BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC119408.1 + phase: 0 /pseudo
(600 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g31420 hypothetical protein 119 6e-27
At1g47910 reverse transcriptase, putative 119 6e-27
At2g01840 putative non-LTR retroelement reverse transcriptase 115 5e-26
At2g45230 putative non-LTR retroelement reverse transcriptase 111 1e-24
At4g10830 putative protein 110 2e-24
At3g45550 putative protein 109 4e-24
At2g15540 putative non-LTR retroelement reverse transcriptase 109 4e-24
At2g31520 putative non-LTR retroelement reverse transcriptase 109 5e-24
At2g25550 putative non-LTR retroelement reverse transcriptase 109 5e-24
At2g17910 putative non-LTR retroelement reverse transcriptase 108 8e-24
At2g05200 putative non-LTR retroelement reverse transcriptase 105 6e-23
At2g41580 putative non-LTR retroelement reverse transcriptase 103 2e-22
At4g09710 RNA-directed DNA polymerase -like protein 103 3e-22
At3g32110 non-LTR reverse transcriptase, putative 103 3e-22
At1g24640 hypothetical protein 102 5e-22
At2g16680 putative non-LTR retroelement reverse transcriptase 102 6e-22
At4g15590 reverse transcriptase like protein 101 1e-21
At2g11240 pseudogene 99 7e-21
At2g07730 putative non-LTR retroelement reverse transcriptase 97 2e-20
At2g31080 putative non-LTR retroelement reverse transcriptase 95 1e-19
>At3g31420 hypothetical protein
Length = 1491
Score = 119 bits (297), Expect = 6e-27
Identities = 55/125 (44%), Positives = 80/125 (64%), Gaps = 1/125 (0%)
Query: 2 IANRIKYILPNITNDFQSTFVPGRLITDNSLIVFETFHYIRKTRTNNNGYVGIKLDIAKA 61
+ NR+K L + Q+ FVPGRLIT+N++I E ++ ++ + N Y+ +K DI KA
Sbjct: 706 LVNRLKKHLGGAITENQAAFVPGRLITNNAIIAHEVYYALKARKRQANSYMALKTDITKA 765
Query: 62 YDSLKWNFIEDTLTAMGFPINLINTIMLCIRCVTFSILINGQPTEPFSPQRGIRQGDPF- 120
YD L+W+F+E+T+ MGF I IM+C+ V FS+LING P P+RGIR GDP
Sbjct: 766 YDRLEWDFLEETMRQMGFNTKWIERIMICVTMVRFSVLINGSPHGTIKPERGIRHGDPLS 825
Query: 121 PLIFL 125
P +F+
Sbjct: 826 PYLFI 830
>At1g47910 reverse transcriptase, putative
Length = 1142
Score = 119 bits (297), Expect = 6e-27
Identities = 59/125 (47%), Positives = 82/125 (65%), Gaps = 1/125 (0%)
Query: 2 IANRIKYILPNITNDFQSTFVPGRLITDNSLIVFETFHYIRKTRTNNNGYVGIKLDIAKA 61
+ R+K +LPN+ ++ QS FV GRLI+DN LI E FH +R + + ++ IK D++KA
Sbjct: 305 LCQRLKTVLPNLISETQSAFVDGRLISDNILIAQEMFHGLRTNSSCKDKFMAIKTDMSKA 364
Query: 62 YDSLKWNFIEDTLTAMGFPINLINTIMLCIRCVTFSILINGQPTEPFSPQRGIRQGDPF- 120
YD ++WNFIE L MGF I+ IM CI V + +LINGQP P+RG+RQGDP
