BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC149211.1 + phase: 0
(141 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC91130 homologue to GP|11245494|gb|AAG33640.1 SPATULA {Arabidop... 117 1e-27
AW775035 similar to GP|13486760|dbj hypothetical protein {Oryza ... 99 6e-22
TC83351 similar to PIR|T47788|T47788 hypothetical protein F17J16... 74 2e-17
TC80777 homologue to GP|4115386|gb|AAD03387.1| unknown protein {... 81 2e-16
AW585039 similar to GP|13605859|gb AT4g02590/T10P11_13 {Arabidop... 75 1e-14
BF641877 similar to GP|13605859|gb AT4g02590/T10P11_13 {Arabidop... 70 2e-13
TC77805 similar to GP|20127064|gb|AAM10951.1 putative bHLH trans... 67 2e-12
TC90528 homologue to GP|21592490|gb|AAM64440.1 unknown {Arabidop... 65 1e-11
TC79766 homologue to GP|5923912|gb|AAD56411.1| bHLH transcriptio... 64 2e-11
CA919209 similar to SP|O80536|PIF3_ Phytochrome-interacting fact... 63 3e-11
TC93549 similar to GP|20127044|gb|AAM10942.1 putative bHLH trans... 63 5e-11
TC90648 similar to GP|20127044|gb|AAM10942.1 putative bHLH trans... 63 5e-11
TC88734 similar to GP|13346180|gb|AAK19612.1 GHDEL61 {Gossypium ... 60 4e-10
TC80122 similar to GP|19401700|gb|AAL87667.1 transcription facto... 57 3e-09
TC83430 similar to GP|19401700|gb|AAL87667.1 transcription facto... 56 4e-09
TC87518 weakly similar to PIR|E96714|E96714 probable DNA-binding... 56 4e-09
TC79250 similar to PIR|T06329|T06329 symbiotic ammonium transpor... 56 4e-09
TC77495 similar to GP|2673918|gb|AAB88652.1| unknown protein {Ar... 56 4e-09
TC89196 similar to GP|19401700|gb|AAL87667.1 transcription facto... 54 2e-08
TC77213 similar to PIR|T10861|T10861 phaseolin G-box binding pro... 54 2e-08
>TC91130 homologue to GP|11245494|gb|AAG33640.1 SPATULA {Arabidopsis
thaliana}, partial (20%)
Length = 766
Score = 117 bits (294), Expect = 1e-27
Identities = 63/81 (77%), Positives = 68/81 (83%)
Frame = +2
Query: 36 RSSSKRSRAAEFHNLSEKRRRSKINEKLKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQ 95
RSSSKRSRAAE HNLSEKRRRS+INEK+KALQNLIPNSNKTDKASMLDEAIEYLKQLQLQ
Sbjct: 8 RSSSKRSRAAEVHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQ 187
Query: 96 VQVSFLSLKMNNQTLKHVKYY 116
VQ+ L + N H Y+
Sbjct: 188 VQM----LSLRNGLSLHPMYF 238
>AW775035 similar to GP|13486760|dbj hypothetical protein {Oryza sativa
(japonica cultivar-group)}, partial (10%)
Length = 716
Score = 99.0 bits (245), Expect = 6e-22
Identities = 49/62 (79%), Positives = 55/62 (88%)
Frame = +1
Query: 37 SSSKRSRAAEFHNLSEKRRRSKINEKLKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQV 96
+ SKRSRAAE HNLSE+RRR +INEK++ALQ LIPN NK DKASMLDEAIEYLK LQLQV
