BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC121234.11 - phase: 0 /pseudo
         (92 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At3g27890 NADPH:quinone oxidoreductase (NQR)                          128  4e-31
At2g17050 putative disease resistance protein                          27  1.8
At4g33010 P-Protein - like protein                                     26  3.0
At2g26080 putative glycine dehydrogenase                               26  3.0
At3g45380 putative protein                                             26  3.9
At2g43900 putative inositol polyphosphate 5'-phosphatase               25  5.1
At2g29680 cell division control protein 6 (cdc6)                       25  5.1
At3g12700 unknown protein                                              25  6.7
At4g20750 unknown protein                                              25  8.7
At3g05790 putative mitochondrial LON ATP-dependent protease            25  8.7
At2g14400 putative retroelement pol polyprotein                        25  8.7

>At3g27890 NADPH:quinone oxidoreductase (NQR)
          Length = 196

 Score =  128 bits (322), Expect = 4e-31
 Identities = 60/87 (68%), Positives = 78/87 (88%)

Query: 5  VIKVAALSGSIRKVSYHSGLIRAAIELSKGATEGIEIEFIDISTLPMYNTDLENEGTYPP 64
          +I+VAALSGS+RK S+H+GL+RAAI+L+K +  G++IE+IDIS LP+ NTDLE  GTYPP
Sbjct: 10 LIRVAALSGSLRKTSFHTGLLRAAIDLTKESVPGLQIEYIDISPLPLINTDLEVNGTYPP 69

Query: 65 LVEAFRHKILQADSVLFASPEYNYSVT 91
          +VEAFR KIL+ADS+LFASPEYN+SV+
Sbjct: 70 VVEAFRQKILEADSILFASPEYNFSVS 96


>At2g17050 putative disease resistance protein
          Length = 957

 Score = 26.9 bits (58), Expect = 1.8
 Identities = 11/21 (52%), Positives = 15/21 (71%)

Query: 32  SKGATEGIEIEFIDISTLPMY 52
           SKG TE IE+ F+D+S L  +
Sbjct: 355 SKGTTEDIEVIFLDMSNLKFF 375


>At4g33010 P-Protein - like protein
          Length = 1037

 Score = 26.2 bits (56), Expect = 3.0
 Identities = 17/55 (30%), Positives = 26/55 (46%), Gaps = 3/55 (5%)

Query: 30  ELSKGATEGI---EIEFIDISTLPMYNTDLENEGTYPPLVEAFRHKILQADSVLF 81
           E+S+G  E +   +    D++ LPM N  L +EGT      A  + IL+     F
Sbjct: 185 EISQGRLESLLNFQTVITDLTGLPMSNASLLDEGTAAAEAMAMCNNILKGKKKTF 239


>At2g26080 putative glycine dehydrogenase
          Length = 1044

 Score = 26.2 bits (56), Expect = 3.0
 Identities = 17/55 (30%), Positives = 26/55 (46%), Gaps = 3/55 (5%)

Query: 30  ELSKGATEGI---EIEFIDISTLPMYNTDLENEGTYPPLVEAFRHKILQADSVLF 81
           E+S+G  E +   +    D++ LPM N  L +EGT      A  + IL+     F
Sbjct: 191 EISQGRLESLLNYQTVITDLTGLPMSNASLLDEGTAAAEAMAMCNNILKGKKKTF 245


>At3g45380 putative protein
          Length = 690

 Score = 25.8 bits (55), Expect = 3.9
 Identities = 18/78 (23%), Positives = 37/78 (47%), Gaps = 7/78 (8%)

Query: 15  IRKVSYHSGLIRAAIELSKGATEGIE-----IEFIDI--STLPMYNTDLENEGTYPPLVE 67
           + ++      + +   L++  T+G +     I+ ID+   ++ ++  DL+         E
Sbjct: 524 VHEIENEIQFVASITSLTQMMTKGFDETKDKIDAIDVRVQSIKLFVADLKEREHGKQTEE 583