Sbjct: 365 YDQVEWNFIEALLRKMGFCEKWISWIMWCITTVQYKVLINGQPKGLIIPERGLRQGDPLS 424
Query: 121 PLIFL 125
P +F+
Sbjct: 425 PYLFI 429
>At2g01840 putative non-LTR retroelement reverse transcriptase
Length = 1715
Score = 115 bits (289), Expect = 5e-26
Identities = 53/126 (42%), Positives = 79/126 (62%), Gaps = 1/126 (0%)
Query: 2 IANRIKYILPNITNDFQSTFVPGRLITDNSLIVFETFHYIRKTRTNNNGYVGIKLDIAKA 61
+ R+K L ++ +D Q+ FVPG+ I+DN L+ E H ++ R +GYV +K DI+KA
Sbjct: 883 LIKRLKQCLGDVISDSQAAFVPGQNISDNVLVAHELLHSLKSRRECQSGYVAVKTDISKA 942
Query: 62 YDSLKWNFIEDTLTAMGFPINLINTIMLCIRCVTFSILINGQPTEPFSPQRGIRQGDPF- 120
YD ++WNF+E + +GF + IM C+ V++ +LING P P RGIRQGDP
Sbjct: 943 YDRVEWNFLEKVMIQLGFAPRWVKWIMTCVTSVSYEVLINGSPYGKIFPSRGIRQGDPLS 1002
Query: 121 PLIFLY 126
P +FL+
Sbjct: 1003 PYLFLF 1008
>At2g45230 putative non-LTR retroelement reverse transcriptase
Length = 1374
Score = 111 bits (278), Expect = 1e-24
Identities = 53/125 (42%), Positives = 79/125 (62%), Gaps = 1/125 (0%)
Query: 2 IANRIKYILPNITNDFQSTFVPGRLITDNSLIVFETFHYIRKTRTNNNGYVGIKLDIAKA 61
+ANR+K ILP++ ++ Q+ FV GRLI+DN LI E H + + ++ IK DI+KA
Sbjct: 521 MANRLKKILPSLISETQAAFVKGRLISDNILIAHELLHALSSNNKCSEEFIAIKTDISKA 580
Query: 62 YDSLKWNFIEDTLTAMGFPINLINTIMLCIRCVTFSILINGQPTEPFSPQRGIRQGDPF- 120
YD ++W F+E + +GF + I IM C++ V + +LING P P RG+RQGDP
Sbjct: 581 YDRVEWPFLEKAMRGLGFADHWIRLIMECVKSVRYQVLINGTPHGEIIPSRGLRQGDPLS 640
Query: 121 PLIFL 125
P +F+
Sbjct: 641 PYLFV 645
>At4g10830 putative protein
Length = 1294
Score = 110 bits (275), Expect = 2e-24
Identities = 51/125 (40%), Positives = 77/125 (60%), Gaps = 1/125 (0%)
Query: 2 IANRIKYILPNITNDFQSTFVPGRLITDNSLIVFETFHYIRKTRTNNNGYVGIKLDIAKA 61
+ R+K L I +D Q+ F+PGRL+ DN +I E H ++ + + Y+ +K D++KA
Sbjct: 883 LVERLKGHLDAIVSDSQAAFIPGRLVNDNVMIAHEMMHSLKTRKRVSQSYMAVKTDVSKA 942
Query: 62 YDSLKWNFIEDTLTAMGFPINLINTIMLCIRCVTFSILINGQPTEPFSPQRGIRQGDPF- 120
YD ++WNF+E T+ GF I IM ++ V +S+L+NG P PQRGIRQGDP
Sbjct: 943 YDRVEWNFLETTMRLFGFSETWIKWIMGAVKSVNYSVLVNGIPHGTIQPQRGIRQGDPLS 1002
Query: 121 PLIFL 125
P +F+
Sbjct: 1003 PYLFI 1007
>At3g45550 putative protein
Length = 851
Score = 109 bits (273), Expect = 4e-24
Identities = 52/125 (41%), Positives = 79/125 (62%), Gaps = 1/125 (0%)
Query: 2 IANRIKYILPNITNDFQSTFVPGRLITDNSLIVFETFHYIRKTRTNNNGYVGIKLDIAKA 61
+ NR+K L +I +D Q+ F+PGR+I DN +I E H ++ + + Y+ +K D++KA
Sbjct: 142 MVNRLKAHLNSIVSDSQAAFIPGRIINDNVMIAHEIMHSLKVRKRVSKTYMAVKTDVSKA 201
Query: 62 YDSLKWNFIEDTLTAMGFPINLINTIMLCIRCVTFSILINGQPTEPFSPQRGIRQGDPF- 120