Sbjct: 475 AGSKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQV 654
Query: 97 QV 98
Q+
Sbjct: 655 QM 660
>TC83351 similar to PIR|T47788|T47788 hypothetical protein F17J16.110 -
Arabidopsis thaliana, partial (18%)
Length = 882
Score = 73.9 bits (180), Expect(2) = 2e-17
Identities = 39/65 (60%), Positives = 49/65 (75%), Gaps = 2/65 (3%)
Frame = +1
Query: 22 EGSELPSS--KAAPPPRSSSKRSRAAEFHNLSEKRRRSKINEKLKALQNLIPNSNKTDKA 79
E +EL S K S++R+RAAE HNLSE+RRR +INEK+KALQ LIP+S+KTDK
Sbjct: 4 EDTELKSGVRKKTSQRSGSARRNRAAEVHNLSERRRRDRINEKMKALQQLIPHSSKTDKP 183
Query: 80 SMLDE 84
SML+E
Sbjct: 184SMLEE 198
Score = 30.4 bits (67), Expect(2) = 2e-17
Identities = 15/32 (46%), Positives = 20/32 (61%)
Frame = +2
Query: 85 AIEYLKQLQLQVQVSFLSLKMNNQTLKHVKYY 116
AIEYLK LQLQ+QV ++ M L ++Y
Sbjct: 200 AIEYLKSLQLQLQVMWMGSGMTPMMLPGYQHY 295
>TC80777 homologue to GP|4115386|gb|AAD03387.1| unknown protein {Arabidopsis
thaliana}, partial (39%)
Length = 1307
Score = 80.9 bits (198), Expect = 2e-16
Identities = 40/81 (49%), Positives = 61/81 (74%), Gaps = 2/81 (2%)
Frame = +1
Query: 24 SELPSSKAAPPPRSS--SKRSRAAEFHNLSEKRRRSKINEKLKALQNLIPNSNKTDKASM 81
++ P+S A PR ++R +A + H+++E+ RR +I E++KALQ L+PN+NKTDKASM
Sbjct: 391 NQAPASGAPAQPRQKVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASM 570
Query: 82 LDEAIEYLKQLQLQVQVSFLS 102
LDE I+Y+K LQ+QV+V +S
Sbjct: 571 LDEIIDYVKFLQVQVKVLSMS 633
>AW585039 similar to GP|13605859|gb AT4g02590/T10P11_13 {Arabidopsis
thaliana}, partial (46%)
Length = 628
Score = 74.7 bits (182), Expect = 1e-14
Identities = 34/68 (50%), Positives = 54/68 (79%)
Frame = +1
Query: 35 PRSSSKRSRAAEFHNLSEKRRRSKINEKLKALQNLIPNSNKTDKASMLDEAIEYLKQLQL 94
PR ++R +A + H+++E+ RR +I E++KALQ L+P+ NKTDKA+MLDE ++Y+K L+L
Sbjct: 145 PRVRARRGQATDPHSIAERLRRERIAERMKALQELVPSINKTDKAAMLDEIVDYVKFLRL 324
Query: 95 QVQVSFLS 102
QV+V +S
Sbjct: 325 QVKVLSMS 348
>BF641877 similar to GP|13605859|gb AT4g02590/T10P11_13 {Arabidopsis
thaliana}, partial (55%)
Length = 642
Score = 70.5 bits (171), Expect = 2e-13
Identities = 34/86 (39%), Positives = 59/86 (68%), Gaps = 6/86 (6%)
Frame = +2
Query: 18 LKNDEGSELPSSKAAPP------PRSSSKRSRAAEFHNLSEKRRRSKINEKLKALQNLIP 71
L+ G +P++ A P PR ++R +A + H+++E+ RR +I E+++ALQ L+P
Sbjct: 374 LQTFHGQPMPTTVPAAPQPPAMRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVP 553
Query: 72 NSNKTDKASMLDEAIEYLKQLQLQVQ 97
+ NKTD+A+ML E ++Y+K L+LQV+
Sbjct: 554 SVNKTDRAAMLXEIVDYVKFLRLQVK 631
>TC77805 similar to GP|20127064|gb|AAM10951.1 putative bHLH transcription
factor {Arabidopsis thaliana}, partial (30%)
Length = 2068
