BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC149490.13 + phase: 0
(227 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BQ147080 similar to GP|9757920|dbj| gb|AAF07370.1~gene_id:MMN10.... 345 8e-96
CA989797 similar to GP|9758047|dbj| gb|AAF07370.1~gene_id:MYC6.9... 112 2e-25
TC86306 similar to PIR|T02891|T02891 hypothetical protein T13J8.... 76 9e-15
TC79771 similar to GP|20466574|gb|AAM20604.1 putative protein {A... 74 3e-14
TC88293 similar to GP|16323057|gb|AAL15263.1 AT5g57660/MRI1_1 {A... 60 9e-10
TC87753 similar to GP|4091806|gb|AAC99310.1| CONSTANS-like prote... 59 2e-09
TC86982 similar to GP|10946337|gb|AAG24863.1 CONSTANS-like prote... 57 8e-09
TC90874 similar to PIR|T52076|T52076 ABI3-interacting protein ai... 55 3e-08
TC78669 similar to GP|4091806|gb|AAC99310.1| CONSTANS-like prote... 54 6e-08
TC82857 similar to PIR|T52076|T52076 ABI3-interacting protein ai... 50 5e-07
TC88177 homologue to GP|10281004|dbj|BAB13742. pseudo-response r... 50 5e-07
TC92294 similar to GP|10281006|dbj|BAB13743. pseudo-response reg... 47 6e-06
AL383316 homologue to GP|13702811|gb| putative zinc finger prote... 47 6e-06
AW560988 similar to PIR|JE0113|JE01 zinc-finger protein S3574 [i... 42 3e-04
TC86792 similar to GP|10281004|dbj|BAB13742. pseudo-response reg... 41 3e-04
BI308204 similar to PIR|JC7336|JC7 zinc-finger protein - Arabido... 39 0.002
BE942112 similar to PIR|JE0113|JE01 zinc-finger protein S3574 [i... 39 0.002
TC76731 similar to GP|13937151|gb|AAK50069.1 AT5g57180/MUL3_13 {... 39 0.002
TC93306 homologue to GP|10281006|dbj|BAB13743. pseudo-response r... 38 0.003
TC88671 similar to PIR|JC7336|JC7336 zinc-finger protein - Arabi... 35 0.018
>BQ147080 similar to GP|9757920|dbj| gb|AAF07370.1~gene_id:MMN10.24~similar
to unknown protein {Arabidopsis thaliana}, partial (24%)
Length = 665
Score = 345 bits (885), Expect = 8e-96
Identities = 168/169 (99%), Positives = 168/169 (99%)
Frame = +2
Query: 1 MEQNNSIPDFTELDSFQDTLSQLNNSELSSGYSSYGGSPSPSTPILMQRSISSHSLQYNN 60
MEQNNSIPDFTELDSFQDTLSQLNNSELSSGYSSYGGSPSPSTPILMQRSISSHSLQYNN
Sbjct: 155 MEQNNSIPDFTELDSFQDTLSQLNNSELSSGYSSYGGSPSPSTPILMQRSISSHSLQYNN 334
Query: 61 GTHHYPLSAFFADLLDSDDAPVRKVCSTGDLQRINGMQHNHHHHVDSPLSSESSMIIEGM 120
GTHHYPLSAFFADLLDSDDAPVRKVCSTGDLQRINGMQHNHHHHVDSPLSSESSMIIEGM
Sbjct: 335 GTHHYPLSAFFADLLDSDDAPVRKVCSTGDLQRINGMQHNHHHHVDSPLSSESSMIIEGM 514
Query: 121 SRVCPYSPEEKKVRIERYRIKRNQRNFNKKIKYVCRKTLADRRPRIRGR 169
SRVCPYSPEEKKVRIERYRIKRNQRNFNKKIKYVCRKTLADRRPRIR R
Sbjct: 515 SRVCPYSPEEKKVRIERYRIKRNQRNFNKKIKYVCRKTLADRRPRIRXR 661
