BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC149496.5 + phase: 0
(1716 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BG644690 weakly similar to GP|18542179|gb putative pol protein {... 198 3e-68
BG586159 weakly similar to PIR|T47841|T4 hypothetical protein T2... 202 7e-52
CB893805 similar to GP|10177935|d copia-type polyprotein {Arabid... 184 3e-46
AW689768 weakly similar to GP|10177485|d polyprotein {Arabidopsi... 176 7e-44
BG587156 similar to PIR|G85055|G8 probable polyprotein [imported... 165 2e-40
BI309716 weakly similar to PIR|G96722|G9 hypothetical protein F2... 160 5e-39
TC93066 weakly similar to GP|19920130|gb|AAM08562.1 Putative ret... 124 4e-28
BG587170 similar to PIR|F86470|F8 probable retroelement polyprot... 118 2e-26
AJ502495 weakly similar to GP|18071369|g putative gag-pol polypr... 114 2e-25
TC85125 weakly similar to SP|P10978|POLX_TOBAC Retrovirus-relate... 70 7e-25
BI262917 weakly similar to GP|19920130|g Putative retroelement {... 102 2e-22
TC89912 weakly similar to PIR|B84512|B84512 probable retroelemen... 98 2e-20
BF650113 weakly similar to GP|4753889|emb| Tpv2-1c {Phaseolus vu... 95 2e-19
BG586293 weakly similar to PIR|E84473|E84 probable retroelement ... 88 2e-17
BE123913 weakly similar to GP|22093573|d polyprotein {Oryza sati... 82 2e-15
BG586273 weakly similar to PIR|F86470|F8 probable retroelement p... 77 4e-14
BG644677 weakly similar to GP|7682800|gb| Hypothetical protein T... 70 7e-12
CB893680 weakly similar to GP|1167523|db ORF(AA 1-1338) {Nicotia... 62 2e-09
AJ499215 weakly similar to GP|6642775|gb| gag-pol polyprotein {V... 59 1e-08
BG587174 similar to PIR|A47759|A4775 retrovirus-related reverse ... 58 4e-08
>BG644690 weakly similar to GP|18542179|gb putative pol protein {Zea mays},
partial (22%)
Length = 629
Score = 198 bits (503), Expect(2) = 3e-68
Identities = 91/141 (64%), Positives = 121/141 (85%)
Frame = -2
Query: 1266 VTRNKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLLSYAINHGIILYQMDVKSAFLNG 1325
+TRNK++LV QGY+Q+EGIDY E F+PVAR+EAIR+L+++A G LYQMDVKSAF+NG
Sbjct: 424 ITRNKSKLVVQGYNQKEGIDYDEAFSPVARMEAIRILIAFAAFMGFKLYQMDVKSAFING 245
Query: 1326 VIEEEVYVKQPPGFEDIKHPDHVYKLKKSLYGLKQAPRAWYDRLSNFLIKNDFERGQVDT 1385
++EEV+VKQPPGFED + P+HV++L K+LYGLKQAPRAWY+RLS FL+KN F+RG++D
Sbjct: 244 DLKEEVFVKQPPGFEDAEVPNHVFRLNKTLYGLKQAPRAWYERLSKFLLKNGFKRGKIDN 65
Query: 1386 TLFGKTLKKDILIVQIYVDDI 1406