Score = 67.4 bits (163), Expect = 2e-12
Identities = 39/97 (40%), Positives = 60/97 (61%), Gaps = 8/97 (8%)
Frame = +3
Query: 23 GSELPSSKAAPPPRSS-------SKRSRAAEFHNLSEKRRRSKINEKLKALQNLIPNSNK 75
G E + + PP ++R +A + H+L+E+ RR KI+E++K LQ+L+P NK
Sbjct: 1083 GEEKQNKSDSKPPEPQKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNK 1262
Query: 76 -TDKASMLDEAIEYLKQLQLQVQVSFLSLKMNNQTLK 111
T KA MLDE I Y++ LQ QV+ FLS+K+++ K
Sbjct: 1263 VTGKALMLDEIINYVQSLQRQVE--FLSMKLSSVNTK 1367
>TC90528 homologue to GP|21592490|gb|AAM64440.1 unknown {Arabidopsis
thaliana}, partial (37%)
Length = 950
Score = 64.7 bits (156), Expect = 1e-11
Identities = 38/86 (44%), Positives = 57/86 (66%), Gaps = 8/86 (9%)
Frame = +1
Query: 28 SSKAAP--PPRSS-----SKRSRAAEFHNLSEKRRRSKINEKLKALQNLIPNSNKT-DKA 79
SSK P PP+ ++R +A + H+L+E+ RR KI+E++K LQ+L+P NK KA
Sbjct: 589 SSKPPPSDPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKA 768
Query: 80 SMLDEAIEYLKQLQLQVQVSFLSLKM 105
+LDE I Y++ LQ QV+ FLS+K+
Sbjct: 769 LVLDEIINYIQSLQRQVE--FLSMKL 840
>TC79766 homologue to GP|5923912|gb|AAD56411.1| bHLH transcription factor
GBOF-1 {Tulipa gesneriana}, partial (28%)
Length = 944
Score = 64.3 bits (155), Expect = 2e-11
Identities = 38/98 (38%), Positives = 64/98 (64%), Gaps = 1/98 (1%)
Frame = +1
Query: 39 SKRSRAAEFHNLSEKRRRSKINEKLKALQNLIPNSNK-TDKASMLDEAIEYLKQLQLQVQ 97
++R +A + H+L+E+ RR KI+E++K LQ L+P +K T KA MLDE I Y++ LQ QV+
Sbjct: 502 ARRGQATDSHSLAERVRREKISERMKKLQQLVPGCDKVTGKALMLDEIINYVQSLQNQVE 681
Query: 98 VSFLSLKMNNQTLKHVKYYECFFLCNTFVLNHVKLSSV 135
FLS+K+ T + +Y+ +T ++ KL+++
Sbjct: 682 --FLSMKL---TSVNPMFYDMATDLDTLLVRQEKLNNL 780
>CA919209 similar to SP|O80536|PIF3_ Phytochrome-interacting factor 3
(Phytochrome-associated protein 3), partial (11%)
Length = 727
Score = 63.2 bits (152), Expect = 3e-11
Identities = 32/54 (59%), Positives = 38/54 (70%)
Frame = -2
Query: 37 SSSKRSRAAEFHNLSEKRRRSKINEKLKALQNLIPNSNKTDKASMLDEAIEYLK 90
+ SKRSRAAE HNLSE+RRR +INEK++ALQ LIPN NK + YLK
Sbjct: 375 AGSKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVSFFPSDFALLRYLK 214
>TC93549 similar to GP|20127044|gb|AAM10942.1 putative bHLH transcription
factor {Arabidopsis thaliana}, partial (22%)
Length = 715
Score = 62.8 bits (151), Expect = 5e-11
Identities = 36/83 (43%), Positives = 55/83 (65%), Gaps = 6/83 (7%)
Frame = +1
Query: 29 SKAAPPPRSS-----SKRSRAAEFHNLSEKRRRSKINEKLKALQNLIPNSNK-TDKASML 82
S+ + PP+ ++R +A H+L+E+ RR KI+E++K LQ L+P +K T KA ML
Sbjct: 220 SQNSDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQELVPGCSKVTGKAVML 399
Query: 83 DEAIEYLKQLQLQVQVSFLSLKM 105
DE I Y++ LQ QV+ FLS+K+
Sbjct: 400 DEIINYVQSLQRQVE--FLSMKL 462
