BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC121234.2 + phase: 0 
         (1118 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At3g54440 beta Galactosidase - like protein                          1573  0.0
At1g09010 putative Bos beta-mannosidase                                36  0.14
At5g57610 putative protein                                             30  5.9
At5g38990 protein kinase - like protein                                30  5.9

>At3g54440 beta Galactosidase - like protein
          Length = 1075

 Score = 1573 bits (4072), Expect = 0.0
 Identities = 732/1109 (66%), Positives = 871/1109 (78%), Gaps = 39/1109 (3%)

Query: 8    SLVGPLLLAPNNGYKVWEDPSFIKWRKRDPHVHLHCHESVEGSLKYWYQRSKVDYLVSQS 67
            SL   ++L   NGY+VWED +  KWRKRDPHV L CHESV+G+L+YWYQR+ VD  VS+S
Sbjct: 3    SLATQMILPSENGYRVWEDQTLFKWRKRDPHVTLRCHESVQGALRYWYQRNNVDLTVSKS 62

Query: 68   AVWKDDAVNGALESAAFWVKDLPFVKSLSGYWKFFLASNPCNVPAKFHDSEFQDSEWSTL 127
            AVW DDAV  AL+SAAFWV  LPFVKSLSGYWKFFLA  P NVP KF+D+ F DS+W+ L
Sbjct: 63   AVWNDDAVQAALDSAAFWVDGLPFVKSLSGYWKFFLAPKPANVPDKFYDAAFSDSDWNAL 122

Query: 128  PVPSNWQLHGFDRPIYTNVTYPFPLDPPFVPTENPTGCYRMDFHLPKEWEGRRILLHFEA 187
             VPSNWQ HGFDRPIYTNV YPFP DPP+VP +NPTGCYR  F +PKEW+ RRILLHFEA
Sbjct: 123  QVPSNWQCHGFDRPIYTNVVYPFPNDPPYVPEDNPTGCYRTYFQIPKEWKDRRILLHFEA 182

Query: 188  VDSAFCAWINGHPIGYSQDSRLPAEFEVTDFCHPCGSDLKNVLAVQVFRWSDGCYLEDQD 247
            VDSAF AWING+P+GY                                RWSDG YLEDQD
Sbjct: 183  VDSAFFAWINGNPVGY--------------------------------RWSDGSYLEDQD 210

Query: 248  HWRMSGIHRDVLLLAKPEVFITDYFFKSNLAEDFSSAEMLVEVKIDRLQDTSIDNVLTNY 307
            HW +SGIHRDVLLLAKP+VFI DYFFKS LA+DFS A++ VEVKID +Q++S D VL+N+
Sbjct: 211  HWWLSGIHRDVLLLAKPKVFIADYFFKSKLADDFSYADIQVEVKIDNMQESSKDLVLSNF 270

Query: 308  TIEATLYDSGSWESSDGNPDLLSSNVADITFQPTTTP-LGFYGYTLVGKLQSPKLWSAEQ 366
             IEA ++D+ +W +S+G    LS  VA++   P+ +P LGF+GY L GKL SP LWSAEQ
Sbjct: 271  IIEAAIFDTKNWYNSEGFSCELSPKVANLKLNPSPSPTLGFHGYLLEGKLDSPNLWSAEQ 330

Query: 367  PYLYTLVVVLKDKSGRVLDCESSQVGFKNVSKAHKQLLVNGHPVVIRGVNRHEHHPEVGK 426
            P +Y LV+ LKD SG+VLD ESS VG + VSKA KQLLVNGHPVVI+GVNRHEHHP VGK
Sbjct: 331  PNVYILVLTLKDTSGKVLDSESSIVGIRQVSKAFKQLLVNGHPVVIKGVNRHEHHPRVGK 390

Query: 427  ANIESCMVKDLVLMKQNNINAVRNSHYPQHPRWYELCDLFGMYMIDEANIETHGFDYSKH 486
             NIE+CMVKDL++MK+ NINAVRNSHYPQHPRWYELCDLFGMYMIDEANIETHGFD S H
Sbjct: 391  TNIEACMVKDLIMMKEYNINAVRNSHYPQHPRWYELCDLFGMYMIDEANIETHGFDLSGH 450

Query: 487  LKHPTLEPMWATAMLDRVIGMVERDKNHTCIISWSLGNESGFGTNHFAMAGWIRGRDSSR 546
            LKHP  EP WA AMLDRV+GMVERDKNHTCIISWSLGNE+G+G NH AMAGWIR +D SR
Sbjct: 451  LKHPAKEPSWAAAMLDRVVGMVERDKNHTCIISWSLGNEAGYGPNHSAMAGWIREKDPSR 510