TLF + ++LI+Q+YVDDI
Sbjct: 64 TLFLLKRE*ELLIIQVYVDDI 2
Score = 81.3 bits (199), Expect(2) = 3e-68
Identities = 37/62 (59%), Positives = 47/62 (75%)
Frame = -3
Query: 1199 SLIGLLSIIEPKTVEEALSDDGWILAMQEELNQFQRNDVWDLIPKPFQKNIIGTKWVFRN 1258
S +S IEPK V+EAL D WI +MQEEL+QF+R+ VW L+P+P K +IGT+WVFRN
Sbjct: 615 SFSAFISSIEPKNVKEALRDADWINSMQEELHQFERSKVWYLVPRPEGKTVIGTRWVFRN 436
Query: 1259 KL 1260
KL
Sbjct: 435 KL 430
>BG586159 weakly similar to PIR|T47841|T4 hypothetical protein T2O9.150 -
Arabidopsis thaliana, partial (11%)
Length = 732
Score = 202 bits (515), Expect = 7e-52
Identities = 94/217 (43%), Positives = 144/217 (66%), Gaps = 1/217 (0%)
Frame = +1
Query: 1441 IQINQSKEGVYVHQTKYTKELLKKFKLEDCKVMNTPMHPTCTLSKEDTGTVVDQKLYRGM 1500
+++ Q++EG+Y+ Q KY +LL++F +E + P+ P C L K++ G VD Y+ +
Sbjct: 1 VEVIQNEEGIYICQRKYVTDLLERFGMEKSNLSRNPIAPRCKLIKDENGVKVDATKYKQI 180
Query: 1501 IGSLLYLTASRPDILFSVCLCARFQSDPRESHLTAVKRIFRYLKGTTNLGLLYRKSLDYK 1560
+G L+YL A+RPD+++ + L +RF + P E H+ AVKR+ RYL GT NLG++Y+++ K
Sbjct: 181 VGCLMYLAATRPDLMYVLSLISRFMNCPTELHMHAVKRVLRYLNGTINLGIMYKRNGSEK 360
Query: 1561 LIGFCDADYAGDRIERKSTSGNCQFLGENLISWASKRQATIAMSTAEAEYISAASCCTQL 1620
L + D+DYAGD +RKSTSG L +SW+SK+Q + +ST +AE+I+AA C Q
Sbjct: 361 LEAYTDSDYAGDLDDRKSTSGYVFMLSSGAVSWSSKKQPVVTLSTTKAEFIAAAFCACQS 540
Query: 1621 LWMKHQLEDY-QINANSIPIYCDNTAAICLSKNPILH 1656
+WM+ LE + SI +YCDN + I LSKNP+LH
Sbjct: 541 VWMRRVLEKLGYTQSGSITMYCDNNSTIKLSKNPVLH 651
>CB893805 similar to GP|10177935|d copia-type polyprotein {Arabidopsis
thaliana}, partial (14%)
Length = 778
Score = 184 bits (467), Expect = 3e-46
Identities = 97/257 (37%), Positives = 158/257 (60%), Gaps = 5/257 (1%)
Frame = +3
Query: 1201 IGLLSII-EPKTVEEALSDDGWILAMQEELNQFQRNDVWDLIPKPFQKNIIGTKWVFRNK 1259
+G+L++ +P T EEA+ + W +M E+ +RN+ W+L IG KW+F+ K
Sbjct: 15 LGMLTMTSDPTTFEEAVKSEKWRASMNNEMEATERNNTWELTDLRSGAKTIGLKWIFKTK 194
Query: 1260 LNEKGEVTRNKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLLSYAI---NHGIILYQM 1316
LNE GE+ + KARLVA+GYSQQ G+DYTE FAPVAR + IR++++ A G+ + M
Sbjct: 195 LNENGEIEKYKARLVAKGYSQQYGVDYTEVFAPVARWDTIRMVIALAAQIKRDGVCIS*M 374
Query: 1317 DVKSAFLNGVIEEEVYVKQPPGFEDIKHPDHVYKLKKSLYGLKQAPRAWYDRLSNFLIKN 1376
+ + + + + + + ++K++LYGLKQAPRAWY R+ + K
Sbjct: 375 *KAHSCMEN*MRKFLLINHRVM*RRVIS----*RVKRALYGLKQAPRAWYSRIEAYFTKE 542
Query: 1377 DFERGQVDTTLFGKTLK-KDILIVQIYVDDIIFGSTNASLCKEFSKLMQDEFEMSMMGEL 1435
