BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC149491.7 - phase: 0
(114 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BQ144095 weakly similar to GP|12842949|dbj| data source:SPTR so... 43 2e-05
TC85352 weakly similar to GP|9279599|dbj|BAB01057.1 contains sim... 38 5e-04
BQ137189 weakly similar to PIR|H84644|H846 hypothetical protein ... 27 1.5
TC82626 weakly similar to PIR|G96798|G96798 hypothetical protein... 27 1.5
BI262796 weakly similar to GP|10800974|emb Ga20 oxidase {Solanum... 26 2.0
TC81217 similar to PIR|T07142|T07142 beta-glucan-elicitor recept... 25 3.4
TC88711 similar to PIR|T07614|T07614 homeobox-leucine zipper pro... 25 3.4
BQ137752 similar to GP|10140647|gb| putative pectin acetylestera... 25 3.4
TC80338 weakly similar to GP|20127018|gb|AAM10936.1 putative bHL... 25 3.4
AW256617 25 4.4
TC87190 amt2-like protein [Medicago truncatula] 25 4.4
TC93233 similar to GP|19888310|gb|AAM02817.1 Topoisomerase IA {M... 25 4.4
TC77172 similar to GP|20466472|gb|AAM20553.1 putative protein {A... 25 5.8
TC78320 weakly similar to GP|8885553|dbj|BAA97483.1 ripening-rel... 25 5.8
TC82022 similar to GP|6648214|gb|AAF21212.1| unknown protein {Ar... 25 5.8
BQ150940 25 5.8
TC88093 homologue to PIR|D84431|D84431 probable endosomal protei... 24 7.6
TC92590 24 7.6
TC88987 weakly similar to PIR|T00552|T00552 lysophospholipase ho... 24 7.6
TC78654 similar to GP|9758185|dbj|BAB08570.1 gene_id:MTE17.25~pi... 24 7.6
>BQ144095 weakly similar to GP|12842949|dbj| data source:SPTR source
key:Q9Y2Y1 evidence:ISS~homolog to PUTATIVE
DNA-DIRECTED RNA POLYMERASE, partial (39%)
Length = 615
Score = 43.1 bits (100), Expect = 2e-05
Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 10/83 (12%)
Frame = +2
Query: 42 CVYRNEIHHSVA-ERTQVLQDVAADPTLP-------RTKA-VRCVQCNHGEAVF-FQATA 91
C Y I V +R Q+L DP + + KA V C C H +A + Q T
Sbjct: 197 CPYICRIEKGVKIKRRQMLVRKGIDPIISHHEINKNKPKADVPCPNCRHPQASYHMQQTR 376
Query: 92 RGEEGMTLFFVCCNPNCGHRWRD 114
+E T+F+ C N CGH+W++
Sbjct: 377 SADEPATIFYECLNEKCGHKWKE 445
>TC85352 weakly similar to GP|9279599|dbj|BAB01057.1 contains similarity to
transcription-associated zinc ribbon
protein~gene_id:MPE11.11, partial (88%)
Length = 899
Score = 38.1 bits (87), Expect = 5e-04
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +1
Query: 76 CVQCNHGEAVFFQATAR-GEEGMTLFFVCCNPNCGHRWRD 114
C +C HGEA F+ R +EG T F+ C CGH++++
Sbjct: 436 CEKCGHGEAAFYTRQMRSADEGQTTFYTC--TRCGHQFQE 549
>BQ137189 weakly similar to PIR|H84644|H846 hypothetical protein At2g25150
[imported] - Arabidopsis thaliana, partial (6%)
Length = 957
Score = 26.6 bits (57), Expect = 1.5
Identities = 9/19 (47%), Positives = 12/19 (62%)
Frame = +3
Query: 94 EEGMTLFFVCCNPNCGHRW 112
E+G +FF+CC N RW
Sbjct: 273 EDGKLIFFMCCRTNTILRW 329
>TC82626 weakly similar to PIR|G96798|G96798 hypothetical protein F22K20.8
[imported] - Arabidopsis thaliana, partial (14%)
Length = 660
Score = 26.6 bits (57), Expect = 1.5
Identities = 13/51 (25%), Positives = 25/51 (48%)