YD ++W+F+E T+ GF I IM ++ V +S+LING P SP RGIRQGDP
Sbjct: 202 YDRVEWDFLETTMRLFGFCDKWIGWIMAAVKSVHYSVLINGSPHGYISPTRGIRQGDPLS 261
Query: 121 PLIFL 125
P +F+
Sbjct: 262 PYLFI 266
>At2g15540 putative non-LTR retroelement reverse transcriptase
Length = 1225
Score = 109 bits (273), Expect = 4e-24
Identities = 53/125 (42%), Positives = 78/125 (62%), Gaps = 1/125 (0%)
Query: 2 IANRIKYILPNITNDFQSTFVPGRLITDNSLIVFETFHYIRKTRTNNNGYVGIKLDIAKA 61
+++R+K +LP + ++ QS FV RLITDN LI E FH +R Y+ IK D++KA
Sbjct: 468 LSSRLKRLLPELISETQSAFVAERLITDNILIAQENFHALRTNPACKKKYMAIKTDMSKA 527
Query: 62 YDSLKWNFIEDTLTAMGFPINLINTIMLCIRCVTFSILINGQPTEPFSPQRGIRQGDPF- 120
YD ++W+F+ + MGF ++ I+ CI V++ IL+NG P P RGIRQGDP
Sbjct: 528 YDRVEWSFLRALMLKMGFAQKWVDWIIFCISSVSYKILLNGSPKGFIKPSRGIRQGDPIS 587
Query: 121 PLIFL 125
P +F+
Sbjct: 588 PFLFI 592
>At2g31520 putative non-LTR retroelement reverse transcriptase
Length = 1524
Score = 109 bits (272), Expect = 5e-24
Identities = 51/125 (40%), Positives = 79/125 (62%), Gaps = 1/125 (0%)
Query: 2 IANRIKYILPNITNDFQSTFVPGRLITDNSLIVFETFHYIRKTRTNNNGYVGIKLDIAKA 61
+ NR+K L +I +D Q+ F+PGR+I DN +I E H ++ + + Y+ +K D++KA
Sbjct: 677 LVNRLKSHLNSIVSDSQAAFIPGRIINDNVMIAHEVMHSLKVRKRVSKTYMAVKTDVSKA 736
Query: 62 YDSLKWNFIEDTLTAMGFPINLINTIMLCIRCVTFSILINGQPTEPFSPQRGIRQGDPF- 120
YD ++W+F+E T+ GF I IM ++ V +S+LING P +P RGIRQGDP
Sbjct: 737 YDRVEWDFLETTMRLFGFCNKWIGWIMAAVKSVHYSVLINGSPHGYITPTRGIRQGDPLS 796
Query: 121 PLIFL 125
P +F+
Sbjct: 797 PYLFI 801
>At2g25550 putative non-LTR retroelement reverse transcriptase
Length = 1750
Score = 109 bits (272), Expect = 5e-24
Identities = 51/125 (40%), Positives = 79/125 (62%), Gaps = 1/125 (0%)
Query: 2 IANRIKYILPNITNDFQSTFVPGRLITDNSLIVFETFHYIRKTRTNNNGYVGIKLDIAKA 61
+ NR+K L +I +D Q+ F+PGR+I DN +I E H ++ + + Y+ +K D++KA
Sbjct: 903 LVNRLKSHLNSIVSDSQAAFIPGRIINDNVMIAHEVMHSLKVRKRVSKTYMAVKTDVSKA 962
Query: 62 YDSLKWNFIEDTLTAMGFPINLINTIMLCIRCVTFSILINGQPTEPFSPQRGIRQGDPF- 120
YD ++W+F+E T+ GF I IM ++ V +S+LING P +P RGIRQGDP
Sbjct: 963 YDRVEWDFLETTMRLFGFCNKWIGWIMAAVKSVHYSVLINGSPHGYITPTRGIRQGDPLS 1022
Query: 121 PLIFL 125
P +F+
Sbjct: 1023 PYLFI 1027
>At2g17910 putative non-LTR retroelement reverse transcriptase
Length = 1344
Score = 108 bits (270), Expect = 8e-24
Identities = 55/125 (44%), Positives = 78/125 (62%), Gaps = 1/125 (0%)
Query: 2 IANRIKYILPNITNDFQSTFVPGRLITDNSLIVFETFHYIRKTRTNNNGYVGIKLDIAKA 61
+ R+K LP I + QS FVP RLI+DN L+ E H +R + ++ K D++KA