>TC90648 similar to GP|20127044|gb|AAM10942.1 putative bHLH transcription
factor {Arabidopsis thaliana}, partial (21%)
Length = 1164
Score = 62.8 bits (151), Expect = 5e-11
Identities = 33/68 (48%), Positives = 49/68 (71%), Gaps = 1/68 (1%)
Frame = +3
Query: 39 SKRSRAAEFHNLSEKRRRSKINEKLKALQNLIPNSNK-TDKASMLDEAIEYLKQLQLQVQ 97
++R +A H+L+E+ RR KI+E+++ LQ L+P NK T KA MLDE I Y++ LQ QV+
Sbjct: 153 ARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVE 332
Query: 98 VSFLSLKM 105
FLS+K+
Sbjct: 333 --FLSMKL 350
>TC88734 similar to GP|13346180|gb|AAK19612.1 GHDEL61 {Gossypium hirsutum},
partial (40%)
Length = 1701
Score = 59.7 bits (143), Expect = 4e-10
Identities = 24/50 (48%), Positives = 43/50 (86%)
Frame = +3
Query: 48 HNLSEKRRRSKINEKLKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQ 97
H LSE+RRR+K+NE+ L++++P+++K DK S+LD+AIEYL++L+ +++
Sbjct: 1407 HVLSERRRRAKLNERFLTLRSMVPSNSKDDKVSILDDAIEYLRKLEKKIR 1556
>TC80122 similar to GP|19401700|gb|AAL87667.1 transcription factor RAU1
{Oryza sativa}, partial (72%)
Length = 1127
Score = 56.6 bits (135), Expect = 3e-09
Identities = 28/65 (43%), Positives = 46/65 (70%), Gaps = 1/65 (1%)
Frame = +2
Query: 34 PPRSSSKRSRAAEFHNLSEKRRRSKINEKLKALQNLIPNSNK-TDKASMLDEAIEYLKQL 92
P + +KR A +++E+ RR+KI+E+++ LQ+L+PN +K T+ A MLD A++Y+K L
Sbjct: 365 PMKIRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDKQTNTADMLDLAVDYIKDL 544
Query: 93 QLQVQ 97
Q Q Q
Sbjct: 545 QKQAQ 559
>TC83430 similar to GP|19401700|gb|AAL87667.1 transcription factor RAU1
{Oryza sativa}, partial (72%)
Length = 775
Score = 56.2 bits (134), Expect = 4e-09
Identities = 28/65 (43%), Positives = 47/65 (72%), Gaps = 1/65 (1%)
Frame = +1
Query: 34 PPRSSSKRSRAAEFHNLSEKRRRSKINEKLKALQNLIPNSNK-TDKASMLDEAIEYLKQL 92
P + +KR A +++E+ RR+KI+E+++ LQ+L+PN +K T+ + MLD A+EY+K L
Sbjct: 253 PCKIRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDKQTNTSDMLDLAVEYIKDL 432
Query: 93 QLQVQ 97
Q QV+
Sbjct: 433 QNQVE 447
>TC87518 weakly similar to PIR|E96714|E96714 probable DNA-binding protein
T6L1.19 [imported] - Arabidopsis thaliana, partial (41%)
Length = 1337
Score = 56.2 bits (134), Expect = 4e-09
Identities = 32/64 (50%), Positives = 47/64 (73%), Gaps = 1/64 (1%)
Frame = +2
Query: 36 RSSSKRSRAAEFHNLSEKRRRSKINEKLKALQNLIP-NSNKTDKASMLDEAIEYLKQLQL 94
R++ RS+ H+ +E+RRRSKINE+ +AL++LIP N +K DKAS L E IEY+ LQ
Sbjct: 185 RANPHRSK----HSETEQRRRSKINERFQALRDLIPENDSKRDKASFLLEVIEYIHFLQE 352
Query: 95 QVQV 98
++Q+
Sbjct: 353 KLQI 364
>TC79250 similar to PIR|T06329|T06329 symbiotic ammonium transport protein
SAT1 - soybean, partial (34%)
Length = 1145