>CA989797 similar to GP|9758047|dbj| gb|AAF07370.1~gene_id:MYC6.9~similar to
unknown protein {Arabidopsis thaliana}, partial (31%)
Length = 513
Score = 112 bits (279), Expect = 2e-25
Identities = 72/154 (46%), Positives = 88/154 (56%), Gaps = 7/154 (4%)
Frame = +2
Query: 34 SYGGSPSPSTPILMQRSISSHSLQYNNG----THHYPL---SAFFADLLDSDDAPVRKVC 86
SY G + S MQRS SS+S + THH L S F L S + +R+VC
Sbjct: 62 SYSGDENVSK--YMQRSFSSNSFEKKPSFLFQTHHDNLVDSSKFQRHDLSSPENSLRRVC 235
Query: 87 STGDLQRINGMQHNHHHHVDSPLSSESSMIIEGMSRVCPYSPEEKKVRIERYRIKRNQRN 146
STGDLQ M+ N+ + L E + +V YS EE+K +I +YR KR QRN
Sbjct: 236 STGDLQN---MKENNMSPTEGNLQEEQNF------KVGRYSAEERKEKISKYRAKRTQRN 388
Query: 147 FNKKIKYVCRKTLADRRPRIRGRFARNDEIDKKP 180
FNK IKY CRKTLAD RPR+RGRFARNDE + P
Sbjct: 389 FNKTIKYACRKTLADNRPRVRGRFARNDEPTEIP 490
>TC86306 similar to PIR|T02891|T02891 hypothetical protein T13J8.10 -
Arabidopsis thaliana, partial (54%)
Length = 1425
Score = 76.3 bits (186), Expect = 9e-15
Identities = 47/143 (32%), Positives = 74/143 (50%), Gaps = 4/143 (2%)
Frame = +1
Query: 41 PSTPILMQRSISSHSLQYNNGTHHYPLSAFFADLLDSDDAPV---RKVCSTGDLQRI-NG 96
P +L+ +S+SS +L + H + F D D V R+ S GD++ + NG
Sbjct: 604 PIPDVLLSKSVSSGNLSSMDWMHGPAMKPAFLDFPGIDFNAVYGMRRAFSEGDIKTLGNG 783
Query: 97 MQHNHHHHVDSPLSSESSMIIEGMSRVCPYSPEEKKVRIERYRIKRNQRNFNKKIKYVCR 156
++ P + + E+++ ++ RYR K+ +RNF +KIKY CR
Sbjct: 784 NMSVGQSTLERPFLLSNC------------TSEQRQEKLSRYRNKKTRRNFGRKIKYACR 927
Query: 157 KTLADRRPRIRGRFARNDEIDKK 179
K LAD +PRIRGRFA+ +E+D K
Sbjct: 928 KALADSQPRIRGRFAKTEELDVK 996
>TC79771 similar to GP|20466574|gb|AAM20604.1 putative protein {Arabidopsis
thaliana}, partial (30%)
Length = 1431
Score = 74.3 bits (181), Expect = 3e-14
Identities = 52/144 (36%), Positives = 74/144 (51%), Gaps = 4/144 (2%)
Frame = +1
Query: 39 PSPSTPILMQRSISSHSLQYNNGTH-HYPLSAFFADLLDSDDAPV---RKVCSTGDLQRI 94
P P P+L+ +S+SS SL + H + F + D V R+ S GD++
Sbjct: 640 PLPDMPLLL-KSVSSGSLSSMDWMHGSAAMKPAFLGISGIDFDAVYGMRRSFSEGDIKTF 816
Query: 95 NGMQHNHHHHVDSPLSSESSMIIEGMSRVCPYSPEEKKVRIERYRIKRNQRNFNKKIKYV 154
N V SP +E S EE+ ++ RYR K+ +RNF +KIKY
Sbjct: 817 GNANMNV---VQSP--------VERPFFTSNCSSEERLQKLSRYRNKKTKRNFGRKIKYA 963
Query: 155 CRKTLADRRPRIRGRFARNDEIDK 178
CRK LAD +PR+RGRFA+N+E D+
Sbjct: 964 CRKALADSQPRVRGRFAKNEETDQ 1035
>TC88293 similar to GP|16323057|gb|AAL15263.1 AT5g57660/MRI1_1 {Arabidopsis
thaliana}, partial (30%)
Length = 1454
Score = 59.7 bits (143), Expect = 9e-10
Identities = 28/67 (41%), Positives = 43/67 (63%)
Frame = +2
Query: 111 SESSMIIEGMSRVCPYSPEEKKVRIERYRIKRNQRNFNKKIKYVCRKTLADRRPRIRGRF 170