FE+ + TLF K + ILI+ +YVDD+IF + ++ +EF K M+ EF MS +G++
Sbjct: 543 GFEKCPYEHTLFVKLSEGGKILIISLYVDDLIFIGNDENMFEEFKKSMKKEFNMSDLGKM 722
Query: 1436 KFFLGIQINQSKEGVYV 1452
+FLG+++ Q+++G+Y+
Sbjct: 723 HYFLGVEVTQNEKGIYI 773
>AW689768 weakly similar to GP|10177485|d polyprotein {Arabidopsis thaliana},
partial (9%)
Length = 675
Score = 176 bits (446), Expect = 7e-44
Identities = 94/199 (47%), Positives = 126/199 (63%)
Frame = +1
Query: 1216 LSDDGWILAMQEELNQFQRNDVWDLIPKPFQKNIIGTKWVFRNKLNEKGEVTRNKARLVA 1275
LSD W+ AM+ E N WDL+P P K IG KWV+R K N G V + KARLVA
Sbjct: 82 LSDPRWLQAMKTEYKALIDNKTWDLVPLPPHKKAIGCKWVYRVKENPDGSVNKFKARLVA 261
Query: 1276 QGYSQQEGIDYTETFAPVARLEAIRLLLSYAINHGIILYQMDVKSAFLNGVIEEEVYVKQ 1335
+G+SQ G DYTETF+PV + IRL+L+ AI + + Q+D+ +AFLNG ++EEVY+ Q
Sbjct: 262 KGFSQTLGCDYTETFSPVIKPVTIRLILTIAITYKWEIQQIDINNAFLNGFLQEEVYMSQ 441
Query: 1336 PPGFEDIKHPDHVYKLKKSLYGLKQAPRAWYDRLSNFLIKNDFERGQVDTTLFGKTLKKD 1395
P GFE + V KL KSLYGLKQAPRAWY+ L++ I+ F + + D +L
Sbjct: 442 PQGFE-AANKSLVCKLNKSLYGLKQAPRAWYEXLTSAQIQFGFTKSRCDPSLLIYNQNGA 618
Query: 1396 ILIVQIYVDDIIFGSTNAS 1414
+ + IYVDDI+ ++AS
Sbjct: 619 CIYLXIYVDDILITGSSAS 675
>BG587156 similar to PIR|G85055|G8 probable polyprotein [imported] -
Arabidopsis thaliana, partial (17%)
Length = 618
Score = 165 bits (417), Expect = 2e-40
Identities = 82/183 (44%), Positives = 116/183 (62%)
Frame = -1
Query: 1209 PKTVEEALSDDGWILAMQEELNQFQRNDVWDLIPKPFQKNIIGTKWVFRNKLNEKGEVTR 1268
P++ EEA+ D W ++ E +ND W P K + ++W+F K G + R
Sbjct: 558 PRSYEEAMEDKEWKESVGAEAGAMIKNDTWYESELPKGKKAVSSRWIFTIKYKADGSIER 379
Query: 1269 NKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLLSYAINHGIILYQMDVKSAFLNGVIE 1328
K RLVA+G++ G DY ETFAPVA+L IR++LS A+N G L+QMDVK+AFL G +E
Sbjct: 378 KKTRLVARGFTLTYGEDYIETFAPVAKLHTIRIVLSLAVNLGWGLWQMDVKNAFLQGELE 199
Query: 1329 EEVYVKQPPGFEDIKHPDHVYKLKKSLYGLKQAPRAWYDRLSNFLIKNDFERGQVDTTLF 1388
+EVY+ PPG E + +V +LKK++YGLKQ+PRAWY++LS L F + ++D TLF
Sbjct: 198 DEVYMYPPPGLEHLVKRGNVLRLKKAIYGLKQSPRAWYNKLSTTLNGRGFRKSELDHTLF 19
Query: 1389 GKT 1391
T
Sbjct: 18 TLT 10
>BI309716 weakly similar to PIR|G96722|G9 hypothetical protein F20P5.25
[imported] - Arabidopsis thaliana, partial (10%)
Length = 744
Score = 160 bits (404), Expect = 5e-39
Identities = 89/240 (37%), Positives = 134/240 (55%)
Frame = +2
Query: 1348 VYKLKKSLYGLKQAPRAWYDRLSNFLIKNDFERGQVDTTLFGKTLKKDILIVQIYVDDII 1407
V +L+KS+YGLKQA R WY +LS LI + + D +LF K + +YVDDI+
