Medicago
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC149496.4 - phase: 0 
         (475 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

CA921522                                                              262  2e-70
BE203370                                                              193  1e-49
AW736370                                                              169  2e-42
BQ123351                                                              110  9e-25
AL366606                                                               75  5e-14
TC92100 similar to GP|15290106|dbj|BAB63798. contains EST D24276...    37  0.022
TC83868                                                                31  0.91
TC87535 similar to GP|19310542|gb|AAL85004.1 unknown protein {Ar...    31  1.2
TC78289 similar to GP|15451044|gb|AAK96793.1 Unknown protein {Ar...    31  1.2
BQ751808 similar to GP|7769858|gb|A F12M16.20 {Arabidopsis thali...    30  2.6
AW686183 similar to GP|20197841|gb| hypothetical protein {Arabid...    29  4.5
TC88896 weakly similar to GP|6728968|gb|AAF26966.1| unknown prot...    28  5.9

>CA921522 
          Length = 767

 Score =  262 bits (669), Expect = 2e-70
 Identities = 128/253 (50%), Positives = 165/253 (64%)
 Frame = +3

Query: 117 SDLVHPHFTIKNNLQGLTAKFLYQKASDFVKAKKTNAFESIFTLLIYGLFLFPNMDNFVD 176
           +D V  H   +    G +  FLY++ + F K     AF SI  LL+YGL LFP++DNFVD
Sbjct: 6   TDEVKTHLITRGKFLGFSTDFLYERTTFFDKMGVAYAFNSILALLVYGLVLFPSLDNFVD 185

Query: 177 LNAIKIFLAKNPVPTLLANTYHSIHHRNIREGGLIVCCAPLLYRWYASHLTKSVFSKENS 236
           + AI+IFL++NPVPTLL +TY SIH R     G I+CCA LLYRW  SHL ++     N 
Sbjct: 186 IKAIQIFLSRNPVPTLLGDTYLSIHRRTQAGRGTILCCAQLLYRWITSHLPRTPRFTTNP 365

Query: 237 GKASWSERIMPLTPADIVWVHAGTNTAGIIGSCGEFENVPLIGTCGGITYNPTLAMRQYG 296
               WS+R+M LTPA++VW     +   II SCG+F NVPL+G  GGI+YNPTLA  Q+G
Sbjct: 366 ENLLWSKRLMSLTPAEVVWYDRVYDKGTIIDSCGKFANVPLLGMEGGISYNPTLARHQFG 545

Query: 297 YPMKGRPDSLSLSNEFYLNKNDHTNLRMRFVQAWHSIRKFDGIQLGRKQSFAHESYTQWV 356
           YPM+ +P S+ L N +YLN +D T +R   V+AWH+IR+ D  QLG+K      SYTQWV
Sbjct: 546 YPMERKPLSIYLENVYYLNADDSTGMREHVVRAWHTIRRRDKDQLGKKTGAISSSYTQWV 725

Query: 357 IDRATAFGMPYTL 369
           IDRA   GMPY +
Sbjct: 726 IDRAVQIGMPYKI 764


>BE203370 
          Length = 454

 Score =  193 bits (491), Expect = 1e-49
 Identities = 98/152 (64%), Positives = 113/152 (73%)
 Frame = +1

Query: 66  HCFTFPDYQLVPTLEEYSFWVGLPVSEGEPFNGLEPSPKNATIAEALHLKPSDLVHPHFT 125
           HCFTFPDYQL PTLEEYS+ VG PV +  PF G EP PK ATIA+ALHL+ S L+    T
Sbjct: 1   HCFTFPDYQLAPTLEEYSYLVG*PVLDKVPFTGFEPIPKAATIADALHLETS-LIKAKLT 177

Query: 126 IKNNLQGLTAKFLYQKASDFVKAKKTNAFESIFTLLIYGLFLFPNMDNFVDLNAIKIFLA 185
           IK NL  L  KFLYQ+ASDF K    +AF SI  LLIYGL LFPN+DN+VD++AI++FL 
Sbjct: 178 IKGNLPSLPTKFLYQQASDFAKVDNVDAFYSILALLIYGLVLFPNVDNYVDIHAIQMFLT 357

Query: 186 KNPVPTLLANTYHSIHHRNIREGGLIVCCAPL 217
           KNPVPTLLA+ YHSIH RN    G I+ CAPL
Sbjct: 358 KNPVPTLLADMYHSIHDRNQVGRGAILGCAPL 453