+ S+ ++G +++C +++ R+ RYR KR R F K I+Y RK A+ RPRI+GRF
Sbjct: 629 NSSNQGVQGATQLCGM---DREARVMRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRF 799
Query: 171 ARNDEID 177
A+ EID
Sbjct: 800 AKRTEID 820
>TC87753 similar to GP|4091806|gb|AAC99310.1| CONSTANS-like protein 2 {Malus
x domestica}, partial (57%)
Length = 1193
Score = 58.9 bits (141), Expect = 2e-09
Identities = 27/64 (42%), Positives = 39/64 (60%)
Frame = +2
Query: 120 MSRVCPYSPEEKKVRIERYRIKRNQRNFNKKIKYVCRKTLADRRPRIRGRFARNDEIDKK 179
M+ P + E++ R+ RYR KR R F K I+Y RK A+ RPRI+GRFA+ +++
Sbjct: 794 MTVAVPMTAVEREARVMRYREKRKNRRFEKTIRYASRKAYAETRPRIKGRFAKRSDLNMN 973
Query: 180 PIVE 183
I E
Sbjct: 974 LIAE 985
>TC86982 similar to GP|10946337|gb|AAG24863.1 CONSTANS-like protein {Ipomoea
nil}, partial (54%)
Length = 1643
Score = 56.6 bits (135), Expect = 8e-09
Identities = 23/52 (44%), Positives = 36/52 (69%)
Frame = +1
Query: 126 YSPEEKKVRIERYRIKRNQRNFNKKIKYVCRKTLADRRPRIRGRFARNDEID 177
+SP +++ R+ RYR K+ R F K I+Y RK A+ RPRI+GRFA+ +++
Sbjct: 1033 FSPMDREARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRTDVE 1188
>TC90874 similar to PIR|T52076|T52076 ABI3-interacting protein aip1 [imported]
- Arabidopsis thaliana, partial (19%)
Length = 1257
Score = 54.7 bits (130), Expect = 3e-08
Identities = 29/76 (38%), Positives = 49/76 (64%), Gaps = 5/76 (6%)
Frame = +3
Query: 129 EEKKVRIERYRIKRNQRNFNKKIKYVCRKTLADRRPRIRGRFAR-----NDEIDKKPIVE 183
+ ++ + ++R KR +R F+KKI+YV RK LA+RRPR+RG+F R N +++ +P
Sbjct: 975 DRREAALMKFRQKRKERCFDKKIRYVNRKQLAERRPRVRGQFVRKLNGINVDLNGQPAST 1154
Query: 184 WSHIGGGEEEDEEDEK 199
++EDEE+E+
Sbjct: 1155 -----DYDDEDEEEEE 1187
>TC78669 similar to GP|4091806|gb|AAC99310.1| CONSTANS-like protein 2 {Malus
x domestica}, partial (54%)
Length = 1045
Score = 53.5 bits (127), Expect = 6e-08
Identities = 25/49 (51%), Positives = 33/49 (67%), Gaps = 1/49 (2%)
Frame = +1
Query: 130 EKKVRIERYRIKRNQRNFNKKIKYVCRKTLADRRPRIRGRFA-RNDEID 177
+++ R+ RYR KR R F K I+Y RK A+ RPRI+GRFA R D +D
Sbjct: 736 DREARVMRYREKRKNRRFEKTIRYASRKAYAETRPRIKGRFAKRTDAVD 882
>TC82857 similar to PIR|T52076|T52076 ABI3-interacting protein aip1
[imported] - Arabidopsis thaliana, partial (11%)
Length = 818
Score = 50.4 bits (119), Expect = 5e-07
Identities = 27/77 (35%), Positives = 47/77 (60%), Gaps = 6/77 (7%)
Frame = +1
Query: 129 EEKKVRIERYRIKRNQRNFNKKIKYVCRKTLADRRPRIRGRFARN------DEIDKKPIV 182
+ ++ + ++R K+ +R F+KKI+YV RK LA+RRPR+RG+F D + P +
Sbjct: 130 DRREAALIKFRQKKKERCFDKKIRYVNRKQLAERRPRVRGQFVSKLNGVNVDLNGQPPSI 309