Sbjct: 20 VCELQKSIYGLKQASRQWYSKLSESLISFGYLQSSSDFSLFTKFKDSSFTTLLVYVDDIV 199
Query: 1408 FGSTNASLCKEFSKLMQDEFEMSMMGELKFFLGIQINQSKEGVYVHQTKYTKELLKKFKL 1467
+ S + + D F++ +G L++FLG+++ +SK+G+ ++Q KYT ELL+
Sbjct: 200 LAGNDISEIQHVKCFLIDRFKIKDLGSLRYFLGLEVARSKQGILLNQRKYTLELLEDSGN 379
Query: 1468 EDCKVMNTPMHPTCTLSKEDTGTVVDQKLYRGMIGSLLYLTASRPDILFSVCLCARFQSD 1527
K TP + L D+ D+ YR +IG L+YLT +RPDI F+V ++F S
Sbjct: 380 LAVKSTLTPYDISLKLHNSDSPLYNDETQYRRLIGKLIYLTTTRPDISFAVQQLSQFVSK 559
Query: 1528 PRESHLTAVKRIFRYLKGTTNLGLLYRKSLDYKLIGFCDADYAGDRIERKSTSGNCQFLG 1587
P++ H A R+ +YLK GL Y + + KL F D+D+A RKS +G FLG
Sbjct: 560 PQQVHYQAAIRVLQYLKTAPAKGLFYSATSNLKLSSFADSDWATCPTTRKSVTGYWVFLG 739
>TC93066 weakly similar to GP|19920130|gb|AAM08562.1 Putative retroelement
{Oryza sativa} [Oryza sativa (japonica cultivar-group)],
partial (10%)
Length = 823
Score = 124 bits (310), Expect = 4e-28
Identities = 72/214 (33%), Positives = 109/214 (50%), Gaps = 2/214 (0%)
Frame = +1
Query: 861 LELLHIDLFGPVNTASLYGSKYGLVIVDDYSRWTWVKFIKSKDYACEVFSSFCTQIQSEK 920
L+ +H DL+GP S G +Y + I+DD+ R WV F++ K+ F + ++++
Sbjct: 97 LDYIHSDLWGPSKVTSYGGRRYMMTIIDDFPRKVWVYFLRYKNETFPTFKKWRILVETQT 276
Query: 921 ELKILKVRSDHGGEFENEPFELFCEKHGILHEFSSPRTPQQNGVVERKNRTLQEMARTMI 980
+ K+ +D+ EF + F FC HGI + PR PQQNGV ER RTL E AR M+
Sbjct: 277 GKNVKKLITDN*LEFCSSDFNEFCTNHGIARHKTIPRNPQQNGVAERMIRTLLERARCML 456
Query: 981 HENNL--AKHFWAEAVNTSCYIQNRIYIRPMLEKTAYELFKGRRPNISYFHQFGCTCYIL 1038
L + W EA +T+C++ NR + K +++ G + S FGC Y L
Sbjct: 457 SNAGL*N*RDLWVEAASTACHLVNRSPHSALDFKVPEDIWSGNLVDYSNLRIFGCPAYAL 636
Query: 1039 NTKDYLKKFDAKAQRGIFLGYSERSKAYRVYNSE 1072
K +A IFL Y+ SK YR++ S+
Sbjct: 637 VNDG---KLAPRAGECIFLSYASESKGYRLWCSD 729
>BG587170 similar to PIR|F86470|F8 probable retroelement polyprotein [imported]
- Arabidopsis thaliana, partial (13%)
Length = 718
Score = 118 bits (296), Expect = 2e-26
Identities = 82/247 (33%), Positives = 129/247 (52%)
Frame = -3
Query: 758 VNKNDKSITFKGKRVENVYKINFSDLADQKVVCLLSMNDKKWVWHKRLGHANWRLISKIS 817
V K D + K V N YK +F+ + S+N K +WH RLGH + R ++ +
Sbjct: 680 VTKGDLYMLEKLDPVSN-YKCSFTSSS--------SLN-KDALWHARLGHPHGRALNLM- 534
Query: 818 KLQLVKGLPNIDYHSDALCGACQKGKIVKSTFKSKDIVSTSRPLELLHIDLFGPVNTASL 877
LP + + + C AC GK K+ F V + +L++ DL+ + S
Sbjct: 533 -------LPGVVFENKN-CEACILGKHCKNVFPRTSTVYENC-FDLIYTDLW-TAPSLSR 384
Query: 878 YGSKYGLVIVDDYSRWTWVKFIKSKDYACEVFSSFCTQIQSEKELKILKVRSDHGGEFEN 937