Sbjct: 499 LTQRLKKHLPAIVSTTQSAFVPQRLISDNILVAHEMIHSLRTNDRISKEHMAFKTDMSKA 558
Query: 62 YDSLKWNFIEDTLTAMGFPINLINTIMLCIRCVTFSILINGQPTEPFSPQRGIRQGDPF- 120
YD ++W F+E +TA+GF I+ IM C+ V++S+LINGQP P RGIRQGDP
Sbjct: 559 YDRVEWPFLETMMTALGFNNKWISWIMNCVTSVSYSVLINGQPYGHIIPTRGIRQGDPLS 618
Query: 121 PLIFL 125
P +F+
Sbjct: 619 PALFV 623
>At2g05200 putative non-LTR retroelement reverse transcriptase
Length = 1229
Score = 105 bits (263), Expect = 6e-23
Identities = 49/125 (39%), Positives = 79/125 (63%), Gaps = 1/125 (0%)
Query: 2 IANRIKYILPNITNDFQSTFVPGRLITDNSLIVFETFHYIRKTRTNNNGYVGIKLDIAKA 61
+ R++ ILP + ++ QS FVPGR+I+DN LI E H++R + + + +K D++KA
Sbjct: 416 MTKRMQLILPKLISENQSAFVPGRVISDNVLITHEVLHFLRTSSAKKHCSMAVKTDMSKA 475
Query: 62 YDSLKWNFIEDTLTAMGFPINLINTIMLCIRCVTFSILINGQPTEPFSPQRGIRQGDPF- 120
YD ++W+F++ L GF I+ ++ C+ V++S LING P P RG+RQGDP
Sbjct: 476 YDRVEWDFLKKVLQRFGFHSIWIDWVLECVTSVSYSFLINGTPQGKVVPTRGLRQGDPLS 535
Query: 121 PLIFL 125
P +F+
Sbjct: 536 PCLFI 540
>At2g41580 putative non-LTR retroelement reverse transcriptase
Length = 1094
Score = 103 bits (258), Expect = 2e-22
Identities = 50/125 (40%), Positives = 78/125 (62%), Gaps = 1/125 (0%)
Query: 2 IANRIKYILPNITNDFQSTFVPGRLITDNSLIVFETFHYIRKTRTNNNGYVGIKLDIAKA 61
++ R+K LP I + QS FV RL++DN ++ E H +R + ++ K D++KA
Sbjct: 250 LSARLKKYLPVIVSPTQSAFVAERLVSDNIILAHEIVHNLRTNEKISKDFMVFKTDMSKA 309
Query: 62 YDSLKWNFIEDTLTAMGFPINLINTIMLCIRCVTFSILINGQPTEPFSPQRGIRQGDPF- 120
YD ++W F++ L A+GF IN +M C+ V++S+LINGQP +P RG+RQGDP
Sbjct: 310 YDRVEWPFLKGILLALGFNSTWINWMMACVSSVSYSVLINGQPFGHITPHRGLRQGDPLS 369
Query: 121 PLIFL 125
P +F+
Sbjct: 370 PFLFV 374
>At4g09710 RNA-directed DNA polymerase -like protein
Length = 1274
Score = 103 bits (257), Expect = 3e-22
Identities = 51/125 (40%), Positives = 74/125 (58%), Gaps = 1/125 (0%)
Query: 2 IANRIKYILPNITNDFQSTFVPGRLITDNSLIVFETFHYIRKTRTNNNGYVGIKLDIAKA 61
+ R++ L + + QS FVPGR I DN LI E H++R + + IK D++KA
Sbjct: 462 LTRRLQPWLSELISLHQSAFVPGRAIADNVLITHEILHFLRVSGAKKYCSMAIKTDMSKA 521
Query: 62 YDSLKWNFIEDTLTAMGFPINLINTIMLCIRCVTFSILINGQPTEPFSPQRGIRQGDPF- 120
YD +KWNF+++ L +GF I +M C+ V++S LING P P RG+RQGDP
Sbjct: 522 YDRIKWNFLQEVLMRLGFHDKWIRWVMQCVCTVSYSFLINGSPQGSVVPSRGLRQGDPLS 581
Query: 121 PLIFL 125
P +F+
Sbjct: 582 PYLFI 586
>At3g32110 non-LTR reverse transcriptase, putative
Length = 1911
Score = 103 bits (257), Expect = 3e-22
Identities = 50/130 (38%), Positives = 81/130 (61%), Gaps = 2/130 (1%)
