLFPFSLRDRASAWFHSLKIGSIISWDQMRKAFLSQFFPHSKTAQLR 125
+L LFPFSL D+A W +L SII+WD +KAFLS+FF +++TA+LR
Sbjct: 87 KLRLFPFSLGDKAHIWEKNLPHDSIITWDDCKKAFLSKFFSNARTARLR 135
>At3g30655 hypothetical protein, 3' partial
Length = 660
Score = 101 bits (252), Expect = 2e-22
Identities = 53/104 (50%), Positives = 69/104 (65%), Gaps = 3/104 (2%)
Query: 25 PTVEGNNFEIKSALIYLVQENQFFGSPTEDPNLHVSIFLRLSGTLKAN---QEAVRLHLF 81
P V+ NNFEIKS LI +VQ N+F G P EDP H+ F RL G K N ++ +L LF
Sbjct: 32 PPVQNNNFEIKSGLIAMVQGNKFHGLPMEDPLDHLDEFERLYGLTKINGVSEDGFKLRLF 91
Query: 82 PFSLRDRASAWFHSLKIGSIISWDQMRKAFLSQFFPHSKTAQLR 125
PFSL D+A W +L SI +WD +KAFL++FF +S+TA+LR
Sbjct: 92 PFSLGDKAHLWEKTLPQNSITAWDDCKKAFLAKFFSNSRTARLR 135
>At2g13260 putative Athila retroelement ORF1 protein
Length = 622
Score = 100 bits (248), Expect = 5e-22
Identities = 55/109 (50%), Positives = 72/109 (65%), Gaps = 3/109 (2%)
Query: 20 DAILYPTVEGNNFEIKSALIYLVQENQFFGSPTEDPNLHVSIFLRLSGTLKAN---QEAV 76
+ I P VE NNFEIKS+LI +VQ ++F G EDP H+ F L T+K N ++A
Sbjct: 45 NGIQAPPVENNNFEIKSSLINMVQTSKFHGLSMEDPLDHLEQFDMLCSTVKINGISEDAF 104
Query: 77 RLHLFPFSLRDRASAWFHSLKIGSIISWDQMRKAFLSQFFPHSKTAQLR 125
+L LFPFSL DRA W +L SI SWDQ ++AFLS+FF ++TA+LR
Sbjct: 105 KLRLFPFSLGDRARIWEKNLPQRSITSWDQCKRAFLSKFFSTTRTARLR 153
>At4g08050
Length = 1428
Score = 99.4 bits (246), Expect = 9e-22
Identities = 54/120 (45%), Positives = 73/120 (60%), Gaps = 8/120 (6%)
Query: 14 SSDEPYD-----AILYPTVEGNNFEIKSALIYLVQENQFFGSPTEDPNLHVSIFLRLSGT 68
+ D P D I P ++ NNFEIKS LI ++Q N+F G P EDP H+ F RL
Sbjct: 16 AGDAPRDHRQRKGIAPPAIQNNNFEIKSGLISMIQGNKFHGLPMEDPLDHLDEFDRLCNL 75
Query: 69 LKAN---QEAVRLHLFPFSLRDRASAWFHSLKIGSIISWDQMRKAFLSQFFPHSKTAQLR 125
K N ++ +L LFPFSL D+A W +L SI +WD +KAFLS+FF +++TA+LR
Sbjct: 76 TKINGVSEDGFKLRLFPFSLGDKAHIWEKNLSHDSITTWDDYKKAFLSKFFSNARTARLR 135
>At2g07480 F9A16.15
Length = 1012
Score = 97.1 bits (240), Expect = 4e-21
Identities = 50/107 (46%), Positives = 71/107 (65%), Gaps = 3/107 (2%)
Query: 22 ILYPTVEGNNFEIKSALIYLVQENQFFGSPTEDPNLHVSIFLRLSGTLKAN---QEAVRL 78
I+ P ++ NNF+IKS LI ++Q N+F G P EDP H+ F RL K N +E+ +L
Sbjct: 24 IVPPPIQNNNFKIKSDLISMIQGNKFHGLPMEDPLDHLDNFDRLCSLTKINGVSEESFKL 83
Query: 79 HLFPFSLRDRASAWFHSLKIGSIISWDQMRKAFLSQFFPHSKTAQLR 125
LFPFSL D+A W +L + SI +WD +KAFL++FF +S+ A+LR
Sbjct: 84 RLFPFSLGDKAHLWEKTLPVKSIDTWDDCKKAFLAKFFSNSRKARLR 130
>At2g06310 putative Athila retroelement ORF1 protein
Length = 733
Score = 96.7 bits (239), Expect = 6e-21
