BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC149577.7 - phase: 0
(173 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC86245 weakly similar to GP|9279671|dbj|BAB01228.1 transport in... 356 3e-99
TC86244 weakly similar to PIR|T48087|T48087 transport inhibitor ... 272 6e-74
TC88184 similar to GP|11935209|gb|AAG42020.1 putative transport ... 197 2e-51
TC85267 similar to GP|9279671|dbj|BAB01228.1 transport inhibitor... 195 9e-51
TC80432 similar to PIR|T52139|T52139 LRR-containing F-box protei... 105 9e-24
TC84158 similar to PIR|T52139|T52139 LRR-containing F-box protei... 45 2e-10
AW586059 similar to GP|13249030|gb F-box containing protein TIR1... 59 7e-10
TC81462 similar to GP|21536497|gb|AAM60829.1 F-box protein famil... 57 3e-09
TC76362 similar to GP|10716949|gb|AAG21977.1 SKP1 interacting pa... 45 1e-05
TC81565 similar to GP|6041850|gb|AAF02159.1| unknown protein {Ar... 42 1e-04
TC89980 similar to PIR|D96512|D96512 hypothetical protein F2G19.... 40 4e-04
BG581615 similar to GP|10177368|dbj contains similarity to heat ... 40 5e-04
TC80249 weakly similar to GP|10716947|gb|AAG21976.1 SKP1 interac... 39 0.001
BQ139819 38 0.002
TC88495 similar to GP|15420162|gb|AAK97303.1 F-box containing pr... 36 0.009
TC86421 similar to GP|2407790|gb|AAB70660.1| grr1 {Glycine max},... 35 0.015
BG646112 weakly similar to GP|10177368|dbj contains similarity t... 35 0.020
AW697041 35 0.020
BI311086 34 0.034
TC79219 similar to GP|15810000|gb|AAL06927.1 AT5g23340/MKD15_20 ... 33 0.075
>TC86245 weakly similar to GP|9279671|dbj|BAB01228.1 transport inhibitor
response-like protein {Arabidopsis thaliana}, partial
(80%)
Length = 2260
Score = 356 bits (913), Expect = 3e-99
Identities = 173/173 (100%), Positives = 173/173 (100%)
Frame = +3
Query: 1 MNMVECKRKKESQGEKNNNMDSNSDFPDEVLERVLGMMKSRKDRSSVSLVCKEWYNAERW 60
MNMVECKRKKESQGEKNNNMDSNSDFPDEVLERVLGMMKSRKDRSSVSLVCKEWYNAERW
Sbjct: 441 MNMVECKRKKESQGEKNNNMDSNSDFPDEVLERVLGMMKSRKDRSSVSLVCKEWYNAERW 620
Query: 61 SRRNVFIGNCYAVSPEILTRRFPNIRSVTMKGKPRFSDFNLVPANWGADIHSWLVVFADK 120
SRRNVFIGNCYAVSPEILTRRFPNIRSVTMKGKPRFSDFNLVPANWGADIHSWLVVFADK
Sbjct: 621 SRRNVFIGNCYAVSPEILTRRFPNIRSVTMKGKPRFSDFNLVPANWGADIHSWLVVFADK 800
Query: 121 YPFLEELRLKRMAVSDESLEFLAFSFPNFKALSLLSCDGFSTDGLAAVATNCK 173
YPFLEELRLKRMAVSDESLEFLAFSFPNFKALSLLSCDGFSTDGLAAVATNCK
Sbjct: 801 YPFLEELRLKRMAVSDESLEFLAFSFPNFKALSLLSCDGFSTDGLAAVATNCK 959
>TC86244 weakly similar to PIR|T48087|T48087 transport inhibitor response
protein TIR1 [imported] - Arabidopsis thaliana, partial
(48%)
Length = 2369