Query: 2 IANRIKYILPNITNDFQSTFVPGRLITDNSLIVFETFHYIRKTRTNNNGYVGIKLDIAKA 61
+ R+K ++ + Q++F+PGRL TDN ++V E H +R+ + G++ +KLD+ KA
Sbjct: 1061 MVGRLKGVINKLIGPAQTSFIPGRLSTDNIVVVQEVVHSMRRKK-GVKGWMLLKLDLEKA 1119
Query: 62 YDSLKWNFIEDTLTAMGFPINLINTIMLCIRCVTFSILINGQPTEPFSPQRGIRQGDPF- 120
YD ++W+ +EDTL A G P + IM C+ + +L NG+ T+ F P RG+RQGDP
Sbjct: 1120 YDRIRWDLLEDTLKAAGLPGTWVQWIMKCVEGPSMRLLWNGEKTDAFKPLRGLRQGDPLS 1179
Query: 121 PLIFLYYVLR 130
P +F+ + R
Sbjct: 1180 PYLFVLCIER 1189
>At1g24640 hypothetical protein
Length = 1270
Score = 102 bits (255), Expect = 5e-22
Identities = 50/125 (40%), Positives = 80/125 (64%), Gaps = 1/125 (0%)
Query: 2 IANRIKYILPNITNDFQSTFVPGRLITDNSLIVFETFHYIRKTRTNNNGYVGIKLDIAKA 61
+A R++ LP I +D QS FV RLITDN L+ E H ++ ++ ++ +K D++KA
Sbjct: 484 MAKRLQPWLPEIVSDTQSAFVSERLITDNILVAHELVHSLKVHPRISSEFMAVKSDMSKA 543
Query: 62 YDSLKWNFIEDTLTAMGFPINLINTIMLCIRCVTFSILINGQPTEPFSPQRGIRQGDPF- 120
YD ++W+++ L ++GF + +N IM+C+ VT+S+LIN P QRG+RQGDP
Sbjct: 544 YDRVEWSYLRSLLLSLGFHLKWVNWIMVCVSSVTYSVLINDCPFGLIILQRGLRQGDPLS 603
Query: 121 PLIFL 125
P +F+
Sbjct: 604 PFLFV 608
>At2g16680 putative non-LTR retroelement reverse transcriptase
Length = 1319
Score = 102 bits (254), Expect = 6e-22
Identities = 52/122 (42%), Positives = 78/122 (63%), Gaps = 1/122 (0%)
Query: 5 RIKYILPNITNDFQSTFVPGRLITDNSLIVFETFHYIRKTRTNNNGYVGIKLDIAKAYDS 64
++K LP+I + QS F RLI+DN LI E H +R + ++ K D++KAYD
Sbjct: 476 KLKKHLPSIVSPSQSAFFAERLISDNILIAHEIVHSLRTNDKISKEFMVFKTDMSKAYDR 535
Query: 65 LKWNFIEDTLTAMGFPINLINTIMLCIRCVTFSILINGQPTEPFSPQRGIRQGDPF-PLI 123
++W+F+++ L A+GF I+ IM C+ VT+S+LINGQ +P+RGIRQGDP P +
Sbjct: 536 VEWSFLQEILVALGFNDKWISWIMGCVTSVTYSVLINGQHFGHITPERGIRQGDPISPFL 595
Query: 124 FL 125
F+
Sbjct: 596 FV 597
>At4g15590 reverse transcriptase like protein
Length = 929
Score = 101 bits (251), Expect = 1e-21
Identities = 49/127 (38%), Positives = 80/127 (62%), Gaps = 2/127 (1%)
Query: 5 RIKYILPNITNDFQSTFVPGRLITDNSLIVFETFHYIRKTRTNNNGYVGIKLDIAKAYDS 64
R+K ++ + Q++F+PGRL DN ++V E H +R+ + G++ +KLD+ KAYD
Sbjct: 340 RLKNVISKLIGPAQASFIPGRLSFDNIVVVQEAVHSMRRKK-GRKGWMLLKLDLEKAYDR 398
Query: 65 LKWNFIEDTLTAMGFPINLINTIMLCIRCVTFSILINGQPTEPFSPQRGIRQGDPF-PLI 123
++W+F+ +TL A G I IM C+ S+L NG+ T+ F+P+RG+RQGDP P +
Sbjct: 399 IRWDFLAETLEAAGLSEGWIKRIMECVAGPEMSLLWNGEKTDSFTPERGLRQGDPISPYL 458
Query: 124 FLYYVLR 130
F+ + R
Sbjct: 459 FVLCIER 465
>At2g11240 pseudogene
Length = 1044
Score = 99.0 bits (245), Expect = 7e-21
Identities = 47/125 (37%), Positives = 76/125 (60%), Gaps = 1/125 (0%)