Identities = 51/113 (45%), Positives = 70/113 (61%), Gaps = 3/113 (2%)
Query: 25 PTVEGNNFEIKSALIYLVQENQFFGSPTEDPNLHVSIFLRLSGTLKAN---QEAVRLHLF 81
P ++ NNFEIKS LI ++Q N+F G P EDP H+ F RL K N ++ L LF
Sbjct: 32 PVIQNNNFEIKSGLISMIQGNKFHGLPMEDPLNHLDEFDRLCNLTKINGVIEDGFNLRLF 91
Query: 82 PFSLRDRASAWFHSLKIGSIISWDQMRKAFLSQFFPHSKTAQLRIKSHSSLKK 134
PFSL +A W +L SI +WD +KAFLS+FF +++TA+LR + L+K
Sbjct: 92 PFSLGGKAHIWEKNLPHDSITTWDDCKKAFLSKFFSNARTARLRNEISGFLQK 144
>At2g10670 pseudogene
Length = 929
Score = 94.0 bits (232), Expect = 4e-20
Identities = 50/107 (46%), Positives = 68/107 (62%), Gaps = 3/107 (2%)
Query: 22 ILYPTVEGNNFEIKSALIYLVQENQFFGSPTEDPNLHVSIFLRLSGTLKAN---QEAVRL 78
I+ V+ NNF+IKS LI +VQ N+F G P EDP H+ RL G K N ++ +L
Sbjct: 61 IVLRPVQNNNFKIKSGLIAMVQGNKFHGLPMEDPLDHLDELERLCGLTKINGVSEDGFKL 120
Query: 79 HLFPFSLRDRASAWFHSLKIGSIISWDQMRKAFLSQFFPHSKTAQLR 125
LFPFSL D+A W +L SI +WD + AFL++FF +S+TA+LR
Sbjct: 121 RLFPFSLGDKAHLWEKTLPKNSITTWDDCKMAFLAKFFSNSRTARLR 167
>At2g06160 putative Athila retroelement ORF1 protein
Length = 750
Score = 94.0 bits (232), Expect = 4e-20
Identities = 52/120 (43%), Positives = 72/120 (59%), Gaps = 8/120 (6%)
Query: 14 SSDEPYD-----AILYPTVEGNNFEIKSALIYLVQENQFFGSPTEDPNLHVSIFLRLSGT 68
+SD P++ I+ P V+ NNFEIKS LI +VQ N+F G P ED H+ F RL
Sbjct: 16 ASDFPHNHNQRHGIVLPLVQNNNFEIKSGLIAMVQGNKFHGLPMEDSLDHLDEFERLCDL 75
Query: 69 LKAN---QEAVRLHLFPFSLRDRASAWFHSLKIGSIISWDQMRKAFLSQFFPHSKTAQLR 125
K N ++ + LFPFSL D+ W +L SI +WD +KAF ++FF +S+TA+LR
Sbjct: 76 TKINGVSEDGFKFRLFPFSLGDKTHLWEKTLPQNSITTWDDCKKAFFAKFFSNSRTARLR 135
>At4g07780 putative athila transposon protein
Length = 446
Score = 92.0 bits (227), Expect = 1e-19
Identities = 50/107 (46%), Positives = 69/107 (63%), Gaps = 3/107 (2%)
Query: 22 ILYPTVEGNNFEIKSALIYLVQENQFFGSPTEDPNLHVSIFLRLSGTLKAN---QEAVRL 78
I+ P V+ NNFEI S LI ++Q N+F G P EDP ++ F RL G K N ++ +L
Sbjct: 37 IVPPPVQINNFEIMSGLISMIQGNKFHGLPKEDPLDNLDSFDRLCGLTKINGVTKDMFKL 96
Query: 79 HLFPFSLRDRASAWFHSLKIGSIISWDQMRKAFLSQFFPHSKTAQLR 125
LFPFSL D+A W +L SI SWD +K FL++FF +++TA+LR
Sbjct: 97 RLFPFSLGDKAHHWKKTLPPDSITSWDDCKKDFLAKFFSNARTARLR 143
>At3g32000 unknown protein
Length = 839
Score = 90.5 bits (223), Expect = 4e-19
Identities = 49/104 (47%), Positives = 65/104 (62%), Gaps = 3/104 (2%)
Query: 25 PTVEGNNFEIKSALIYLVQENQFFGSPTEDPNLHVSIFLRLSGTLKAN---QEAVRLHLF 81
P ++ NNFEIKS LI ++Q N+F G P EDP H+ F RL K N + +L LF
Sbjct: 32 PAIQKNNFEIKSGLISMIQGNKFHGLPMEDPLDHLDEFDRLCNLTKINGVSENGFKLRLF 91