Score = 272 bits (695), Expect = 6e-74
Identities = 134/173 (77%), Positives = 148/173 (85%)
Frame = +1
Query: 1 MNMVECKRKKESQGEKNNNMDSNSDFPDEVLERVLGMMKSRKDRSSVSLVCKEWYNAERW 60
+NM ECKR+K DEVL++VLG +KSRKDR+S SLVCK+WYNAER
Sbjct: 220 LNMEECKREK-----------------DEVLKQVLGTVKSRKDRNSASLVCKQWYNAERL 348
Query: 61 SRRNVFIGNCYAVSPEILTRRFPNIRSVTMKGKPRFSDFNLVPANWGADIHSWLVVFADK 120
SRRNVFIGNCY+V+PEILTRRFPNIRS+T+KGKPRFSDFNLVP NWGADIHSWLVVFA+K
Sbjct: 349 SRRNVFIGNCYSVTPEILTRRFPNIRSITLKGKPRFSDFNLVPENWGADIHSWLVVFAEK 528
Query: 121 YPFLEELRLKRMAVSDESLEFLAFSFPNFKALSLLSCDGFSTDGLAAVATNCK 173
YPFLEELRLKRM V+DESLEFLAFSF NFKALSLLSC+GFSTDGLAAVA NCK
Sbjct: 529 YPFLEELRLKRMVVTDESLEFLAFSFHNFKALSLLSCEGFSTDGLAAVAANCK 687
>TC88184 similar to GP|11935209|gb|AAG42020.1 putative transport inhibitor
response TIR1 AtFBL1 protein {Arabidopsis thaliana},
partial (39%)
Length = 742
Score = 197 bits (500), Expect = 2e-51
Identities = 84/148 (56%), Positives = 112/148 (74%)
Frame = +2
Query: 26 FPDEVLERVLGMMKSRKDRSSVSLVCKEWYNAERWSRRNVFIGNCYAVSPEILTRRFPNI 85
FP+EVLE V + S KDR S+SLVCK WY ERW RR VF+GNCYA++P ++ +RFP +
Sbjct: 206 FPEEVLEHVFSFIDSTKDRGSISLVCKSWYEIERWCRRRVFVGNCYAITPAMVIKRFPKV 385
Query: 86 RSVTMKGKPRFSDFNLVPANWGADIHSWLVVFADKYPFLEELRLKRMAVSDESLEFLAFS 145
RS+T+KGKP F+DFNLVP WG + W+ A +P LEE++LKRM +SD+ L+ +A S
Sbjct: 386 RSITLKGKPHFADFNLVPEGWGGYVCPWIKAMAVAFPCLEEIKLKRMVISDDCLDLIAKS 565
Query: 146 FPNFKALSLLSCDGFSTDGLAAVATNCK 173
F NFK L L+SC+GF+TDGLA++A NC+
Sbjct: 566 FKNFKVLVLISCEGFTTDGLASIAANCR 649
>TC85267 similar to GP|9279671|dbj|BAB01228.1 transport inhibitor
response-like protein {Arabidopsis thaliana}, partial
(48%)
Length = 1795
Score = 195 bits (495), Expect = 9e-51
Identities = 94/162 (58%), Positives = 120/162 (74%)
Frame = +1
Query: 12 SQGEKNNNMDSNSDFPDEVLERVLGMMKSRKDRSSVSLVCKEWYNAERWSRRNVFIGNCY 71
S+ EKN N FPDEV+E V + S DR+S+SLVCK WY ER++R+ VFIGNCY
Sbjct: 898 SEREKNMNY-----FPDEVIEHVFDYVVSHSDRNSLSLVCKSWYRIERFTRQRVFIGNCY 1062
Query: 72 AVSPEILTRRFPNIRSVTMKGKPRFSDFNLVPANWGADIHSWLVVFADKYPFLEELRLKR 131
++SPE L RFP+++S+T+KGKP F+DF+LVP WG ++ W+ A LEELRLKR
Sbjct: 1063 SISPERLVERFPDLKSLTLKGKPHFADFSLVPHGWGGFVYPWIEALAKNKVGLEELRLKR 1242
Query: 132 MAVSDESLEFLAFSFPNFKALSLLSCDGFSTDGLAAVATNCK 173
M VSDESLE L+ SF NFK+L L+SC+GF+TDGLAAVA NC+
Sbjct: 1243 MVVSDESLELLSRSFVNFKSLVLVSCEGFTTDGLAAVAANCR 1368
>TC80432 similar to PIR|T52139|T52139 LRR-containing F-box protein
[imported] - Arabidopsis thaliana, partial (18%)
Length = 621
Score = 105 bits (262), Expect = 9e-24
Identities = 52/131 (39%), Positives = 78/131 (58%)