Frame = -1
Query: 1 MSTMKFCRECNNILYPKEDREQKILLYACRNCDHQEAADNFCVYRNEIHHS 51
M +K ++ YP +++K+ L + RN DH + + +F + H S
Sbjct: 558 MVLVKLLTPFSSSFYP*IPKKKKVTLLSGRNLDHDQFSHHFSSHVPSYHQS 406
>BI262796 weakly similar to GP|10800974|emb Ga20 oxidase {Solanum tuberosum},
partial (8%)
Length = 409
Score = 26.2 bits (56), Expect = 2.0
Identities = 16/48 (33%), Positives = 20/48 (41%)
Frame = -2
Query: 24 ILLYACRNCDHQEAADNFCVYRNEIHHSVAERTQVLQDVAADPTLPRT 71
+ LY R DNFC + H + E Q+L A TLP T
Sbjct: 222 LFLYG*RLLQET*RNDNFCTWEGVHHLLIHELAQLLSLGLARKTLPST 79
>TC81217 similar to PIR|T07142|T07142 beta-glucan-elicitor receptor -
soybean, partial (25%)
Length = 839
Score = 25.4 bits (54), Expect = 3.4
Identities = 14/38 (36%), Positives = 19/38 (49%)
Frame = -1
Query: 13 ILYPKEDREQKILLYACRNCDHQEAADNFCVYRNEIHH 50
I YP DR + LL N + +D+ C +RN HH
Sbjct: 245 ISYPMLDRSLQALLLRKENILSE--SDDHCKFRNRNHH 138
>TC88711 similar to PIR|T07614|T07614 homeobox-leucine zipper protein
homolog h1 - soybean, partial (73%)
Length = 1238
Score = 25.4 bits (54), Expect = 3.4
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +1
Query: 26 LYACRNCDHQEAADNFCVYRNEIHHSVAE 54
L C +C+ N CV + HHS+A+
Sbjct: 814 LTMCPSCERVAVPSNACVDASNRHHSMAQ 900
>BQ137752 similar to GP|10140647|gb| putative pectin acetylesterase {Oryza
sativa (japonica cultivar-group)}, partial (5%)
Length = 645
Score = 25.4 bits (54), Expect = 3.4
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +1
Query: 99 LFFVCCNPNCGHRWR 113
LFFV P C HRW+
Sbjct: 589 LFFVRARPLCPHRWK 633
>TC80338 weakly similar to GP|20127018|gb|AAM10936.1 putative bHLH
transcription factor {Arabidopsis thaliana}, partial
(15%)
Length = 1128
Score = 25.4 bits (54), Expect = 3.4
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -3
Query: 31 NCDHQEAADNFCVYRNEIHHSVAERTQVLQ 60
NC H + +FC+Y+ IH V + VL+
Sbjct: 517 NCTHLNSLWSFCLYKCWIHLLVLALSHVLE 428
>AW256617
Length = 718
Score = 25.0 bits (53), Expect = 4.4
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +3
Query: 68 LPRTKAVRCVQCNHGEAVFF 87
+PRT V C+ CN G +FF
Sbjct: 426 IPRTG*VWCLVCNCGTEIFF 485
>TC87190 amt2-like protein [Medicago truncatula]
Length = 1912
Score = 25.0 bits (53), Expect = 4.4
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -1
Query: 76 CVQCNHGEAVFFQATARGEEGMTLFFVCCN 105
C C HG ++F ++ +E +T F VC N
Sbjct: 97 CW*CCHGSSLFKSCSSSFDEILTGFSVCTN 8
>TC93233 similar to GP|19888310|gb|AAM02817.1 Topoisomerase IA {Methanopyrus
kandleri AV19}, partial (3%)
Length = 781
Score = 25.0 bits (53), Expect = 4.4
Identities = 8/12 (66%), Positives = 9/12 (74%)
Frame = +3
Query: 103 CCNPNCGHRWRD 114
C NP CG RWR+
Sbjct: 615 CGNPRCGLRWRN 650
>TC77172 similar to GP|20466472|gb|AAM20553.1 putative protein {Arabidopsis
thaliana}, partial (78%)
Length = 4130
Score = 24.6 bits (52), Expect = 5.8
Identities = 16/51 (31%), Positives = 25/51 (48%), Gaps = 6/51 (11%)
Frame = -3
Query: 4 MKFCRECNNILYP-----KEDREQKILLYACRNCDHQE-AADNFCVYRNEI 48
+ FCR+CN++L K R QK + C C Q NF ++ N++