Query: 82 PFSLRDRASAWFHSLKIGSIISWDQMRKAFLSQFFPHSKTAQLR 125
PFSL D+A W +L SI + D +KAFLS+FF + +TA+LR
Sbjct: 92 PFSLGDKALIWEMNLPHDSITTRDDCKKAFLSKFFSNDRTARLR 135
>At3g30630 hypothetical protein
Length = 785
Score = 89.4 bits (220), Expect = 9e-19
Identities = 50/119 (42%), Positives = 71/119 (59%), Gaps = 8/119 (6%)
Query: 14 SSDEPYD-----AILYPTVEGNNFEIKSALIYLVQENQFFGSPTEDPNLHVSIFLRLSGT 68
+ D P D I PT++ NNF+IKS LI ++Q N+F G P ED H+ F RL
Sbjct: 16 AGDAPRDHRQRKGIAPPTIQNNNFKIKSGLISMIQGNKFHGLPMEDLLDHLDEFDRLCNL 75
Query: 69 LKAN---QEAVRLHLFPFSLRDRASAWFHSLKIGSIISWDQMRKAFLSQFFPHSKTAQL 124
K N ++ +L LFPF L D+A W ++ SII+W +KAFL++FF ++KTA+L
Sbjct: 76 TKVNGVSEDGFKLRLFPFFLGDKAHIWEKNMPHDSIITWVDCKKAFLAKFFSNAKTARL 134
>At1g38440 hypothetical protein
Length = 263
Score = 80.1 bits (196), Expect = 6e-16
Identities = 41/88 (46%), Positives = 57/88 (64%), Gaps = 3/88 (3%)
Query: 41 LVQENQFFGSPTEDPNLHVSIFLRLSGTLKAN---QEAVRLHLFPFSLRDRASAWFHSLK 97
++QEN+F G P EDP H+ F RL K N ++ +L LFPFSL D+A W +L
Sbjct: 1 MIQENKFHGLPMEDPLDHLDEFDRLYNLTKINGVSEDGFKLRLFPFSLGDKAHIWEKNLP 60
Query: 98 IGSIISWDQMRKAFLSQFFPHSKTAQLR 125
SI +WD +KAFLS+FF +++TA+LR
Sbjct: 61 HDSITTWDDCKKAFLSKFFSNARTARLR 88
>At3g32890 Athila ORF 1, putative
Length = 755
Score = 77.4 bits (189), Expect = 4e-15
Identities = 40/88 (45%), Positives = 56/88 (63%), Gaps = 3/88 (3%)
Query: 41 LVQENQFFGSPTEDPNLHVSIFLRLSGTLKAN---QEAVRLHLFPFSLRDRASAWFHSLK 97
++Q N+F G P EDP H+ F RL K N ++ +L LFPFSL D+A W +L
Sbjct: 1 MIQGNKFHGLPMEDPLDHLDEFDRLYNLTKINGVSEDGFKLRLFPFSLGDKAHIWEKNLP 60
Query: 98 IGSIISWDQMRKAFLSQFFPHSKTAQLR 125
SI +WD +KAFLS+FF +++TA+LR
Sbjct: 61 HDSITTWDDCKKAFLSKFFSNARTARLR 88
>At4g03790 putative athila-like protein
Length = 1064
Score = 77.0 bits (188), Expect = 5e-15
Identities = 45/112 (40%), Positives = 59/112 (52%), Gaps = 8/112 (7%)
Query: 14 SSDEPYD-----AILYPTVEGNNFEIKSALIYLVQENQFFGSPTEDPNLHVSIFLRLSGT 68
+ D P D I P ++ NNFEIKS LI ++Q N+F G P EDP H+ F RL
Sbjct: 16 AGDAPRDHRQRKGIAPPAIQNNNFEIKSGLISIIQGNKFHGLPMEDPLDHLDEFDRLCNL 75
Query: 69 LKAN---QEAVRLHLFPFSLRDRASAWFHSLKIGSIISWDQMRKAFLSQFFP 117
K N ++ +L LFPFSL D+A W +L SI +W R+ F P
Sbjct: 76 TKINGVSEDGFKLRLFPFSLGDKAHIWEKNLSHDSITTWMIARRLFYQSSSP 127
>At3g42260 putative protein
Length = 355
Score = 73.9 bits (180), Expect = 4e-14
Identities = 40/94 (42%), Positives = 55/94 (57%), Gaps = 3/94 (3%)
Query: 35 KSALIYLVQENQFFGSPTEDPNLHVSIFLRLSGTLKAN---QEAVRLHLFPFSLRDRASA 91