Frame = +2
Query: 15 EKNNNMDSNSDFPDEVLERVLGMMKSRKDRSSVSLVCKEWYNAERWSRRNVFIGNCYAVS 74
E N M N D VL+ V+ + KDR +VS VC+ WY + +R++V I CY +
Sbjct: 203 EDNGRM--NVRLSDVVLDCVMPYIHDPKDRDAVSQVCRRWYEIDSQTRKHVTIALCYTTT 376
Query: 75 PEILTRRFPNIRSVTMKGKPRFSDFNLVPANWGADIHSWLVVFADKYPFLEELRLKRMAV 134
P+ L RRFP++ S+ +KGKPR + FNL+P NWG ++ W+ + + L+ L +RM V
Sbjct: 377 PDRLRRRFPHLESLKLKGKPRAAMFNLIPENWGGFVNPWVREIENYFDCLKSLHFRRMIV 556
Query: 135 SDESLEFLAFS 145
+D+ L LA S
Sbjct: 557 TDDDLSILARS 589
>TC84158 similar to PIR|T52139|T52139 LRR-containing F-box protein
[imported] - Arabidopsis thaliana, partial (11%)
Length = 614
Score = 44.7 bits (104), Expect(2) = 2e-10
Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Frame = +3
Query: 12 SQGEKNNNMDSNSD-FPDEVLERVLGMMKSRKDRSSVSLVCKEWYNAERWSRRNVFIGNC 70
S E++ N+ N + D VL+ V+ + KDR +VS VC+ W+ + +R++V I C
Sbjct: 324 SMAEEDRNVRLNGNRIIDVVLDCVIPYITDPKDRDAVSQVCRRWHELDSMTRKHVTIALC 503
Query: 71 YAVSP 75
Y +P
Sbjct: 504 YTTTP 518
Score = 36.6 bits (83), Expect(2) = 2e-10
Identities = 13/25 (52%), Positives = 20/25 (80%)
Frame = +2
Query: 82 FPNIRSVTMKGKPRFSDFNLVPANW 106
FP++ S+ +KGKPR + FNL+P +W
Sbjct: 539 FPHLESLKLKGKPRAAMFNLIPEDW 613
>AW586059 similar to GP|13249030|gb F-box containing protein TIR1 {Populus
tremula x Populus tremuloides}, partial (25%)
Length = 545
Score = 59.3 bits (142), Expect = 7e-10
Identities = 27/52 (51%), Positives = 38/52 (72%)
Frame = +3
Query: 122 PFLEELRLKRMAVSDESLEFLAFSFPNFKALSLLSCDGFSTDGLAAVATNCK 173
P+LE+L LKRM V+D+ L +A SF F+ L L+ C+GF T GLAA+A+ C+
Sbjct: 6 PWLEKLHLKRMNVTDDDLGVIADSFAGFRELLLVCCEGFGTPGLAAIASKCR 161
>TC81462 similar to GP|21536497|gb|AAM60829.1 F-box protein family AtFBL4
{Arabidopsis thaliana}, partial (67%)
Length = 1452
Score = 57.4 bits (137), Expect = 3e-09
Identities = 45/183 (24%), Positives = 80/183 (43%), Gaps = 12/183 (6%)
Frame = +2
Query: 2 NMVECKRKKESQGEKNNNMDSNSDFPDEVLERVLGMMKSRKDRSSVSLVCKEWYNAERWS 61
N+ C + S + N+ PDE++ + + S+ R + SLVC W ER +
Sbjct: 41 NLQSCHSRITSDDSMKGHDWINTCLPDELIVEIFRRLDSKPTRDAASLVCNRWLRLERLT 220
Query: 62 RRNVFIGNCYA--VSPEILTRRFPNIRSVTMKGKPRFSDFNLVPANWGADIHSWLVVFAD 119
R ++ IG + + ++L RF NI +V + + S +P G + +
Sbjct: 221 RSSIRIGATGSPDLFVQLLASRFFNITAVHIDERLSIS----LPVQLGRRRENSSPSSSL 388
Query: 120 KYPFL----------EELRLKRMAVSDESLEFLAFSFPNFKALSLLSCDGFSTDGLAAVA 169
K ++ EE + +SD L LA FP + L L+ C ++ GL+++A
Sbjct: 389 KLHYVNKRIGSSSSSEENEFDSLCLSDNGLIALADGFPKLEKLKLIWCSNVTSFGLSSLA 568
Query: 170 TNC 172
+ C
Sbjct: 569 SKC 577
>TC76362 similar to GP|10716949|gb|AAG21977.1 SKP1 interacting partner 2