Query: 183 EWSHIGGGEEEDEEDEK 199
E+ +E+EED++
Sbjct: 310 EY-------DENEEDDQ 339
>TC88177 homologue to GP|10281004|dbj|BAB13742. pseudo-response regulator 7
{Arabidopsis thaliana}, partial (4%)
Length = 1310
Score = 50.4 bits (119), Expect = 5e-07
Identities = 28/70 (40%), Positives = 42/70 (60%)
Frame = +3
Query: 137 RYRIKRNQRNFNKKIKYVCRKTLADRRPRIRGRFARNDEIDKKPIVEWSHIGGGEEEDEE 196
++R KR +R F+KK++Y RK LAD+RPR+RG+F + D K EEE +E
Sbjct: 702 KFRQKRKERCFDKKVRYHSRKKLADQRPRVRGQFVKQIVSDTK-----------EEEIKE 848
Query: 197 DEKWNNIFNS 206
E+ ++ NS
Sbjct: 849 SEELVSMDNS 878
>TC92294 similar to GP|10281006|dbj|BAB13743. pseudo-response regulator 5
{Arabidopsis thaliana}, partial (7%)
Length = 772
Score = 47.0 bits (110), Expect = 6e-06
Identities = 19/54 (35%), Positives = 36/54 (66%)
Frame = +1
Query: 130 EKKVRIERYRIKRNQRNFNKKIKYVCRKTLADRRPRIRGRFARNDEIDKKPIVE 183
+++ + ++R+KR +R F KK++Y RK A++R R++G+F R + D P V+
Sbjct: 421 QREAALTKFRLKRKERCFEKKVRYQSRKKQAEQRLRVKGQFVRKVQNDDHPNVD 582
>AL383316 homologue to GP|13702811|gb| putative zinc finger protein {Oryza
sativa}, partial (10%)
Length = 389
Score = 47.0 bits (110), Expect = 6e-06
Identities = 21/39 (53%), Positives = 28/39 (70%)
Frame = +1
Query: 134 RIERYRIKRNQRNFNKKIKYVCRKTLADRRPRIRGRFAR 172
R+ RYR KR R F KKI+Y RK A++RPR++GRF +
Sbjct: 4 RVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVK 120
>AW560988 similar to PIR|JE0113|JE01 zinc-finger protein S3574 [imported] -
rice, partial (20%)
Length = 756
Score = 41.6 bits (96), Expect = 3e-04
Identities = 17/41 (41%), Positives = 27/41 (65%)
Frame = +2
Query: 135 IERYRIKRNQRNFNKKIKYVCRKTLADRRPRIRGRFARNDE 175
+ RY+ K+ R F+K+++Y RK AD R R++GRF + E
Sbjct: 344 VMRYKEKKKTRKFDKRVRYASRKERADVRRRVKGRFVKAGE 466
>TC86792 similar to GP|10281004|dbj|BAB13742. pseudo-response regulator 7
{Arabidopsis thaliana}, partial (32%)
Length = 2209
Score = 41.2 bits (95), Expect = 3e-04
Identities = 17/47 (36%), Positives = 31/47 (65%)
Frame = +1
Query: 126 YSPEEKKVRIERYRIKRNQRNFNKKIKYVCRKTLADRRPRIRGRFAR 172
+ E ++ + R +R +R F+K+++Y R+ LA++RPR RG+F R
Sbjct: 1780 FQREAALIKFRQKRKERKERCFHKQVRYQSRQKLAEQRPRYRGQFVR 1920
>BI308204 similar to PIR|JC7336|JC7 zinc-finger protein - Arabidopsis
thaliana, partial (46%)
Length = 811
Score = 38.9 bits (89), Expect = 0.002
Identities = 17/44 (38%), Positives = 29/44 (65%)
Frame = +1
Query: 127 SPEEKKVRIERYRIKRNQRNFNKKIKYVCRKTLADRRPRIRGRF 170
S ++ + R+R KR +RNF+KK++Y R+ +A R R +G+F
Sbjct: 463 SQPQRAASLIRFRQKRKERNFDKKVRYEVRQEVALRMQRSKGQF 594
>BE942112 similar to PIR|JE0113|JE01 zinc-finger protein S3574 [imported] -