Query: 547  VIHYEGGGSRTPCTDIVCPMYMRVWDMLKIANDPTETRPLILCEYSHAMGNSNGNLHIYW 606
            ++HYEGGGSRT  TDIVCPMYMRVWD++KIA D  E+RPLILCEY HAMGNSNGN+  YW
Sbjct: 511  LVHYEGGGSRTSSTDIVCPMYMRVWDIIKIALDQNESRPLILCEYQHAMGNSNGNIDEYW 570

Query: 607  EAIDNTFGLQGGFIWDWVDQALRKVQADGTKQWAYGGEFGDIPNDLNFCLNGLVWPDRTA 666
            EAIDNTFGLQGGFIWDWVDQ L K+ +DG K+WAYGG+FGD PNDLNFCLNGL+WPDRT 
Sbjct: 571  EAIDNTFGLQGGFIWDWVDQGLLKLGSDGIKRWAYGGDFGDQPNDLNFCLNGLIWPDRTP 630

Query: 667  HPVLHEVKFLYQPIKVNLSDGKLEIKNTHFFQTTEGLEFSWYISADGYKLGSDKLSLPPI 726
            HP LHEVK  YQPIKV+L+DG +++ NT+FF TTE LEFSW I  DG +LGS  LS+P I
Sbjct: 631  HPALHEVKHCYQPIKVSLTDGMIKVANTYFFNTTEELEFSWTIHGDGLELGSGTLSIPVI 690

Query: 727  KPQSNYVFDWKSGPWYSLWDSSSSEEIFLTITAKLLNSTRWVEAGHVVTTAQVQLPAKRD 786
            KPQ+++  +WKSGPW+S W+ S++ E+FLTI AKLLN TR +EAGH++++ Q+ LPAK  
Sbjct: 691  KPQNSFEMEWKSGPWFSFWNDSNAGELFLTINAKLLNLTRSLEAGHLLSSTQIPLPAKGQ 750

Query: 787  IVPHAINIGSGNLVVETLGDTIKVSQQDVWDITFNTKTGLIESWKVKGVHVMNKGIHPCF 846
            I+P AI     ++  ET+GD IK+SQ+D W++  N + G IE WK++GV +MN+ I PCF
Sbjct: 751  IIPQAIKKTDTSITCETVGDFIKISQKDSWELMVNVRKGTIEGWKIQGVLLMNEAILPCF 810

Query: 847  WRASIDNDKGGGADSYLSRWKAAGIDSVHFIAESCSVQSTTGNAVKLLVVFHGVTKGEEG 906
            WRA  DNDKGGG  SY SRWKAA +D+V F+ ESCSV+S T  +V++  ++ G       
Sbjct: 811  WRAPTDNDKGGGDSSYFSRWKAAQLDNVEFLVESCSVKSITDKSVEIEFIYLG------S 864

Query: 907  SLPNQDKSKVLFTTEMTYTIYASGDVILECNVKPNADLPPLPRVGIEMNLEKSLDQVSWY 966
            S     KS  LF   +TY IY SGD+I    V+PN+DLPPLPRVGIE ++EK+LD+V WY
Sbjct: 865  SASGSSKSDALFKVNVTYLIYGSGDIITNWFVEPNSDLPPLPRVGIEFHIEKTLDRVEWY 924

Query: 967  GRGPFECYPDRKAAAQVAVYEKSVDELHVPYIVPGESGGRADVRWATFLNKNGFGIYTSK 1026
            G+GPFECYPDRKAAA VA+YE +V ++HVPYIVPGE+GGR DVRW TF NK+G GIY S 
Sbjct: 925  GKGPFECYPDRKAAAHVAIYEHNVGDMHVPYIVPGENGGRTDVRWVTFRNKDGVGIYAST 984

Query: 1027 YGSSPPMQMSASYYSTSELDRAGHDYELVKGDNIEVHLDHKHMGLGGDDSWSPCVHDQYL 1086
            YGSS  MQM+ASYY+T EL RA H+ +L+KG NIEVHLDHKHMGLGGDDSW+PCVHD++L
Sbjct: 985  YGSSSLMQMNASYYTTGELHRATHEEDLIKGQNIEVHLDHKHMGLGGDDSWTPCVHDKFL 1044

