BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC149211.3 + phase: 0
(367 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC89974 similar to GP|7767653|gb|AAF69150.1| F27F5.2 {Arabidopsi... 29 0.15
TC80768 similar to GP|15081692|gb|AAK82501.1 At1g50380/F14I3_27 ... 32 0.30
TC80551 similar to GP|17130993|dbj|BAB73602. ORF_ID:alr1903~unkn... 32 0.39
TC89624 similar to GP|20160656|dbj|BAB89601. contains EST AU0581... 30 1.5
BG451333 similar to GP|16604434|gb| AT5g10910/T30N20_180 {Arabid... 30 1.9
CB891904 similar to PIR|T07929|T07 probable long-chain-fatty-aci... 29 2.5
TC78020 similar to GP|20127060|gb|AAM10949.1 putative bHLH trans... 29 2.5
TC83381 weakly similar to GP|1777386|gb|AAC49708.1| caffeic acid... 29 3.3
TC76646 similar to GP|1777386|gb|AAC49708.1| caffeic acid O-meth... 28 5.6
TC83799 28 7.4
TC85667 similar to GP|15809788|gb|AAL06822.1 AT5g39740/MKM21_30 ... 28 7.4
AW587289 similar to GP|14194121|gb At1g02640/T14P4_11 {Arabidops... 27 9.6
AA660543 similar to GP|2398529|emb| Transcription factor {Arabid... 27 9.6
TC88520 similar to GP|14588680|dbj|BAB61845. contains ESTs D1578... 27 9.6
BE124582 similar to PIR|S14973|S1497 extensin class I (clone uG)... 27 9.6
>TC89974 similar to GP|7767653|gb|AAF69150.1| F27F5.2 {Arabidopsis thaliana},
partial (12%)
Length = 1479
Score = 28.9 bits (63), Expect(2) = 0.15
Identities = 10/18 (55%), Positives = 13/18 (71%)
Frame = +2
Query: 32 GRRYFYNVKTDTSTWDPP 49
GRRY+YN T S+W+ P
Sbjct: 1169 GRRYYYNKSTRQSSWEKP 1222
Score = 23.1 bits (48), Expect(2) = 0.15
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +3
Query: 78 QSSIKQPEETLVDENLSGNQHEEY 101
+SS+ Q EE+++ L NQ+ +Y
Sbjct: 1272 KSSLLQREESIITTRLLSNQYGQY 1343
>TC80768 similar to GP|15081692|gb|AAK82501.1 At1g50380/F14I3_27
{Arabidopsis thaliana}, partial (35%)
Length = 831
Score = 32.3 bits (72), Expect = 0.30
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
Frame = +3
Query: 35 YFYNVKTDTSTWDPPPGMEHLAFGGCTEL-DDSETLKSSEECETQSSIKQPEETLVDENL 93
Y+Y KT G E++ + C L D++ + S + PE ++DEN+
Sbjct: 507 YYYYKKT-------LEGKEYVQY--CRRLISDNQKVPSVNDTMPTGPDAPPEHVILDENI 659
Query: 94 SGNQHEEYSAEIGVAAGNLVSDIATNSED 122
QHE YS IG G+ + + +ED
Sbjct: 660 KAQQHEYYS--IGTFKGSPNNKLVAYAED 740
>TC80551 similar to GP|17130993|dbj|BAB73602. ORF_ID:alr1903~unknown protein
{Nostoc sp. PCC 7120}, partial (4%)
Length = 1226
Score = 32.0 bits (71), Expect = 0.39
Identities = 30/145 (20%), Positives = 59/145 (40%), Gaps = 15/145 (10%)
Frame = +3
Query: 58 GGCTELDDSETLKSSEECETQSSIKQPEETLVDENLSGNQHEE-----------YSAEIG 106
G T + ETL + +E +++++ T + +S N HEE +A +
Sbjct: 774 GVSTNHHEKETLAAIQEIKSEAAFLSEAMTNSENRVSTNHHEEEKLAGVQEIKSEAAFLS 953
Query: 107 VAAGNLVSDIATNSEDQFLHHP----SDENLERTSCNGGVSRCSVSNTLDHVVSSNNKCS 162
N SDI+TN ++ ++ + EN E S L ++S
Sbjct: 954 EVMKNSGSDISTNLHEKEMYQSFVLNNQENFE-------------SGKLTELLSKEINIG 1094
Query: 163 QATSEVDHTPTEYMVIDTLELDSKS 187