KY + +D+ S++TW+ I SKD + F +F + + KI +RSD+GGE+ +
Sbjct: 383 DNHKYFVTFIDEKSKYTWLTLIPSKDRVIDAFKNFQAYVTNHYHAKIKILRSDNGGEYTS 204
Query: 938 EPFELFCEKHGILHEFSSPRTPQQNGVVERKNRTLQEMARTMIHENNLAKHFWAEAVNTS 997
F+ + HGILH+ S P TPQQNGV +RKN+ L E+AR+++ + N V+T+
Sbjct: 203 YAFKSHLDHHGILHQTSCPYTPQQNGVAKRKNKHLMEVARSLMFQAN---------VSTA 51
Query: 998 CYIQNRI 1004
CY+ N I
Sbjct: 50 CYLINWI 30
>AJ502495 weakly similar to GP|18071369|g putative gag-pol polyprotein {Oryza
sativa}, partial (9%)
Length = 542
Score = 114 bits (286), Expect = 2e-25
Identities = 56/108 (51%), Positives = 74/108 (67%), Gaps = 1/108 (0%)
Frame = +2
Query: 1567 ADYAGDRIERKSTSGNCQFLGENLISWASKRQATIAMSTAEAEYISAASCCTQLLWMKHQ 1626
+D+AGD RKSTSG LG ISW+SK+Q +A STAEAEYI++ SC TQ +W++
Sbjct: 2 SDWAGDTETRKSTSGYAFHLGTGAISWSSKKQPVVAFSTAEAEYIASTSCATQTVWLRRI 181
Query: 1627 LEDYQINANS-IPIYCDNTAAICLSKNPILHSRAKHIEIKHHFIRDYV 1673
LE N+ IYCDN +AI LSKNP+ H R+KHI+I+ H IR+ +
Sbjct: 182 LEVMHHEQNTPTKIYCDNKSAIALSKNPVFHGRSKHIDIQFHKIRELI 325
>TC85125 weakly similar to SP|P10978|POLX_TOBAC Retrovirus-related Pol
polyprotein from transposon TNT 1-94 [Contains: Protease
(EC 3.4.23.-);, partial (7%)
Length = 705
Score = 70.1 bits (170), Expect(2) = 7e-25
Identities = 35/78 (44%), Positives = 52/78 (65%)
Frame = +1
Query: 1536 VKRIFRYLKGTTNLGLLYRKSLDYKLIGFCDADYAGDRIERKSTSGNCQFLGENLISWAS 1595
VKRI RY+KGT+ + + + S + + G+ D+D+AGD +RKST+G L +SW S
Sbjct: 1 VKRIMRYIKGTSGVAVCFGGS-ELTVRGYVDSDFAGDHDKRKSTTGYVFTLAGGAVSWLS 177
Query: 1596 KRQATIAMSTAEAEYISA 1613
K Q +A+ST EAEY++A
Sbjct: 178 KLQTVVALSTTEAEYMAA 231
Score = 63.9 bits (154), Expect(2) = 7e-25
Identities = 24/65 (36%), Positives = 42/65 (63%)
Frame = +3
Query: 1612 SAASCCTQLLWMKHQLEDYQINANSIPIYCDNTAAICLSKNPILHSRAKHIEIKHHFIRD 1671
S C + +WM+ +E+ I +YCD+ +A+ +++NP HSR KHI I++HF+R+
Sbjct: 228 SLPQACKEAIWMQRLMEELGHKQEQITVYCDSQSALHIARNPAFHSRTKHIGIQYHFVRE 407
Query: 1672 YVQKG 1676
V++G
Sbjct: 408 VVEEG 422
>BI262917 weakly similar to GP|19920130|g Putative retroelement {Oryza sativa}
[Oryza sativa (japonica cultivar-group)], partial (8%)
Length = 426
Score = 102 bits (254), Expect(2) = 2e-22
Identities = 50/113 (44%), Positives = 69/113 (60%)
Frame = +1
Query: 958 TPQQNGVVERKNRTLQEMARTMIHENNLAKHFWAEAVNTSCYIQNRIYIRPMLEKTAYEL 1017
TPQQNGV ER NRTL E R M+ +AK FWAEAV T+CY+ NR + KT E+
Sbjct: 85 TPQQNGVAERMNRTLLERTRAMLKTAGMAKSFWAEAVKTACYVINRSPSTVIDLKTPMEM 264