{Arabidopsis thaliana}, partial (57%)
Length = 1307
Score = 45.1 bits (105), Expect = 1e-05
Identities = 41/158 (25%), Positives = 75/158 (46%), Gaps = 4/158 (2%)
Frame = +1
Query: 18 NNMDSNSDFPDEVLERVLGMMKSRKDRSSVSLVCKEWYNAERWSRRNVFIGNCYAVSPEI 77
N ++ + + PDE L +L + + DR S S+VCK W+ E SR+ + + N A +I
Sbjct: 223 NGVNYSEEIPDECLAGILHFLDAG-DRKSCSVVCKRWFRVEGESRQRLSL-NAEAKLVDI 396
Query: 78 ---LTRRFPNIRSVTMKGKPRFSDFNLVPANWGADIHSWLVVFADKYPFLEELRLKR-MA 133
L R+ ++ + ++ + + N L++ + + L L+L+
Sbjct: 397 VPSLFNRYDSVTKLALRCNKKSTSIN----------DDALILISLRCKNLTRLKLRACRE 546
Query: 134 VSDESLEFLAFSFPNFKALSLLSCDGFSTDGLAAVATN 171
V++ + LA + N K LS++SC F G+ AV N
Sbjct: 547 VTEIGMLGLARNCKNLKKLSVVSC-LFGVKGIRAVVDN 657
>TC81565 similar to GP|6041850|gb|AAF02159.1| unknown protein {Arabidopsis
thaliana}, partial (12%)
Length = 1070
Score = 42.0 bits (97), Expect = 1e-04
Identities = 35/149 (23%), Positives = 61/149 (40%), Gaps = 30/149 (20%)
Frame = +3
Query: 22 SNSDFPDEVLERVLGMMKSRKDRSSVSLVCKEWYNAERWSRRNVFIG------------- 68
S + PD+ L + + R DR S L C+ W + ++RR +
Sbjct: 558 SITHLPDDCLTIIFHGLNCRTDRESFGLTCRRWLRIQNFNRRTLQFECSFSILNPSSLSA 737
Query: 69 ---NCYAVSPEILTRRFPNIRSVTMKGKPRFSDFNLVP-ANWGADIHS------------ 112
+ Y V L RRF ++ S+++ G D L ++G+++
Sbjct: 738 KGLDVYTVHIHRLLRRFQHLESLSLCGCTELDDSXLTRLLSYGSNLQKLNLDCCWKVTNY 917
Query: 113 WLVVFADKYPFLEELRL-KRMAVSDESLE 140
WL + A P L + L +R+ ++DE LE
Sbjct: 918 WLSLTASGCPSLTTIXLYRRLIITDEGLE 1004
>TC89980 similar to PIR|D96512|D96512 hypothetical protein F2G19.16
[imported] - Arabidopsis thaliana, partial (22%)
Length = 980
Score = 40.4 bits (93), Expect = 4e-04
Identities = 32/114 (28%), Positives = 50/114 (43%), Gaps = 2/114 (1%)
Frame = +1
Query: 19 NMDSNSDFPDEVLERVLGMMKSRKDRSSVSLVCKEWYNAERWSRRNVFIGNCYAVSPEI- 77
N D SD PDE L V + DR+ SLVC+ W + E SR+ + + + P I
Sbjct: 613 NSDYISDLPDECLAIVFQSLNP-SDRNQCSLVCRRWLHVEGQSRQRLSLNAKLDLLPVIP 789
Query: 78 -LTRRFPNIRSVTMKGKPRFSDFNLVPANWGADIHSWLVVFADKYPFLEELRLK 130
L RF ++ + +K R LV+ +++ P L L+L+
Sbjct: 790 SLFNRFDSVTKLALKCDRRSVSIR----------DEALVIISERCPNLTRLKLR 921
>BG581615 similar to GP|10177368|dbj contains similarity to heat shock
transcription factor HSF30~gene_id:K16L22.13, partial
(3%)
Length = 825
Score = 40.0 bits (92), Expect = 5e-04
Identities = 42/160 (26%), Positives = 70/160 (43%), Gaps = 7/160 (4%)
Frame = +3
Query: 7 KRKKESQGEKNNNMDSNSDFPDEVLERVLGMMKSRKDRSSVSLVCKEWYNAERWSRRNVF 66
+R+K D S PD +L +L + +R ++++LV + W N + ++ F
Sbjct: 273 RRQKACLAAATGGTDRLSGLPDSILCHILSFLPTRTSVATMNLVSRRWRNLWKHAQVFDF 452