+EV P Y++ ++E++ ++
Sbjct: 1095NVVTEVSFAPEGYILAMSVEMNKQN 1169
Score = 29.6 bits (65), Expect = 1.9
Identities = 25/82 (30%), Positives = 43/82 (51%), Gaps = 6/82 (7%)
Frame = +3
Query: 58 GGCTELDDSETLKSSEECETQSSIKQPEETLVDEN-LSGNQHEEYS----AEIGVAAGNL 112
G T + ETL + +E +++++ E T+ EN +S N HE+ + EI A
Sbjct: 669 GVSTNHHEKETLAAIQENKSEAAFPSDEATMNSENGVSTNHHEKETLAAIQEIKSEAA-F 845
Query: 113 VSDIATNSEDQF-LHHPSDENL 133
+S+ TNSE++ +H +E L
Sbjct: 846 LSEAMTNSENRVSTNHHEEEKL 911
>TC89624 similar to GP|20160656|dbj|BAB89601. contains EST
AU058101(S2419)~similar to Arabidopsis thaliana
chromosome5 At5g58640~unknown protein, partial (60%)
Length = 730
Score = 30.0 bits (66), Expect = 1.5
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +1
Query: 229 KYWCQRYILFSRFDDGVKMDEEGWFSVTPEIIAHHQ 264
K++ Q + S ++G + GWF+ P ++ HHQ
Sbjct: 16 KFFTQNSLSLSLCNNGSHTNPSGWFTTLPILLRHHQ 123
>BG451333 similar to GP|16604434|gb| AT5g10910/T30N20_180 {Arabidopsis
thaliana}, partial (14%)
Length = 536
Score = 29.6 bits (65), Expect = 1.9
Identities = 15/46 (32%), Positives = 25/46 (53%), Gaps = 3/46 (6%)
Frame = +2
Query: 266 SRCAGGTLIDCFTGAGG---NAIQFAQRCRHVVAIDIDPLKIDYAR 308
S C+ + +DC GA G N I+ ++ V +D+DP+ D A+
Sbjct: 338 SNCSLTSFVDCTLGAAGHSTNVIRGHPELKYFVGMDVDPVGRDTAQ 475
>CB891904 similar to PIR|T07929|T07 probable long-chain-fatty-acid--CoA
ligase (EC 6.2.1.3) isoform 2 - rape, partial (27%)
Length = 653
Score = 29.3 bits (64), Expect = 2.5
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = -1
Query: 22 DWMVLWDTFYGRRYFYNVKTDTSTWDPP 49
D + ++ FYG R FY VK STW PP
Sbjct: 242 DLCMAYNKFYGPRTFYRVK---STWVPP 168
>TC78020 similar to GP|20127060|gb|AAM10949.1 putative bHLH transcription
factor {Arabidopsis thaliana}, partial (30%)
Length = 1473
Score = 29.3 bits (64), Expect = 2.5
Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 10/94 (10%)
Frame = +3
Query: 123 QFLHHPSDENLERTSCNGGVSRCSVSNTLDHVVSSNNKCSQATSEVDHT--PTEYMVIDT 180
+ LH P + S NG ++ + + ++ + + +S D P E + +
Sbjct: 288 ELLHLPEQKPYLPNSSNGNLTFPTNAALIERAAKFSVFAGENSSPGDSRLFPVESVKNEP 467
Query: 181 LELDSK--------SDPFMSKQEKKVKRKHRRKK 206
E DS SDP +K ++ VKRK R KK
Sbjct: 468 QETDSNPCSTQECVSDPAENKNQRNVKRKEREKK 569
>TC83381 weakly similar to GP|1777386|gb|AAC49708.1| caffeic acid
O-methyltransferase {Pinus taeda}, partial (22%)
Length = 1021
Score = 28.9 bits (63), Expect = 3.3
Identities = 20/70 (28%), Positives = 32/70 (45%)
Frame = +1
Query: 272 TLIDCFTGAGGNAIQFAQRCRHVVAIDIDPLKIDYARHNAAIYRVDDQIDFIAGDFFVLA 331
TL+D G GG+ + + H+ I+ D + + A Y D I + GD FV
Sbjct: 688 TLVDVGGGIGGSMSEIVKAYPHIQGINFD---LPHVVSTAPKY---DGITHVGGDMFVSI 849
Query: 332 PKLKADTVFL 341
P AD +++
Sbjct: 850 P--SADAIYI 873
>TC76646 similar to GP|1777386|gb|AAC49708.1| caffeic acid
O-methyltransferase {Pinus taeda}, partial (36%)
Length = 1509
Score = 28.1 bits (61), Expect = 5.6
Identities = 19/70 (27%), Positives = 31/70 (44%)
Frame = +3
