BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC149307.10 + phase: 0 /pseudo
(114 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CB893203 71 7e-14
TC78379 similar to GP|14335038|gb|AAK59783.1 At1g08980/F7G19_15 ... 28 0.53
TC93217 similar to GP|13486661|dbj|BAB39898. contains EST AU0813... 27 0.90
AJ499443 weakly similar to GP|2581798|gb|A xylulose kinase; XylB... 27 0.90
TC84648 similar to GP|8843816|dbj|BAA97364.1 emb|CAB76911.1~gene... 27 1.2
TC92393 similar to GP|21537393|gb|AAM61734.1 unknown {Arabidopsi... 27 1.5
TC81750 similar to GP|15081791|gb|AAK82550.1 At1g09280/T12M4_1 {... 26 2.0
TC86114 similar to PIR|T14580|T14580 SIEP1L protein precursor - ... 25 3.4
TC84079 similar to PIR|T47796|T47796 ABC transporter-like protei... 25 3.4
TC89845 similar to PIR|F84779|F84779 probable protein kinase [im... 25 4.4
TC88071 similar to GP|20465634|gb|AAM20148.1 unknown protein {Ar... 25 4.4
BF633572 similar to GP|9758245|dbj| gb|AAD34762.1~gene_id:K3K7.1... 25 4.4
TC85048 25 5.8
TC81144 similar to PIR|T04462|T04462 hypothetical protein F4D11.... 25 5.8
TC79909 similar to GP|8101442|gb|AAF72555.1| cryptochrome 1 {Lyc... 25 5.8
TC84771 similar to PIR|T12994|T12994 riboflavin biosynthesis pro... 25 5.8
BQ150993 similar to GP|18157524|db collagen type XI alpha 2~part... 25 5.8
TC92930 similar to GP|13430332|gb|AAK25798.1 rubisco activase {Z... 25 5.8
BQ137192 25 5.8
TC77517 similar to PIR|T51159|T51159 HMG protein [imported] - Ar... 25 5.8
>CB893203
Length = 800
Score = 70.9 bits (172), Expect = 7e-14
Identities = 32/59 (54%), Positives = 41/59 (69%)
Frame = -3
Query: 56 LSDNCYSTWPNCIQIALQSGLSDHVHMVLRVDEENWGPRPLRMLKCWANFPGYALFVRE 114
+S++ WPN IQ AL GLSD ++L +DE NWGPR MLKCWA+ PGY LFV++
Sbjct: 798 VSESWCIKWPNMIQRALFRGLSDRCPIMLTIDEGNWGPRLHHMLKCWADLPGYHLFVKD 622
>TC78379 similar to GP|14335038|gb|AAK59783.1 At1g08980/F7G19_15 {Arabidopsis
thaliana}, partial (79%)
Length = 1549
Score = 28.1 bits (61), Expect = 0.53
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +3
Query: 47 SMSKLDRFLLSDNCYSTWPNCIQIALQSGLSDHVHMVLRVDEEN 90
+M L R+ +N + W N ++ L G+S+ V LR EEN
Sbjct: 1023 AMRLLQRYEFKNN-HGEWINAVKPELGPGISERVSDALRTTEEN 1151
>TC93217 similar to GP|13486661|dbj|BAB39898. contains EST
AU081362(R10239)~unknown protein {Oryza sativa (japonica
cultivar-group)}, partial (12%)
Length = 741
Score = 27.3 bits (59), Expect = 0.90
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +3
Query: 49 SKLDRFLLSDNCYSTWPNCIQIALQSGLSDHVHMVLRVDEENWGPRPLR 97
+ L +F L N N Q + S LS H H++ ++ +N P+P R
Sbjct: 150 TNLHQFHLYGNLNQVHLNIDQTKIHSLLSPHHHLISKMQTKNQ*PKPKR 296
>AJ499443 weakly similar to GP|2581798|gb|A xylulose kinase; XylB
{Thermoanaerobacter ethanolicus}, partial (5%)
Length = 269
Score = 27.3 bits (59), Expect = 0.90
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -3
Query: 79 HVHMVLRVDEENWGPRPLRMLKCWANFPGYALFV 112
+ + LR EN+ P+ ++KC NFP Y F+
Sbjct: 255 YYYFFLRFRMENYKANPISIIKC-MNFPHYTFFL 157
>TC84648 similar to GP|8843816|dbj|BAA97364.1