Query: 67 IGNCYAVSPEILTRRFPNIRSVTMKGKPR-FSDFNLV---PANWGADIHSWLV---VFAD 119
+C VS + RF + SV K R F+L + +DI + V + A
Sbjct: 453 DFDCDGVSADYERFRF-FVNSVLALRKSRDIQKFHLTITSDCQFMSDIQNNYVEMWICAA 629
Query: 120 KYPFLEELRLKRMAVSDESLEFLAFSFPNFKALSLLSCDG 159
P L+EL L + +D+ ++ F N L LS DG
Sbjct: 630 TGPHLQELSLIIPSYADQIVKLSPSLFMNCSNLVSLSLDG 749
>TC80249 weakly similar to GP|10716947|gb|AAG21976.1 SKP1 interacting
partner 1 {Arabidopsis thaliana}, partial (72%)
Length = 1197
Score = 38.9 bits (89), Expect = 0.001
Identities = 37/151 (24%), Positives = 62/151 (40%), Gaps = 7/151 (4%)
Frame = +1
Query: 29 EVLERVLGMMKSRKDRSSVSLVCKEWYNA--ERWSRRNVFIGNCY----AVSPEILTRRF 82
E L +L + LVCK W+NA E S +VF + Y SP T +F
Sbjct: 76 ECLINILSRLSFEDQWRGSLLVCKSWFNAFKEEPSLHSVFNLDPYFDKPLESPRWWTLQF 255
Query: 83 PNIRSVTMKGKPRFSDFNLVPANWGADIHSWLVVFADKYPFLEELRLKRMA-VSDESLEF 141
+ ++ +++ L L + A + P LE L ++ V+D+S+
Sbjct: 256 ESQIDSMLRSIVQWTHIFLTQIRIRHCSDRSLALVAQRCPNLEVLSIRSCPRVTDDSMSK 435
Query: 142 LAFSFPNFKALSLLSCDGFSTDGLAAVATNC 172
+A PN + L + C + + L + NC
Sbjct: 436 IATGCPNLRELDISYCYEITHESLVLIGRNC 528
>BQ139819
Length = 239
Score = 38.1 bits (87), Expect = 0.002
Identities = 24/76 (31%), Positives = 38/76 (49%), Gaps = 3/76 (3%)
Frame = +3
Query: 16 KNNNMDSNSDFPDEVLERVLGMMKSRKDRSSVSLVCKEWYNAERWSRRNVFIGNCYAVSP 75
K N+M N P+ ++ +L +K DR++VSL CK Y + R ++ +G +
Sbjct: 6 KENSMMDN--IPEHIIWEILNRIKKTSDRNNVSLACKRLYYLDNAQRHSLKVGCGMDPAN 179
Query: 76 EILT---RRFPNIRSV 88
E LT RF N+ V
Sbjct: 180EALTCLCTRFLNLSXV 227
>TC88495 similar to GP|15420162|gb|AAK97303.1 F-box containing protein ORE9
{Arabidopsis thaliana}, partial (12%)
Length = 876
Score = 35.8 bits (81), Expect = 0.009
Identities = 16/46 (34%), Positives = 28/46 (60%)
Frame = +1
Query: 17 NNNMDSNSDFPDEVLERVLGMMKSRKDRSSVSLVCKEWYNAERWSR 62
NN+ + S P+E+L +V + + R+S+SLVC ++ ER +R
Sbjct: 172 NNSATTVSHLPEEILSKVFTGITDTRTRNSLSLVCHSFFKLERKTR 309
>TC86421 similar to GP|2407790|gb|AAB70660.1| grr1 {Glycine max}, partial
(74%)
Length = 2856
Score = 35.0 bits (79), Expect = 0.015
Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Frame = +1
Query: 92 GKPRFSDFNLVPANWGADIHSWLVVFADKYPFLEELRL-KRMAVSDESLEFLAFSFPNFK 150
G P F+L + D L+ A+ LE+L L K A+SD++L +A PN
Sbjct: 778 GCPSLKSFSLWNVSSVGD--EGLIEIANGCQKLEKLDLCKCPAISDKALITVAKKCPNLT 951
Query: 151 ALSLLSCDGFSTDGLAAVATNC 172
LSL SC +GL A+ C
Sbjct: 952 ELSLESCPSIRNEGLQAIGKFC 1017
Score = 34.7 bits (78), Expect = 0.020
Identities = 19/56 (33%), Positives = 30/56 (52%), Gaps = 1/56 (1%)
Frame = +1
Query: 114 LVVFADKYPFLEELRLKRM-AVSDESLEFLAFSFPNFKALSLLSCDGFSTDGLAAV 168