>AW736370 
          Length = 488

 Score =  169 bits (429), Expect = 2e-42
 Identities = 83/98 (84%), Positives = 88/98 (89%)
 Frame = -2

Query: 378 PEIPLPLLPQTKEEYQERLAEAEREIHMWKRECQKKDKDYETVMGLLEQEAYDSRQKDVI 437
           P  PLP+   T++EYQERL EAEREIH WKRE QKKD+DYETVMGLLEQEAYDSR KDVI
Sbjct: 478 PAPPLPMTFDTEKEYQERLTEAEREIHRWKREYQKKDQDYETVMGLLEQEAYDSR*KDVI 299

Query: 438 IAKLNERIKEKDAALDRIPGRKKKRMDLFDGPHSDFED 475
           IAKLNERIKE DAALDRIPGRKK+RMDLFDGPHSDFED
Sbjct: 298 IAKLNERIKENDAALDRIPGRKKRRMDLFDGPHSDFED 185


>BQ123351 
          Length = 725

 Score =  110 bits (276), Expect = 9e-25
 Identities = 60/153 (39%), Positives = 92/153 (59%), Gaps = 2/153 (1%)
 Frame = +2

Query: 325 RFVQAWHSIRKFDGIQLGRKQSFAHESYTQWVIDRATAFGMPYTLPRFLSSTVPEIPLPL 384
           +F+QAW ++ K +  QLGR+    +ESYT+WVIDRA   G+P+ L R  SST     LP+
Sbjct: 5   KFIQAWRAVHKREKGQLGRRS*LVYESYTKWVIDRAAKNGIPFPLQRLPSSTTLSPSLPM 184

Query: 385 LPQTKEEYQERLAEAEREIHMWKRECQKKDKDYETVMGLLEQEAYDSRQKDVIIAKLNER 444
             +TKEE Q  LAE  RE   W+    + + +  T+ G +EQ+ ++  +    + + ++ 
Sbjct: 185 TSKTKEEAQYLLAEMTREKDTWRIRYMEAESEIGTLRGQVEQKDHELLKMRQQMIERDDL 364

Query: 445 IKEKDAALDRIPGRKKK--RMDLFDGPHSDFED 475
           ++EKD  L +   +K++   MDLFDGP SDFED
Sbjct: 365 LQEKDKLLKKHITKKQRMDSMDLFDGPDSDFED 463


>AL366606 
          Length = 393

 Score = 75.1 bits (183), Expect = 5e-14
 Identities = 34/57 (59%), Positives = 45/57 (78%)
 Frame = -1

Query: 156 SIFTLLIYGLFLFPNMDNFVDLNAIKIFLAKNPVPTLLANTYHSIHHRNIREGGLIV 212
           +I   L  GL LFPN+DNFVD+NAI++F +KNPVPTLLA+TYH+IH R ++  G I+
Sbjct: 381 AIXLCLSTGLILFPNLDNFVDMNAIEVFHSKNPVPTLLADTYHAIHDRTLKGRGYIL 211


>TC92100 similar to GP|15290106|dbj|BAB63798. contains EST
           D24276(R1622)~similar to Arabidopsis thaliana chromosome
           5  K16F4.11~unknown protein, partial (71%)
          Length = 1083

 Score = 36.6 bits (83), Expect = 0.022
 Identities = 26/80 (32%), Positives = 41/80 (50%)
 Frame = +2

Query: 348 AHESYTQWVIDRATAFGMPYTLPRFLSSTVPEIPLPLLPQTKEEYQERLAEAEREIHMWK 407
           A +S    + +RA AF     L   +   + EI L  L   + E   ++AEAERE H  K
Sbjct: 767 AVQSIKATIAERANAFRRQCELAETMK--LKEINLDKLMLIRSE---KVAEAEREYHELK 931

Query: 408 RECQKKDKDYETVMGLLEQE 427
            E ++  K +ET++ L+ +E
Sbjct: 932 AESEQATKTFETIVKLMSEE 991


>TC83868 
          Length = 828

 Score = 31.2 bits (69), Expect = 0.91
 Identities = 20/85 (23%), Positives = 38/85 (44%)
 Frame = +3

Query: 378 PEIPLPLLPQTKEEYQERLAEAEREIHMWKRECQKKDKDYETVMGLLEQEAYDSRQKDVI 437
           PE+      +  E   +RL E+E EI   + + +KKD   +    +      +       
Sbjct: 177 PEVEKDAYLKQIEALNQRLKESELEIESLREQLRKKDLQVDDSKEVKVDHEIEKDAHLKE 356