emb|CAB76911.1~gene_id:MUL3.9~similar to unknown protein
{Arabidopsis thaliana}, partial (16%)
Length = 552
Score = 26.9 bits (58), Expect = 1.2
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 36 RLFTWYRGDGYSMSKLDRFLLSDNCYSTWP 65
++ TW R D MSK+D +L D+ +S P
Sbjct: 310 KIMTWKRLDDEKMSKIDEQILWDHLHSR*P 399
>TC92393 similar to GP|21537393|gb|AAM61734.1 unknown {Arabidopsis
thaliana}, partial (65%)
Length = 819
Score = 26.6 bits (57), Expect = 1.5
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 6/45 (13%)
Frame = +1
Query: 57 SDNCYSTWPNCIQI----ALQSGLSDH--VHMVLRVDEENWGPRP 95
SDNCYS W ++ +++ LS H ++ + ENW +P
Sbjct: 76 SDNCYSKWERIEKVKGLWIVRNFLSSHKQSRLLSSIASENWFTQP 210
>TC81750 similar to GP|15081791|gb|AAK82550.1 At1g09280/T12M4_1 {Arabidopsis
thaliana}, partial (29%)
Length = 674
Score = 26.2 bits (56), Expect = 2.0
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +3
Query: 29 VDFPICGRLFTWYRGDGYSMSKLDRFLLSDN 59
VD P L T+YR + S+S L R LS N
Sbjct: 114 VDIPNLNDLLTFYRSNCSSLSLLGRVRLSSN 206
>TC86114 similar to PIR|T14580|T14580 SIEP1L protein precursor - beet,
partial (63%)
Length = 1536
Score = 25.4 bits (54), Expect = 3.4
Identities = 22/72 (30%), Positives = 30/72 (41%)
Frame = +3
Query: 21 KFIDDSFLVDFPICGRLFTWYRGDGYSMSKLDRFLLSDNCYSTWPNCIQIALQSGLSDHV 80
KF++ L DF + Y GD Y M + Y+T PN +AL+ GL
Sbjct: 129 KFVNSGDLGDFIV------EYGGD-YRMISIFNAPFQVGFYNTTPNAFTLALRIGLQRSE 287
Query: 81 HMVLRVDEENWG 92
+ V E N G
Sbjct: 288 QLFRWVWEANRG 323
>TC84079 similar to PIR|T47796|T47796 ABC transporter-like protein -
Arabidopsis thaliana, partial (2%)
Length = 726
Score = 25.4 bits (54), Expect = 3.4
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -3
Query: 9 SSFRQHDADIFNKFIDDSFLVDFP 32
+SF +D+ +F KF+ S+ +FP
Sbjct: 112 TSFLNNDSSLFIKFVGSSYSANFP 41
>TC89845 similar to PIR|F84779|F84779 probable protein kinase [imported] -
Arabidopsis thaliana, partial (32%)
Length = 993
Score = 25.0 bits (53), Expect = 4.4
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 37 LFTWYRGDGYSMSKLDRFLLSDNCYSTW 64
L +++ G SKL L+SD+C+S W
Sbjct: 731 LDSYHLGRKQGNSKLILLLISDHCHSLW 814
>TC88071 similar to GP|20465634|gb|AAM20148.1 unknown protein {Arabidopsis
thaliana}, partial (40%)
Length = 1712
Score = 25.0 bits (53), Expect = 4.4
Identities = 10/24 (41%), Positives = 13/24 (53%)
Frame = +1
Query: 14 HDADIFNKFIDDSFLVDFPICGRL 37
HD D++ +D L D P CG L
Sbjct: 127 HDGDVWRAALDTQSLEDDPDCGML 198
>BF633572 similar to GP|9758245|dbj| gb|AAD34762.1~gene_id:K3K7.14~similar to
unknown protein {Arabidopsis thaliana}, partial (29%)
Length = 409
Score = 25.0 bits (53), Expect = 4.4
Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
Frame = +1
Query: 74 SGLSDHVHMVLRV--DEENWGPRPL 96
+G SDH ++ R DE+ W PRPL
Sbjct: 298 TGGSDHAVVLWREQDDEDKWKPRPL 372
>TC85048
Length = 608
Score = 24.6 bits (52), Expect = 5.8
Identities = 9/21 (42%), Positives = 12/21 (56%)
Frame = -2
Query: 47 SMSKLDRFLLSDNCYSTWPNC 67
S+ L+ F + NC S WP C
Sbjct: 397 SIRILNSFRVHSNCMSGWPEC 335
>TC81144 similar to PIR|T04462|T04462 hypothetical protein F4D11.160 -