Query: 2 IANRIKYILPNITNDFQSTFVPGRLITDNSLIVFETFHYIRKTRTNNNGYVGIKLDIAKA 61
++ R++ IL I ++ QS FVP R DN LI E HY++ ++ +K +++KA
Sbjct: 347 LSRRLQPILQEIISENQSAFVPKRASNDNVLITHEALHYLKSLGAEKRCFMAVKTNMSKA 406
Query: 62 YDSLKWNFIEDTLTAMGFPINLINTIMLCIRCVTFSILINGQPTEPFSPQRGIRQGDPF- 120
YD ++W+FI+ + MGF I+ I+ CI V++S L+NG +P+RG+RQGDP
Sbjct: 407 YDRIEWDFIKLVMQEMGFHQTWISWILQCITTVSYSFLLNGSAQGAVTPERGLRQGDPLS 466
Query: 121 PLIFL 125
P +F+
Sbjct: 467 PFLFI 471
>At2g07730 putative non-LTR retroelement reverse transcriptase
Length = 970
Score = 97.4 bits (241), Expect = 2e-20
Identities = 49/125 (39%), Positives = 77/125 (61%), Gaps = 2/125 (1%)
Query: 2 IANRIKYILPNITNDFQSTFVPGRLITDNSLIVFETFHYIRKTRTNNNGYVGIKLDIAKA 61
I NR+K ++ + Q+ F+PGRL DN ++V E H +R+ + G++ +KLD+ KA
Sbjct: 235 IVNRLKKVILKLIGPAQANFIPGRLSIDNIVLVQEAVHSMRRKK-GRKGWMLLKLDLEKA 293
Query: 62 YDSLKWNFIEDTLTAMGFPINLINTIMLCIRCVTFSILINGQPTEPFSPQRGIRQGDPF- 120
YD ++WNF+++TL A G + IM + + S+L NG T+ F P RG+RQGDP
Sbjct: 294 YDRIRWNFLQETLVATGLSEVWTHRIMAGVTDPSMSVLWNGGKTDSFVPARGLRQGDPLS 353
Query: 121 PLIFL 125
P +F+
Sbjct: 354 PYLFV 358
>At2g31080 putative non-LTR retroelement reverse transcriptase
Length = 1231
Score = 94.7 bits (234), Expect = 1e-19
Identities = 46/125 (36%), Positives = 78/125 (61%), Gaps = 2/125 (1%)
Query: 2 IANRIKYILPNITNDFQSTFVPGRLITDNSLIVFETFHYIRKTRTNNNGYVGIKLDIAKA 61
+ R+K ++ + Q++F+PGRL DN ++V E H +R+ + G++ +KLD+ KA
Sbjct: 385 MVTRLKNVISKLIGPAQASFIPGRLSIDNIVLVQEAVHSMRRKK-GRKGWMLLKLDLEKA 443
Query: 62 YDSLKWNFIEDTLTAMGFPINLINTIMLCIRCVTFSILINGQPTEPFSPQRGIRQGDPF- 120
YD ++W+F+++TL A G + IM + + S+L NG+ T+ F P RG+RQGDP
Sbjct: 444 YDRVRWDFLQETLEAAGLSEGWTSRIMAGVTDPSMSVLWNGERTDSFVPARGLRQGDPLS 503
Query: 121 PLIFL 125
P +F+
Sbjct: 504 PYLFV 508
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.344 0.154 0.513
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,307,244
Number of Sequences: 26719
Number of extensions: 487484
Number of successful extensions: 1571
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1478
Number of HSP's gapped (non-prelim): 69
length of query: 600
length of database: 11,318,596
effective HSP length: 105
effective length of query: 495
effective length of database: 8,513,101
effective search space: 4213984995
effective search space used: 4213984995
T: 11
A: 40
X1: 15 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.6 bits)
S2: 63 (28.9 bits)
Medicago: description of AC119408.1