Sbjct: 2460 LSFCRQCNSVLQNHKFS*KFFRTQKF*ILHC--CGQQPLTC*NFSIFLNKL 2314
>TC78320 weakly similar to GP|8885553|dbj|BAA97483.1 ripening-related
protein-like; hydrolase-like {Arabidopsis thaliana},
partial (85%)
Length = 1466
Score = 24.6 bits (52), Expect = 5.8
Identities = 13/47 (27%), Positives = 25/47 (52%)
Frame = -2
Query: 32 CDHQEAADNFCVYRNEIHHSVAERTQVLQDVAADPTLPRTKAVRCVQ 78
C + ADN+C++++ I A +++ A+ + R AVR +Q
Sbjct: 901 CIFKRFADNWCLWKHRIRIRTACVLTEIKNFTANFFIRRDDAVRGIQ 761
>TC82022 similar to GP|6648214|gb|AAF21212.1| unknown protein {Arabidopsis
thaliana}, partial (24%)
Length = 1153
Score = 24.6 bits (52), Expect = 5.8
Identities = 9/30 (30%), Positives = 18/30 (60%)
Frame = +2
Query: 6 FCRECNNILYPKEDREQKILLYACRNCDHQ 35
FCR CN + ++ +K+L +C++C +
Sbjct: 587 FCRMCNRVENEGSEKAKKML--SCKSCSKE 670
>BQ150940
Length = 498
Score = 24.6 bits (52), Expect = 5.8
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +2
Query: 67 TLPRTKAVRCVQCNHGEAVFFQATA 91
T+P +RCV+C H E TA
Sbjct: 149 TVPSLS*IRCVRCTHAEHASCTMTA 223
>TC88093 homologue to PIR|D84431|D84431 probable endosomal protein [imported]
- Arabidopsis thaliana, partial (55%)
Length = 1220
Score = 24.3 bits (51), Expect = 7.6
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -1
Query: 1 MSTMKFCRECNNILYPKEDREQKILLYACRNC 32
+S KF N +L+ + ++LLY+ +NC
Sbjct: 1145 LSPKKFLL*SNKLLWKLQTHPTQLLLYSTQNC 1050
>TC92590
Length = 414
Score = 24.3 bits (51), Expect = 7.6
Identities = 14/47 (29%), Positives = 20/47 (41%)
Frame = -2
Query: 25 LLYACRNCDHQEAADNFCVYRNEIHHSVAERTQVLQDVAADPTLPRT 71
L R + +DNF + +H S+ E Q+ A TLP T
Sbjct: 179 LFRGSRILQRNQKSDNFYTFEGVLHLSIPE*DQLSCPSLAHKTLPWT 39
>TC88987 weakly similar to PIR|T00552|T00552 lysophospholipase homolog
F12L6.8 - Arabidopsis thaliana, partial (87%)
Length = 1283
Score = 24.3 bits (51), Expect = 7.6
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = -3
Query: 81 HGEAVFFQATARGEEGMTLFFVCCNPNC 108
HG+A F + E FVC NP C
Sbjct: 357 HGDAAFHGISMTHEY*CFWIFVCRNPTC 274
>TC78654 similar to GP|9758185|dbj|BAB08570.1
gene_id:MTE17.25~pir||T07080~similar to unknown protein
{Arabidopsis thaliana}, partial (51%)
Length = 2008
Score = 24.3 bits (51), Expect = 7.6
Identities = 10/34 (29%), Positives = 17/34 (49%)
Frame = +1
Query: 28 ACRNCDHQEAADNFCVYRNEIHHSVAERTQVLQD 61
AC +C++ AAD Y +H A +V+ +
Sbjct: 1312 ACCDCEYARAADGSAGYS*HVHEKYAAIYRVISE 1413
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.326 0.137 0.457
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,218,773
Number of Sequences: 36976
Number of extensions: 75041
Number of successful extensions: 460
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 460
length of query: 114
length of database: 9,014,727
effective HSP length: 90
effective length of query: 24
effective length of database: 5,686,887
effective search space: 136485288
effective search space used: 136485288
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 50 (23.9 bits)
Medicago: description of AC149491.7