rice, partial (20%)
Length = 566
Score = 38.9 bits (89), Expect = 0.002
Identities = 16/41 (39%), Positives = 26/41 (63%)
Frame = +3
Query: 135 IERYRIKRNQRNFNKKIKYVCRKTLADRRPRIRGRFARNDE 175
+ RY+ K+ R F+K+++Y RK AD R++GRF + E
Sbjct: 291 VMRYKEKKKTRKFDKRVRYASRKERADVLRRVKGRFVKAGE 413
>TC76731 similar to GP|13937151|gb|AAK50069.1 AT5g57180/MUL3_13 {Arabidopsis
thaliana}, partial (10%)
Length = 1235
Score = 38.5 bits (88), Expect = 0.002
Identities = 17/37 (45%), Positives = 25/37 (66%)
Frame = +2
Query: 131 KKVRIERYRIKRNQRNFNKKIKYVCRKTLADRRPRIR 167
++ + RY+ KR R +KKI+Y RK ADRRPR++
Sbjct: 98 REASVMRYKEKRRTRLISKKIRYQVRKVNADRRPRMK 208
>TC93306 homologue to GP|10281006|dbj|BAB13743. pseudo-response regulator 5
{Arabidopsis thaliana}, partial (5%)
Length = 818
Score = 38.1 bits (87), Expect = 0.003
Identities = 34/164 (20%), Positives = 69/164 (41%), Gaps = 11/164 (6%)
Frame = +2
Query: 12 ELDSFQDTLSQLNNSELSSGYSSYGGSPSPSTPILMQRSISSHSLQYN--NGTHHYPLSA 69
+ D+F + + NNSE G+ +P+ + Q S H + T +S+
Sbjct: 368 QADAFYQSNVKQNNSEQLYEPRGPNGNSTPNQIMYTQEHKSEHPEDQRLISPTTDQSVSS 547
Query: 70 FFADLLDSDDAPVRKVCSTGDLQRINGMQHNHH----HHVDSPLSSESSMIIEGMSRVCP 125
F C+ G+ N + + + +V+ + ++ + EG +
Sbjct: 548 SF--------------CNNGNASNFNSIGYGSNCGSSGNVEQVATFRTAAVSEGKNEELT 685
Query: 126 YSPEE-----KKVRIERYRIKRNQRNFNKKIKYVCRKTLADRRP 164
S ++ + ++R+KR +R + KK++Y RK LA++RP
Sbjct: 686 NSGYSHRAMLREAALNKFRLKRKERCYEKKVRYESRKKLAEQRP 817
>TC88671 similar to PIR|JC7336|JC7336 zinc-finger protein - Arabidopsis
thaliana, partial (44%)
Length = 1272
Score = 35.4 bits (80), Expect = 0.018
Identities = 17/51 (33%), Positives = 30/51 (58%)
Frame = +2
Query: 112 ESSMIIEGMSRVCPYSPEEKKVRIERYRIKRNQRNFNKKIKYVCRKTLADR 162
+ S+ +E M YS ++ + R+R KR +R F+KK++Y R+ +A R
Sbjct: 464 QQSLRVESMDFPTKYSQLHREASLLRFRQKRKERCFDKKVRYEVRQEVALR 616
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.314 0.132 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,988,450
Number of Sequences: 36976
Number of extensions: 126318
Number of successful extensions: 1259
Number of sequences better than 10.0: 73
Number of HSP's better than 10.0 without gapping: 1142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1228
length of query: 227
length of database: 9,014,727
effective HSP length: 93
effective length of query: 134
effective length of database: 5,575,959
effective search space: 747178506
effective search space used: 747178506
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 56 (26.2 bits)
Medicago: description of AC149490.13