Query: 1018 FKGRRPNISYFHQFGCTCYILNTKDYLKKFDAKAQRGIFLGYSERSKAYRVYN 1070
+KG+ + S H FGC Y++ K D K+++ IFLGY++ K Y +++
Sbjct: 265 WKGKPVDYSSLHVFGCPVYVMYNSQERTKLDPKSRKCIFLGYADNVKGYXLWD 423
Score = 23.5 bits (49), Expect(2) = 2e-22
Identities = 8/22 (36%), Positives = 15/22 (67%)
Frame = +3
Query: 933 GEFENEPFELFCEKHGILHEFS 954
GE+ + F FC++ GI+ +F+
Sbjct: 9 GEYVDGEFLAFCKQEGIVRQFT 74
>TC89912 weakly similar to PIR|B84512|B84512 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana, partial
(10%)
Length = 814
Score = 98.2 bits (243), Expect = 2e-20
Identities = 51/142 (35%), Positives = 81/142 (56%), Gaps = 2/142 (1%)
Frame = +1
Query: 1535 AVKRIFRYLKGTTNLGLLYRKSLDYK--LIGFCDADYAGDRIERKSTSGNCQFLGENLIS 1592
A+K + +YL + L Y K+ + L G+ DADYAG+ RKS SG L IS
Sbjct: 4 ALKWVLKYLNESLKSSLKYTKAAQEEDALEGYVDADYAGNVDTRKSLSGFVFTLYGTTIS 183
Query: 1593 WASKRQATIAMSTAEAEYISAASCCTQLLWMKHQLEDYQINANSIPIYCDNTAAICLSKN 1652
W + +Q+ + +ST +AEYI+ +W+K + + I + I+CD+ +AI L+ +
Sbjct: 184 WKANQQSVVTLSTTQAEYIAFVEGVKDAIWLKGMIGELGITQEYVKIHCDSQSAIHLANH 363
Query: 1653 PILHSRAKHIEIKHHFIRDYVQ 1674
+ H R KHI+I+ HFIRD ++
Sbjct: 364 QVYHERTKHIDIRLHFIRDMIE 429
>BF650113 weakly similar to GP|4753889|emb| Tpv2-1c {Phaseolus vulgaris},
partial (13%)
Length = 494
Score = 95.1 bits (235), Expect = 2e-19
Identities = 51/122 (41%), Positives = 74/122 (59%), Gaps = 3/122 (2%)
Frame = +1
Query: 1511 RPDILFSVCLCARFQSDPRESHLTAVKRIFRYLKGTTNLGLLY---RKSLDYKLIGFCDA 1567
RPDI +SV + ++F DPR+ HL A RI RY++GT GLL+ KS Y+LI + D+
Sbjct: 121 RPDICYSVSVISKFMHDPRKPHLIAANRILRYVRGTMEYGLLFPYGAKSEVYELICYSDS 300
Query: 1568 DYAGDRIERKSTSGNCQFLGENLISWASKRQATIAMSTAEAEYISAASCCTQLLWMKHQL 1627
D+ GD R+STSG + ISW +K+Q A+S+ EAEYI+ Q LW+ +
Sbjct: 301 DWCGD---RRSTSGYVFKFNDAAISWCTKKQPITALSSYEAEYIAGTFATFQALWLDSVI 471
Query: 1628 ED 1629
++
Sbjct: 472 KE 477
>BG586293 weakly similar to PIR|E84473|E84 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana, partial
(7%)
Length = 763
Score = 88.2 bits (217), Expect = 2e-17
Identities = 43/86 (50%), Positives = 60/86 (69%)
Frame = +2
Query: 1240 LIPKPFQKNIIGTKWVFRNKLNEKGEVTRNKARLVAQGYSQQEGIDYTETFAPVARLEAI 1299
L+ KP IG +W+++ K NE G + + KARLVA+GY +Q+GID+ E FAPV R+E I
Sbjct: 65 LVKKPTGVKPIGLRWIYKIKRNEDGTLIKYKARLVAKGYVKQQGIDFDEVFAPVVRIETI 244
Query: 1300 RLLLSYAINHGIILYQMDVKSAFLNG 1325
LLL+ A +G ++ +DVK AFLNG
Sbjct: 245 *LLLALAATNGC*IHHIDVKIAFLNG 322
>BE123913 weakly similar to GP|22093573|d polyprotein {Oryza sativa (japonica