Score = 56.2 bits (134), Expect = 4e-09
Identities = 30/82 (36%), Positives = 51/82 (61%)
Frame = +2
Query: 36 RSSSKRSRAAEFHNLSEKRRRSKINEKLKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQ 95
+ + +R A+ H ++E++RR KI++K AL L+P+ K DKAS+L +AI ++KQLQ +
Sbjct: 476 KKTDSAARNAQDHIIAERKRREKISQKFIALSALLPDLKKMDKASVLGDAINHVKQLQEK 655
Query: 96 VQVSFLSLKMNNQTLKHVKYYE 117
V++ + NN + Y E
Sbjct: 656 VKLLEEKNQKNNVESVSMVYVE 721
>TC77495 similar to GP|2673918|gb|AAB88652.1| unknown protein {Arabidopsis
thaliana}, partial (28%)
Length = 834
Score = 56.2 bits (134), Expect = 4e-09
Identities = 29/66 (43%), Positives = 45/66 (67%), Gaps = 1/66 (1%)
Frame = +3
Query: 34 PPRSSSKRSRAAEFHNLSEKRRRSKINEKLKALQNLIPNSNK-TDKASMLDEAIEYLKQL 92
P + +KR A +++E+ RR++I++++K LQ L P S+K T A MLD A+EY+K L
Sbjct: 300 PCKIRAKRGFATHPRSIAERVRRTRISDRIKKLQGLFPKSDKQTSTADMLDLAVEYIKDL 479
Query: 93 QLQVQV 98
Q QVQ+
Sbjct: 480 QEQVQI 497
>TC89196 similar to GP|19401700|gb|AAL87667.1 transcription factor RAU1
{Oryza sativa}, partial (63%)
Length = 1312
Score = 54.3 bits (129), Expect = 2e-08
Identities = 26/66 (39%), Positives = 46/66 (69%), Gaps = 1/66 (1%)
Frame = +1
Query: 34 PPRSSSKRSRAAEFHNLSEKRRRSKINEKLKALQNLIPNSNKTDK-ASMLDEAIEYLKQL 92
P + +KR A +++E+ RR +I+ ++K LQ+L PN++K + A MLDEA+EY+K L
Sbjct: 913 PCKIRAKRGFATHPRSIAERERRIRISARIKKLQDLFPNADKQNSTADMLDEAVEYIKDL 1092
Query: 93 QLQVQV 98
+ Q+++
Sbjct: 1093RKQLKI 1110
>TC77213 similar to PIR|T10861|T10861 phaseolin G-box binding protein PG1 -
kidney bean, partial (70%)
Length = 2391
Score = 53.9 bits (128), Expect = 2e-08
Identities = 31/90 (34%), Positives = 51/90 (56%), Gaps = 2/90 (2%)
Frame = +3
Query: 10 YSFLFVFGLKNDEGSELPSSKAAPPPRSSSKRSRAAE--FHNLSEKRRRSKINEKLKALQ 67
+S L V +K E S + P R + E H +E++RR K+N+K AL+
Sbjct: 1428 HSDLDVSAVKEGESSRVVEPGKRPKKRGRKPANGREEPLNHVEAERQRREKLNQKFYALR 1607
Query: 68 NLIPNSNKTDKASMLDEAIEYLKQLQLQVQ 97
++PN +K DKAS+L +AI Y+ +L+ ++Q
Sbjct: 1608 AVVPNVSKMDKASLLGDAISYINELKSKLQ 1697
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.317 0.132 0.369
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,761,446
Number of Sequences: 36976
Number of extensions: 63927
Number of successful extensions: 777
Number of sequences better than 10.0: 117
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of query: 141
length of database: 9,014,727
effective HSP length: 86
effective length of query: 55
effective length of database: 5,834,791
effective search space: 320913505
effective search space used: 320913505
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)
Medicago: description of AC149211.1