K LI +Q N+F G P EDP H+ F RL G K N ++ +L LFPFSL D+A
Sbjct: 222 KGGLISTIQGNKFHGLPMEDPLDHLDSFDRLCGFTKINGVTEDMFKLRLFPFSLGDKAHH 281
Query: 92 WFHSLKIGSIISWDQMRKAFLSQFFPHSKTAQLR 125
W +L SI SW +K FL++FF +++T + R
Sbjct: 282 WEKTLPPKSINSWGDCKKTFLAKFFSNARTTRFR 315
>At2g10740 pseudogene
Length = 169
Score = 73.2 bits (178), Expect = 7e-14
Identities = 39/87 (44%), Positives = 52/87 (58%), Gaps = 3/87 (3%)
Query: 22 ILYPTVEGNNFEIKSALIYLVQENQFFGSPTEDPNLHVSIFLRLSGTLKAN---QEAVRL 78
I+ P V+ NNFEIKS LI ++Q N+F G P +DP H+ F RL G N ++ +
Sbjct: 81 IVPPPVQNNNFEIKSGLISMIQGNKFHGLPMKDPLDHLDSFDRLCGLTNINGVTEDMFKQ 140
Query: 79 HLFPFSLRDRASAWFHSLKIGSIISWD 105
LFPFS+ D+A W +L SI SWD
Sbjct: 141 RLFPFSVGDKAHHWEKTLPSDSITSWD 167
>At3g31340 Athila ORF 1, putative
Length = 781
Score = 70.5 bits (171), Expect = 4e-13
Identities = 40/107 (37%), Positives = 60/107 (55%), Gaps = 3/107 (2%)
Query: 27 VEGNNFEIKSALIYLVQENQFFGSPTEDPNLHVSIFLRLSGTLKAN---QEAVRLHLFPF 83
+ N+FEIK+ L+ LV++NQFF +E+ H+ F + + N + ++ LF F
Sbjct: 82 INRNDFEIKTGLLALVKQNQFFVHSSENHVYHLDNFEDICRITRMNGVPDDIIKCRLFIF 141
Query: 84 SLRDRASAWFHSLKIGSIISWDQMRKAFLSQFFPHSKTAQLRIKSHS 130
SL D A W SL ++ SW+ + AFL Q+F S+TA LR K S
Sbjct: 142 SLADNAHRWLKSLDPINLRSWEDYKAAFLGQYFTQSRTAILRNKISS 188
>At1g36130 hypothetical protein
Length = 914
Score = 70.1 bits (170), Expect = 6e-13
Identities = 38/110 (34%), Positives = 63/110 (56%), Gaps = 3/110 (2%)
Query: 21 AILYPTVEGNNFEIKSALIYLVQENQFFGSPTEDPNLHVSIFLRLSGTLKAN---QEAVR 77
AI+ P ++ N++E+K LV ++ F G E P H+ F L ++KAN ++ +
Sbjct: 90 AIVPPPLQRNDYELKPGYFALVGQHPFHGLSHEQPMDHIERFEDLVLSIKANGVSEDYLL 149
Query: 78 LHLFPFSLRDRASAWFHSLKIGSIISWDQMRKAFLSQFFPHSKTAQLRIK 127
LFP+SL A +W LK GS+ +W ++ AFL+ F+ +K+ +LR K
Sbjct: 150 CKLFPYSLAGEADSWLKQLKAGSLKTWRSIKIAFLNNFYDDAKSEELRNK 199
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.326 0.138 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,590,156
Number of Sequences: 26719
Number of extensions: 132476
Number of successful extensions: 481
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 405
Number of HSP's gapped (non-prelim): 57
length of query: 175
length of database: 11,318,596
effective HSP length: 93
effective length of query: 82
effective length of database: 8,833,729
effective search space: 724365778
effective search space used: 724365778
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (26.2 bits)
Medicago: description of AC121241.11