Arabidopsis thaliana, partial (13%)
Length = 1102
Score = 24.6 bits (52), Expect = 5.8
Identities = 8/23 (34%), Positives = 12/23 (51%)
Frame = +3
Query: 86 VDEENWGPRPLRMLKCWANFPGY 108
+ E WG R KCW+++ Y
Sbjct: 39 IGEAGWGSSFWRTTKCWSSWKAY 107
>TC79909 similar to GP|8101442|gb|AAF72555.1| cryptochrome 1 {Lycopersicon
esculentum}, partial (27%)
Length = 1058
Score = 24.6 bits (52), Expect = 5.8
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -1
Query: 54 FLLSDNCYSTWPNCIQIALQSGL 76
+L SD + TW +CI +L S L
Sbjct: 866 YLQSDGLHPTW*DCISTSLASSL 798
>TC84771 similar to PIR|T12994|T12994 riboflavin biosynthesis protein ribG
homolog T21L8.140 - Arabidopsis thaliana, partial (40%)
Length = 735
Score = 24.6 bits (52), Expect = 5.8
Identities = 13/38 (34%), Positives = 19/38 (49%)
Frame = -3
Query: 36 RLFTWYRGDGYSMSKLDRFLLSDNCYSTWPNCIQIALQ 73
R + YR SMS +++ NC S+ NCI + Q
Sbjct: 364 RHYNAYRHMPASMSGCQSWIVPSNCISSXNNCIASSSQ 251
>BQ150993 similar to GP|18157524|db collagen type XI alpha 2~partially
supported by GENSCAN and GraiEXP {Oryzias latipes},
partial (1%)
Length = 747
Score = 24.6 bits (52), Expect = 5.8
Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 8/24 (33%)
Frame = +2
Query: 91 WGPR------PLRM--LKCWANFP 106
WGPR PLR LK W NFP
Sbjct: 287 WGPRGPPGPFPLRKKTLKVWGNFP 358
>TC92930 similar to GP|13430332|gb|AAK25798.1 rubisco activase {Zantedeschia
aethiopica}, partial (42%)
Length = 765
Score = 24.6 bits (52), Expect = 5.8
Identities = 19/62 (30%), Positives = 25/62 (39%)
Frame = -2
Query: 23 IDDSFLVDFPICGRLFTWYRGDGYSMSKLDRFLLSDNCYSTWPNCIQIALQSGLSDHVHM 82
+ FLV C T + KL+ LLS +S W C QS S H H+
Sbjct: 365 LSSHFLVLGQACYHTPTVSPNSSWVDQKLEVLLLSSQAFSQWFQCQH--QQSTFSLHHHI 192
Query: 83 VL 84
+L
Sbjct: 191 LL 186
>BQ137192
Length = 1026
Score = 24.6 bits (52), Expect = 5.8
Identities = 8/21 (38%), Positives = 16/21 (76%)
Frame = -1
Query: 66 NCIQIALQSGLSDHVHMVLRV 86
+CI++AL G+ ++H +LR+
Sbjct: 945 HCIELALTCGIYHYIHSLLRL 883
>TC77517 similar to PIR|T51159|T51159 HMG protein [imported] - Arabidopsis
thaliana, partial (70%)
Length = 907
Score = 24.6 bits (52), Expect = 5.8
Identities = 19/66 (28%), Positives = 32/66 (47%)
Frame = -3
Query: 27 FLVDFPICGRLFTWYRGDGYSMSKLDRFLLSDNCYSTWPNCIQIALQSGLSDHVHMVLRV 86
F+++FP C F W + +S+ FL S S + I++ LS+ +L+
Sbjct: 461 FILNFPFCSLGFIW---SFFRLSQGFPFLSSSLSNS*YSLHIRVLCLESLSE----ILKE 303
Query: 87 DEENWG 92
DEE+ G
Sbjct: 302 DEESAG 285
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.327 0.142 0.481
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,192,043
Number of Sequences: 36976
Number of extensions: 60848
Number of successful extensions: 364
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 364
length of query: 114
length of database: 9,014,727
effective HSP length: 90
effective length of query: 24
effective length of database: 5,686,887
effective search space: 136485288
effective search space used: 136485288
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 50 (23.9 bits)
Medicago: description of AC149307.10