L+ A K P L EL L+ ++ +E L+ + PN KA+S+ C G G+A +
Sbjct: 916 LITVAKKCPNLTELSLESCPSIRNEGLQAIGKFCPNLKAISIKDCAGVGDQGIAGL 1083
>BG646112 weakly similar to GP|10177368|dbj contains similarity to heat shock
transcription factor HSF30~gene_id:K16L22.13, partial
(5%)
Length = 742
Score = 34.7 bits (78), Expect = 0.020
Identities = 39/151 (25%), Positives = 63/151 (40%), Gaps = 11/151 (7%)
Frame = +2
Query: 20 MDSNSDFPDEVLERVLGMMKSRKDRSSVSLVCKEWYNAERWSRRNVFI----GNCYAVSP 75
+D S PD +L +L + ++ + SLV + W + W NVF+ NC +P
Sbjct: 11 IDRMSSLPDSLLCHILSFLPTKTSVMTTSLVSRRWRHL--WEHLNVFVFDDKSNCNCRNP 184
Query: 76 EILTRRFPNIRSVTMKGKPR-FSDFNLVPANWGADIHS------WLVVFADKYPFLEELR 128
+ + + SV K R F+L +D++S ++ V A P LE+L
Sbjct: 185 KKFRKFAFFVSSVLSLRKSRHIRKFHLTCCT--SDVYSFPGECVYMWVRAAIGPHLEDLS 358
Query: 129 LKRMAVSDESLEFLAFSFPNFKALSLLSCDG 159
L + + +L S N L LS G
Sbjct: 359 LNITNCHGDDMVYLPPSLLNCTNLVSLSLFG 451
>AW697041
Length = 504
Score = 34.7 bits (78), Expect = 0.020
Identities = 15/46 (32%), Positives = 25/46 (53%)
Frame = +1
Query: 87 SVTMKGKPRFSDFNLVPANWGADIHSWLVVFADKYPFLEELRLKRM 132
S+T+K K F+DFNL P W + W+ + LEE++ ++
Sbjct: 205 SITLKVKLHFADFNLEPEGWSGYVCPWIKDMVVAF*CLEEIQSSKL 342
>BI311086
Length = 718
Score = 33.9 bits (76), Expect = 0.034
Identities = 19/51 (37%), Positives = 24/51 (46%)
Frame = +1
Query: 122 PFLEELRLKRMAVSDESLEFLAFSFPNFKALSLLSCDGFSTDGLAAVATNC 172
P LE L L V DE+L ++ P L LL CD + G+ V NC
Sbjct: 313 PDLEVLNLTNTEVDDEALYIISNRCPALLQLVLLRCDYITDKGVMHVVNNC 465
>TC79219 similar to GP|15810000|gb|AAL06927.1 AT5g23340/MKD15_20
{Arabidopsis thaliana}, partial (78%)
Length = 1619
Score = 32.7 bits (73), Expect = 0.075
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +3
Query: 23 NSDFPDEVLERVLGMMKSRKDRSSVSLVCKEWYNAERWSRRNV 65
N D+ L +L + S KD+ + LVCK W + R+ +
Sbjct: 132 NEALTDDELRSILAKVDSEKDKETFGLVCKRWLRLQSTERKKL 260
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.320 0.134 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,698,803
Number of Sequences: 36976
Number of extensions: 71867
Number of successful extensions: 499
Number of sequences better than 10.0: 63
Number of HSP's better than 10.0 without gapping: 485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 496
length of query: 173
length of database: 9,014,727
effective HSP length: 89
effective length of query: 84
effective length of database: 5,723,863
effective search space: 480804492
effective search space used: 480804492
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Medicago: description of AC149577.7