BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC149206.9 - phase: 0
(175 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC81407 homologue to GP|18650662|gb|AAL75809.1 ethylene response... 122 6e-29
TC77128 similar to GP|13877779|gb|AAK43967.1 putative AP2 domain... 92 8e-20
TC90274 similar to GP|10177219|dbj|BAB10294. contains similarity... 90 5e-19
BF650547 similar to GP|9758388|dbj| AP2 domain transcription fac... 89 1e-18
TC87696 similar to GP|9759176|dbj|BAB09791.1 contains similarity... 88 2e-18
TC93662 similar to GP|10177219|dbj|BAB10294. contains similarity... 87 3e-18
TC78754 homologue to GP|4099921|gb|AAD09248.1| EREBP-3 homolog {... 87 3e-18
TC86129 similar to GP|8571476|gb|AAF76898.1| apetala2 domain-con... 87 3e-18
TC90582 similar to GP|17381278|gb|AAL36057.1 AT4g34410/F10M10_18... 87 3e-18
AW559374 similar to GP|17381278|gb| AT4g34410/F10M10_180 {Arabid... 86 8e-18
TC78789 homologue to PIR|T48580|T48580 hypothetical protein T31B... 85 1e-17
BG586667 similar to GP|17381278|gb| AT4g34410/F10M10_180 {Arabid... 85 1e-17
TC80818 homologue to PIR|H96667|H96667 AP2-containing DNA-bindin... 85 2e-17
AW685524 homologue to GP|15982737|gb| AT4g23750/F9D16_220 {Arabi... 84 2e-17
TC86273 similar to SP|O80340|ERF4_ARATH Ethylene responsive elem... 84 4e-17
TC79624 similar to PIR|G86142|G86142 protein Similar to transcri... 83 5e-17
TC90000 homologue to GP|9294548|dbj|BAB02811.1 ethylene responsi... 82 1e-16
TC76339 homologue to GP|4099914|gb|AAD00708.1| ethylene-responsi... 81 2e-16
TC90093 similar to PIR|T47955|T47955 hypothetical protein F15G16... 81 2e-16
TC87781 weakly similar to GP|21554403|gb|AAM63508.1 transcriptio... 81 2e-16
>TC81407 homologue to GP|18650662|gb|AAL75809.1 ethylene response factor 1
{Lycopersicon esculentum}, partial (59%)
Length = 770
Score = 122 bits (307), Expect = 6e-29
Identities = 60/90 (66%), Positives = 69/90 (76%)
Frame = +1
Query: 5 KKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAAKAYDEAAILMSGRNAKTNFPI 64
+++RGVRQRHWGSWVSEIRHPLLK R+WLGTFETAE+AA+AYDEAA LM G A+TNFP
Sbjct: 67 QRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKARTNFPY 246
Query: 65 NVENQTNSISSSSTSSKAFSAVLSAKLRKC 94
N S+SSK SA L+AKL KC
Sbjct: 247 NPN------GPQSSSSKLLSATLTAKLNKC 318
>TC77128 similar to GP|13877779|gb|AAK43967.1 putative AP2 domain-containing
protein {Arabidopsis thaliana}, partial (44%)
Length = 1829
Score = 92.4 bits (228), Expect = 8e-20
Identities = 46/93 (49%), Positives = 63/93 (67%)
Frame = +3
Query: 4 SKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAAKAYDEAAILMSGRNAKTNFP 63
+K +RGVRQRHWG WV+EIR P + R+WLGTF+TAEEAA AYD+AA + G A+ NFP