Query: 438 IAKLNERIKEKDAALDRIPGRKKKR 462
           I  LN+R+KE +A ++    + +K+
Sbjct: 357 IEALNQRLKESEAEIESSREQLRKK 431


>TC87535 similar to GP|19310542|gb|AAL85004.1 unknown protein {Arabidopsis
           thaliana}, partial (86%)
          Length = 893

 Score = 30.8 bits (68), Expect = 1.2
 Identities = 15/57 (26%), Positives = 31/57 (54%)
 Frame = +1

Query: 393 QERLAEAEREIHMWKRECQKKDKDYETVMGLLEQEAYDSRQKDVIIAKLNERIKEKD 449
           ++R+    +E+      CQKK+K+Y+  +    ++   +R+K  +I KL E + E +
Sbjct: 445 RKRIDSVNKELKPLGHTCQKKEKEYKDALEAFNEK---NREKVQLITKLMELVGESE 606


>TC78289 similar to GP|15451044|gb|AAK96793.1 Unknown protein {Arabidopsis
           thaliana}, partial (15%)
          Length = 1020

 Score = 30.8 bits (68), Expect = 1.2
 Identities = 15/43 (34%), Positives = 28/43 (64%)
 Frame = +1

Query: 391 EYQERLAEAEREIHMWKRECQKKDKDYETVMGLLEQEAYDSRQ 433
           ++QE+L E ER IH  +R+ ++KD++   +   L+ EA  ++Q
Sbjct: 613 KFQEQLCERERAIHELERKMEEKDRELHKIK--LDNEAAWAKQ 735


>BQ751808 similar to GP|7769858|gb|A F12M16.20 {Arabidopsis thaliana},
           partial (2%)
          Length = 661

 Score = 29.6 bits (65), Expect = 2.6
 Identities = 19/39 (48%), Positives = 22/39 (55%)
 Frame = +1

Query: 361 TAFGMPYTLPRFLSSTVPEIPLPLLPQTKEEYQERLAEA 399
           T  G P T PR  SSTVP  P P   Q +  YQ+RL+ A
Sbjct: 229 TPLGPPQTGPR-QSSTVPA-PAPSFAQPQSPYQQRLSAA 339


>AW686183 similar to GP|20197841|gb| hypothetical protein {Arabidopsis
           thaliana}, partial (31%)
          Length = 655

 Score = 28.9 bits (63), Expect = 4.5
 Identities = 23/95 (24%), Positives = 40/95 (41%), Gaps = 4/95 (4%)
 Frame = +3

Query: 137 FLYQKASDFVKAKKTNAFESIFT-LLIYGLFLFPNMDNFVDLN---AIKIFLAKNPVPTL 192
           FLY K   F+     + +  I   LL  G+F FP+   F+ ++    + IF+  + +   
Sbjct: 150 FLYPKYPYFINRNNFHIYGKIQQ*LLFLGIFFFPSSSLFIHVHPFLCVSIFMV-HKL*VR 326

Query: 193 LANTYHSIHHRNIREGGLIVCCAPLLYRWYASHLT 227
           +    +S     +    +IV C  L  +W   H T
Sbjct: 327 VRGQVYSGEDFVVPCATIIVACCSLSLKWRIVHFT 431


>TC88896 weakly similar to GP|6728968|gb|AAF26966.1| unknown protein
           {Arabidopsis thaliana}, partial (27%)
          Length = 1097

 Score = 28.5 bits (62), Expect = 5.9
 Identities = 17/71 (23%), Positives = 34/71 (46%), Gaps = 6/71 (8%)
 Frame = +2

Query: 385 LPQTKEEYQERLAEAEREIHMWKRECQKKDKDYETVMGLLEQE------AYDSRQKDVII 438
           L  +KE+Y+  L +A  EI   K + +   + YE+++     E      + ++ + D++ 
Sbjct: 722 LEASKEKYESMLNDAHHEIEDLKSDLEASKEKYESMLNDAHHEIDVLTSSIENSKMDILN 901

Query: 439 AKLNERIKEKD 449
           +K     KE D
Sbjct: 902 SKAEWEQKEHD 934


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.321    0.138    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,767,578
Number of Sequences: 36976
Number of extensions: 240811
Number of successful extensions: 1230
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1226
length of query: 475
length of database: 9,014,727
effective HSP length: 100
effective length of query: 375
effective length of database: 5,317,127
effective search space: 1993922625
effective search space used: 1993922625
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)


Medicago: description of AC149496.4