Query: 272 TLIDCFTGAGGNAIQFAQRCRHVVAIDIDPLKIDYARHNAAIYRVDDQIDFIAGDFFVLA 331
+L+D G GG+ + + H+ AI+ D H + D I + GD FV
Sbjct: 723 SLVDVGGGIGGSLSEIVRAYPHIQAINFD------LPHVVSTAPNFDGITHVGGDMFVSV 884
Query: 332 PKLKADTVFL 341
P AD +++
Sbjct: 885 P--SADAIYM 908
>TC83799
Length = 487
Score = 27.7 bits (60), Expect = 7.4
Identities = 9/12 (75%), Positives = 12/12 (100%)
Frame = +3
Query: 226 TIEKYWCQRYIL 237
TIEK+WCQ++IL
Sbjct: 315 TIEKFWCQKFIL 350
>TC85667 similar to GP|15809788|gb|AAL06822.1 AT5g39740/MKM21_30
{Arabidopsis thaliana}, partial (98%)
Length = 1189
Score = 27.7 bits (60), Expect = 7.4
Identities = 14/46 (30%), Positives = 25/46 (53%), Gaps = 3/46 (6%)
Frame = +2
Query: 186 KSDPFMSKQEKKVKRKHRR---KKLYYETEDLEFQKMPEAYSATIE 228
++DP + K EK+ ++H+R KKL YE + A +A ++
Sbjct: 788 RADPTIKKSEKQPPKQHKRYNLKKLTYEERKAKLVSRLAALNAAVD 925
>AW587289 similar to GP|14194121|gb At1g02640/T14P4_11 {Arabidopsis
thaliana}, partial (26%)
Length = 625
Score = 27.3 bits (59), Expect = 9.6
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +2
Query: 279 GAGGNAIQFAQRCRHVVAIDIDPLK-IDYARHNAAIYRVDDQIDF 322
G GN ++ A C+H A D+D +D NA + + D + F
Sbjct: 62 GTDGNKLKVAACCKHFTAYDVDNWNGVDRFHFNALVSKQDIEDTF 196
>AA660543 similar to GP|2398529|emb| Transcription factor {Arabidopsis
thaliana}, partial (48%)
Length = 567
Score = 27.3 bits (59), Expect = 9.6
Identities = 10/38 (26%), Positives = 23/38 (60%)
Frame = +3
Query: 88 LVDENLSGNQHEEYSAEIGVAAGNLVSDIATNSEDQFL 125
+++ N+SGN+ + S +GN+ +++ +D+FL
Sbjct: 141 IINFNMSGNKRNQTSPVGSPTSGNISDSLSSKEQDRFL 254
>TC88520 similar to GP|14588680|dbj|BAB61845. contains ESTs D15784(C1252)
AU062596(C12406) AU108583(C12406) C98229(C1252)~similar
to Arabidopsis, partial (86%)
Length = 1359
Score = 27.3 bits (59), Expect = 9.6
Identities = 16/64 (25%), Positives = 28/64 (43%)
Frame = +1
Query: 138 CNGGVSRCSVSNTLDHVVSSNNKCSQATSEVDHTPTEYMVIDTLELDSKSDPFMSKQEKK 197
C+G + RCS+S S++ V++T E L +S +SKQ K
Sbjct: 61 CSGSIQRCSMS------------MSESEEHVEYTDIEPSAAARKRLRDRSKEVLSKQAVK 204
Query: 198 VKRK 201
+ ++
Sbjct: 205 IAKR 216
>BE124582 similar to PIR|S14973|S1497 extensin class I (clone uG) - tomato
(fragment), partial (18%)
Length = 149
Score = 27.3 bits (59), Expect = 9.6
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = +2
Query: 339 VFLSPPWGGPDYSK 352
+ L+PPWGGP +SK
Sbjct: 5 LLLNPPWGGPIFSK 46
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.317 0.134 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,965,037
Number of Sequences: 36976
Number of extensions: 165989
Number of successful extensions: 852
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 852
length of query: 367
length of database: 9,014,727
effective HSP length: 97
effective length of query: 270
effective length of database: 5,428,055
effective search space: 1465574850
effective search space used: 1465574850
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)
Medicago: description of AC149211.3