Sbjct: 915 TKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFP 1094
Query: 64 INVENQTNSISSSSTSSKAFSAVLSAKLRKCCK 96
N+++Q + I K + + AKL+ C+
Sbjct: 1095 -NLKHQGSIIGGEFGEFKPLPSSVDAKLQAICE 1190
>TC90274 similar to GP|10177219|dbj|BAB10294. contains similarity to AP2
domain transcription factor~gene_id:MPF21.9 {Arabidopsis
thaliana}, partial (32%)
Length = 750
Score = 89.7 bits (221), Expect = 5e-19
Identities = 41/62 (66%), Positives = 46/62 (74%)
Frame = +3
Query: 5 KKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAAKAYDEAAILMSGRNAKTNFPI 64
+K+RGVRQR WG W +EIR P RVWLGTFETAE AA+AYDEAA+ G AK NFP
Sbjct: 159 RKYRGVRQRPWGKWAAEIRDPFKAARVWLGTFETAEAAARAYDEAALRFRGNKAKLNFPE 338
Query: 65 NV 66
NV
Sbjct: 339 NV 344
>BF650547 similar to GP|9758388|dbj| AP2 domain transcription factor-like
{Arabidopsis thaliana}, partial (24%)
Length = 418
Score = 88.6 bits (218), Expect = 1e-18
Identities = 47/91 (51%), Positives = 55/91 (59%), Gaps = 10/91 (10%)
Frame = -1
Query: 1 MVHSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAAKAYDEAAILMSGRNAKT 60
M +RGVRQR WG W +EIR P RVWLGTFETAE AA AYDEAA+ G AK
Sbjct: 403 MXRXXHYRGVRQRPWGKWAAEIRDPKKGARVWLGTFETAEAAATAYDEAALRFKGNKAKL 224
Query: 61 NFPINV----------ENQTNSISSSSTSSK 81
NFP + N+ N+ SSSS+SS+
Sbjct: 223 NFPRLISNLPSDPKPPRNKNNASSSSSSSSQ 131
>TC87696 similar to GP|9759176|dbj|BAB09791.1 contains similarity to
pathogenesis-related genes transcriptional
activator~gene_id:K19E1.9, partial (24%)
Length = 1725
Score = 88.2 bits (217), Expect = 2e-18
Identities = 50/122 (40%), Positives = 67/122 (53%), Gaps = 14/122 (11%)
Frame = +3
Query: 7 FRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAAKAYDEAAILMSGRNAKTNFPI-N 65
FRGVRQR WG W +EIR P+ ++R+WLGTF TAEEAA YD A+++ G NA TN+PI
Sbjct: 885 FRGVRQRPWGKWAAEIRDPIRRKRLWLGTFSTAEEAAAEYDRVAVMLHGSNAVTNYPITQ 1064
Query: 66 VENQTN---------SISSSSTSSKAFSAVLSAKLR----KCCKFPSPSLTCLRLDAENS 112
VE +T +SS ++ +S LS+ C P + +DA
Sbjct: 1065 VEVKTEIEKDFEVTPPVSSGNSDRGGYSDALSSPTSVLPYDCDSTPFDGFRYVDVDAFGF 1244
Query: 113 HI 114
HI
Sbjct: 1245 HI 1250
>TC93662 similar to GP|10177219|dbj|BAB10294. contains similarity to AP2
domain transcription factor~gene_id:MPF21.9 {Arabidopsis
thaliana}, partial (31%)
Length = 555
Score = 87.4 bits (215), Expect = 3e-18
Identities = 40/62 (64%), Positives = 46/62 (73%)
Frame = +3
Query: 5 KKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAAKAYDEAAILMSGRNAKTNFPI 64
+++RGVRQR WG W +EIR P RVWLGTFETAE AA+AYDEAA+ G AK NFP
Sbjct: 252 RRYRGVRQRPWGKWAAEIRDPHKAARVWLGTFETAEAAARAYDEAALRFRGNRAKLNFPE 431
Query: 65 NV 66
NV
Sbjct: 432 NV 437
>TC78754 homologue to GP|4099921|gb|AAD09248.1| EREBP-3 homolog
{Stylosanthes hamata}, partial (46%)
Length = 1038