Query: 68  AFRHKILQADSVLFASPE 85
           A +H   + D VLFASP+
Sbjct: 584 ASQHGHARDDDVLFASPD 601


>At2g43900 putative inositol polyphosphate 5'-phosphatase
          Length = 1305

 Score = 25.4 bits (54), Expect = 5.1
 Identities = 16/36 (44%), Positives = 21/36 (57%), Gaps = 1/36 (2%)

Query: 4   AVIKVAALSGSIRKVSYHSGLIRAAIELSKGATEGI 39
           AVIK+AA  G I  ++ H G IR    +S G  +GI
Sbjct: 524 AVIKMAAADGYIFSLATHGG-IRGWPVISPGPLDGI 558


>At2g29680 cell division control protein 6 (cdc6)
          Length = 539

 Score = 25.4 bits (54), Expect = 5.1
 Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 7/75 (9%)

Query: 10  ALSGSIRKVSYHSGLIRAAIELSKGATEGIEIEFIDISTLPMYNTDLENEGTYPPLVEAF 69
           AL    RKVS  SG +R A+ + + A E +EIE          + D E +G  P      
Sbjct: 366 ALEICARKVSAASGDMRKALCVCRSALEILEIEV-------RGSIDQEPKGPVPECQVVK 418

Query: 70  RHKILQADSVLFASP 84
              ++ A S  F SP
Sbjct: 419 MDHMIAALSKTFKSP 433


>At3g12700 unknown protein
          Length = 439

 Score = 25.0 bits (53), Expect = 6.7
 Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 7/50 (14%)

Query: 22  SGLIRAAIELSKGATEGIEIEF-------IDISTLPMYNTDLENEGTYPP 64
           +GL R  +EL +   EG+ IE+        ++S LP     L+    + P
Sbjct: 334 TGLARYLVELKRVKPEGVPIEYCFSFTSGFNVSKLPQLTFHLKGGARFEP 383


>At4g20750 unknown protein
          Length = 105

 Score = 24.6 bits (52), Expect = 8.7
 Identities = 13/44 (29%), Positives = 22/44 (49%)

Query: 1  MATAVIKVAALSGSIRKVSYHSGLIRAAIELSKGATEGIEIEFI 44
          MA A +K   +SG     S      +  + + +GA+ GI +EF+
Sbjct: 1  MAVAALKRMRVSGLATSSSSSVPNWKGGVSMVQGASRGIGLEFV 44


>At3g05790 putative mitochondrial LON ATP-dependent protease
          Length = 942

 Score = 24.6 bits (52), Expect = 8.7
 Identities = 10/38 (26%), Positives = 20/38 (52%)

Query: 8   VAALSGSIRKVSYHSGLIRAAIELSKGATEGIEIEFID 45
           +AA    ++ + +     R   EL++   EG+E+ F+D
Sbjct: 891 IAARRSQVKVIIFPEANRRDFDELARNVKEGLEVHFVD 928


>At2g14400 putative retroelement pol polyprotein
          Length = 1466

 Score = 24.6 bits (52), Expect = 8.7
 Identities = 11/35 (31%), Positives = 18/35 (51%)

Query: 13  GSIRKVSYHSGLIRAAIELSKGATEGIEIEFIDIS 47
           GSIR+V Y   L    +   K   + + I+F D++
Sbjct: 491 GSIREVQYPDWLANTVVVKKKNGKDRVCIDFTDLN 525


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.316    0.133    0.358 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,796,681
Number of Sequences: 26719
Number of extensions: 61297
Number of successful extensions: 129
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 123
Number of HSP's gapped (non-prelim): 11
length of query: 92
length of database: 11,318,596
effective HSP length: 68
effective length of query: 24
effective length of database: 9,501,704
effective search space: 228040896
effective search space used: 228040896
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)