Query: 1087 VPPVPYSFSVRLSPVTPATSGHDIYRSQL 1115
            +PP  YSFS+RL P+T +TSG +IY+ QL
Sbjct: 1045 IPPAQYSFSLRLCPITASTSGLNIYKDQL 1073


>At1g09010 putative Bos beta-mannosidase
          Length = 908

 Score = 35.8 bits (81), Expect = 0.14
 Identities = 75/357 (21%), Positives = 128/357 (35%), Gaps = 46/357 (12%)

Query: 183 LHFEAVDSAFCAWINGHPIGYSQDSRLPAEFEVTDFCHPCGSDLKNVLAVQVFRWSDGCY 242
           L+F A++ +   ++NGH     +        +VTD  HP      N+LA+ V        
Sbjct: 104 LNFRAINYSAQVFVNGHKTELPKGMFRRHTLDVTDILHP----ESNLLALIVHPPDHPGT 159

Query: 243 LEDQDHWRMSGIHRDVLLLAKPEVFITDYFFKSNLAEDFSSAEMLVEVKIDRLQDTSIDN 302
           +  +      G H  V ++        D    S   +D+  A + V  +++  + T    
Sbjct: 160 IPPEGG--QGGDHEPVRII--------DPHLVSTFFDDYKRAYLHVTAELEN-KSTWNTE 208

Query: 303 VLTNYTIEATLYDSGSWESSDGNPDLLSSNVADITFQPTTTPLGFYGYTLVGKLQSPKLW 362
              N  I A L +           ++L    A    Q T  PL FY          P+LW
Sbjct: 209 CSVNIQITAELENGVCLVEHLQTENVLIP--AQGRIQHTFKPLYFY---------KPELW 257

Query: 363 ----SAEQPYLYTLVVVLKDKSGRVLDCESSQVGFKNVSKAHKQLL------VNGHPVVI 412
                 +Q     L+ V+ ++ G   D      GF+ +      +       +NG P+ I
Sbjct: 258 WPNGMGKQNLYDILITVVVNEFGES-DSWMQPFGFRKIESVIDSVTGGRLFKINGEPIFI 316

Query: 413 RGVN--RHEHHPEVGKANIESCMVKDLVLMKQNNINAVR--NSHYPQHPRWYELCDLFGM 468
           RG N    +    + K    +    D+      N+N +R       + P +Y  CD++G+
Sbjct: 317 RGGNWILSDGLLRLSKERYRT----DIKFHADMNMNMIRCWGGGLAERPEFYHFCDIYGL 372

Query: 469 YMIDEANIETHGFDYSKHLKHPTLEPMWATAMLDRVIGMVERDKNHTCIISWSLGNE 525
            +  E  I          + +P   P+     L      V+  +NH  +  W  GNE
Sbjct: 373 LVWQEFWITGDVDGRGVPVSNPN-GPLDHELFLLCARDTVKLLRNHPSLALWVGGNE 428


>At5g57610 putative protein
          Length = 1054

 Score = 30.4 bits (67), Expect = 5.9
 Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 9/44 (20%)

Query: 129 VPSNWQLHGFD------RPIYTNVTYP---FPLDPPFVPTENPT 163
           V S  ++ GFD      +P Y N       FPLDP +VP+ENPT
Sbjct: 555 VGSPQRISGFDGMSSLGQPSYPNPHLQDRAFPLDPNWVPSENPT 598


>At5g38990 protein kinase - like protein
          Length = 880

 Score = 30.4 bits (67), Expect = 5.9
 Identities = 19/81 (23%), Positives = 37/81 (45%), Gaps = 9/81 (11%)

Query: 267 FITDYFFKSNLAEDFSSAEMLVEVKIDRLQDTSIDNVLTNYTIEATLYDSGSWESSDGNP 326
           F+  YF+ +    DF + +    V ++R        +L N++++A++ +S S       P
Sbjct: 103 FLRLYFYPTRYGSDFDAVKSFFSVNVNRF------TLLHNFSVKASIPESSSLIKEFIVP 156

Query: 327 DLLSSNVADITFQPTTTPLGF 347
               +   D+TF P+   L F
Sbjct: 157 ---VNQTLDLTFTPSPNSLAF 174


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.318    0.136    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,468,358
Number of Sequences: 26719
Number of extensions: 1320410
Number of successful extensions: 2533
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2527
Number of HSP's gapped (non-prelim): 6
length of query: 1118
length of database: 11,318,596
effective HSP length: 110
effective length of query: 1008
effective length of database: 8,379,506
effective search space: 8446542048
effective search space used: 8446542048
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 66 (30.0 bits)