cultivar-group)}, partial (8%)
Length = 503
Score = 82.0 bits (201), Expect = 2e-15
Identities = 46/125 (36%), Positives = 71/125 (56%), Gaps = 3/125 (2%)
Frame = +1
Query: 1360 QAPRAWYDRLSNFLIKNDFERGQVDTTLFGK---TLKKDILIVQIYVDDIIFGSTNASLC 1416
Q+PR W+DR + + K + + Q D +F K T+KK ILIV YVDDI +
Sbjct: 1 QSPRDWFDRFT*VVKKFGYIQCQTDHAMFIKHSSTVKKAILIV--YVDDIFLTGDHGK*I 174
Query: 1417 KEFSKLMQDEFEMSMMGELKFFLGIQINQSKEGVYVHQTKYTKELLKKFKLEDCKVMNTP 1476
K L+ +EFE+ +G LK+FLG+++ + K+G + Q KY +LLK+ ++ CK + P
Sbjct: 175 KRLKNLLAEEFEIKDLGNLKYFLGMEVARWKKGSSISQRKYVLDLLKETRMIGCKTIRDP 354
Query: 1477 MHPTC 1481
C
Sbjct: 355 YGCNC 369
Score = 53.5 bits (127), Expect = 7e-07
Identities = 25/56 (44%), Positives = 35/56 (61%)
Frame = +2
Query: 1469 DCKVMNTPMHPTCTLSKEDTGTVVDQKLYRGMIGSLLYLTASRPDILFSVCLCARF 1524
D K TPM T L D GT+VD+ Y+ ++G L+YL+ +RPDI F VC ++F
Sbjct: 332 DVKPSETPMDATVKLGTLDNGTLVDKGRYQRLVGKLIYLSHTRPDISFVVCTMSQF 499
>BG586273 weakly similar to PIR|F86470|F8 probable retroelement polyprotein
[imported] - Arabidopsis thaliana, partial (7%)
Length = 705
Score = 77.4 bits (189), Expect = 4e-14
Identities = 52/210 (24%), Positives = 95/210 (44%), Gaps = 8/210 (3%)
Frame = -2
Query: 997 SCYIQNRIYIRPMLEKTAYELFKGRRPNISYFHQFGCTCYILNTKDYLKKFDAKAQRGIF 1056
+CY+ NRI R + ++ +E+ R+P+++Y FGC CY+L + K +A++++ +F
Sbjct: 704 ACYLINRIPTRVLKDQAPFEVLNQRKPSLTYMRVFGCLCYVLVPGELRNKLEARSRKAMF 525
Query: 1057 LGYSERSKAYRVYNSETHCVEESIHVKFDDREPGNKTPEQSESNAGTTDSEDASESDQPS 1116
+GYS K Y+ Y+ E V S VKF + + Q + T+D
Sbjct: 524 IGYSTTQKGYKCYDPEARRVLVSRDVKFIEERGYYEEKNQEDLRDLTSDKAGVLRVILEG 345
Query: 1117 DSEKHSEVESRPEAEITPEAESNS---EAETSPVEQNENASEDVQDNTQQVI-----QPK 1168
K ++ +S + PE SN A+T ++ + + Q+N Q+ + +
Sbjct: 344 LGIKMNQDQSTRSRQ--PEESSNEPRRAAQTPHLDHEGGSEPETQENGQEGVGLSEEGEE 171
Query: 1169 FKHKSSHPEELIIGSKDSPRRTRSHFRQEE 1198
F S H E G ++ + Q+E
Sbjct: 170 FNSGSHHQGEQDQGDEEHHSEAQEPHIQDE 81
>BG644677 weakly similar to GP|7682800|gb| Hypothetical protein T15F17.l
{Arabidopsis thaliana}, partial (3%)
Length = 539
Score = 70.1 bits (170), Expect = 7e-12
Identities = 39/104 (37%), Positives = 57/104 (54%)
Frame = -3
Query: 1505 LYLTASRPDILFSVCLCARFQSDPRESHLTAVKRIFRYLKGTTNLGLLYRKSLDYKLIGF 1564
+ LT P+I FS+ L +R+ S P H +K I +YLKG ++GL Y K LIG+
Sbjct: 531 ILLTLQGPNITFSINLLSRYSSAPTMRH*NGIKHICKYLKGIIDMGLFYSKDCSPDLIGY 352
Query: 1565 CDADYAGDRIERKSTSGNCQFLGENLISWASKRQATIAMSTAEA 1608
+A Y D + +S +G G +ISW S + +TIA S+ A
Sbjct: 351 VNA*YLSDPHKARS*TGYIFTCGNTVISWRSTK*STIATSSNHA 220
>CB893680 weakly similar to GP|1167523|db ORF(AA 1-1338) {Nicotiana tabacum},
partial (7%)
Length = 780
Score = 62.0 bits (149), Expect = 2e-09
Identities = 38/96 (39%), Positives = 52/96 (53%)
Frame = -2
Query: 1290 FAPVARLEAIRLLLSYAINHGIILYQMDVKSAFLNGVIEEEVYVKQPPGFEDIKHPDHVY 1349
F P+ +L I LLS + L +DVK+AFL G + E++Y+ QP GF + V
Sbjct: 554 FVPIVKLNTIMFLLSIVAIENLYLE*LDVKTAFLRGDLVEDIYMHQPEGF-S*EVGKMVG 378
Query: 1350 KLKKSLYGLKQAPRAWYDRLSNFLIKNDFERGQVDT 1385
KLKKS+YGLKQ PR L + F R ++ T
Sbjct: 377 KLKKSMYGLKQGPRQCI*SLKALCTRKGF-RSEIST 273
>AJ499215 weakly similar to GP|6642775|gb| gag-pol polyprotein {Vitis
vinifera}, partial (18%)
Length = 567
Score = 59.3 bits (142), Expect = 1e-08
Identities = 32/105 (30%), Positives = 53/105 (50%), Gaps = 4/105 (3%)
Frame = +3
Query: 665 REKQRSWYLDSGCSRHMTGEKALFLTLTMKDGGEVKFGGNQTGKIIGTGTIGNSSIS--- 721
++ + W +DSGC+ HMT ++ LF L +V+ ++ G GT+ S S
Sbjct: 90 KQPSKYWLIDSGCTHHMTHDRDLFKELNKSTISKVRMLNGAHIEVEGIGTVLVKSHSGYK 269
Query: 722 -INNVWLVDGLKHNLLSISQFCDNGYDVMFSKTNCTLVNKNDKSI 765
I+NV L +LLS+ Q GY V+F C + ++N+K +
Sbjct: 270 QISNVLYAPKLNQSLLSVPQLLTKGYKVLFEHEKCVIKDQNNKEV 404
>BG587174 similar to PIR|A47759|A4775 retrovirus-related reverse transcriptase
homolog - rape retrotransposon copia-like (fragment),
partial (84%)
Length = 249
Score = 57.8 bits (138), Expect = 4e-08
Identities = 25/46 (54%), Positives = 33/46 (71%)
Frame = -1
Query: 1327 IEEEVYVKQPPGFEDIKHPDHVYKLKKSLYGLKQAPRAWYDRLSNF 1372
+EE++Y+ QP GF DHV KL+KSLYGLKQ+PR WY R ++
Sbjct: 246 LEEKIYMTQPEGFLFPGKEDHVCKLRKSLYGLKQSPRQWYKRFDSY 109
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.314 0.131 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,824,662
Number of Sequences: 36976
Number of extensions: 664254
Number of successful extensions: 3180
Number of sequences better than 10.0: 108
Number of HSP's better than 10.0 without gapping: 3042
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3149
length of query: 1716
length of database: 9,014,727
effective HSP length: 110
effective length of query: 1606
effective length of database: 4,947,367
effective search space: 7945471402
effective search space used: 7945471402
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 65 (29.6 bits)
Medicago: description of AC149496.5