Score = 87.4 bits (215), Expect = 3e-18
Identities = 46/78 (58%), Positives = 54/78 (68%), Gaps = 1/78 (1%)
Frame = +3
Query: 2 VHSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAAKAYDEAAILMSGRNAKTN 61
V FRGVR+R WG + +EIR P K RVWLGTF+TAEEAA+AYD AA G AKTN
Sbjct: 138 VKEAHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYDSAARQFRGPKAKTN 317
Query: 62 FPINVEN-QTNSISSSST 78
FP +EN + +S S SST
Sbjct: 318 FPFPIENIKIHSPSQSST 371
>TC86129 similar to GP|8571476|gb|AAF76898.1| apetala2 domain-containing
protein {Atriplex hortensis}, partial (41%)
Length = 2500
Score = 87.0 bits (214), Expect = 3e-18
Identities = 57/156 (36%), Positives = 76/156 (48%)
Frame = +2
Query: 4 SKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAAKAYDEAAILMSGRNAKTNFP 63
+K +RGVRQRHWG WV+EIR P + R+WLGTF+TAEEAA AYD AA + G A+ NFP
Sbjct: 1547 TKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDRAAYRLRGDFARLNFP 1726
Query: 64 INVENQTNSISSSSTSSKAFSAVLSAKLRKCCKFPSPSLTCLRLDAENSHIGVWQKGAGP 123
+ Q + K + + AKL C+ L NS V K G
Sbjct: 1727 NMKDQQQGGMFG---EFKVLHSSIDAKLDAICE---------SLGNNNSSDNVKNKKQGK 1870
Query: 124 RSESNWIMMVELERKKSASVPEKAKPEELSKNGLDD 159
S+ + KK + +P + +N DD
Sbjct: 1871 GSKKS--------LKKEVEAQPQPQPLVVVENNNDD 1954
>TC90582 similar to GP|17381278|gb|AAL36057.1 AT4g34410/F10M10_180
{Arabidopsis thaliana}, partial (29%)
Length = 979
Score = 87.0 bits (214), Expect = 3e-18
Identities = 42/69 (60%), Positives = 48/69 (68%)
Frame = +2
Query: 5 KKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAAKAYDEAAILMSGRNAKTNFPI 64
KK+RGVRQR WG W +EIR P RVWLGTF TAEEAA+AYD AAI G AK NFP+
Sbjct: 335 KKYRGVRQRPWGKWAAEIRDPRRAVRVWLGTFTTAEEAARAYDNAAIEFRGPRAKLNFPV 514
Query: 65 NVENQTNSI 73
E+ N +
Sbjct: 515 VDESLKNVV 541
>AW559374 similar to GP|17381278|gb| AT4g34410/F10M10_180 {Arabidopsis
thaliana}, partial (27%)
Length = 732
Score = 85.9 bits (211), Expect = 8e-18
Identities = 40/60 (66%), Positives = 44/60 (72%)
Frame = +3
Query: 5 KKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAAKAYDEAAILMSGRNAKTNFPI 64
KK+RGVRQR WG W +EIR P RVWLGTF TAEEAA+AYD AAI G AK NFP+
Sbjct: 294 KKYRGVRQRPWGKWAAEIRDPRRATRVWLGTFSTAEEAARAYDNAAIEFRGPRAKLNFPM 473
>TC78789 homologue to PIR|T48580|T48580 hypothetical protein T31B5.150 -
Arabidopsis thaliana, partial (33%)
Length = 1112
Score = 85.1 bits (209), Expect = 1e-17
Identities = 42/74 (56%), Positives = 52/74 (69%)
Frame = +1
Query: 7 FRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAAKAYDEAAILMSGRNAKTNFPINV 66
+RGVRQR WG W +EIR P RVWLGTF+TAE+AA AYD+AA+ G AK NFP V
Sbjct: 358 YRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEDAALAYDKAALKFKGTKAKLNFPERV 537
Query: 67 ENQTNSISSSSTSS 80
Q NS SS++ ++
Sbjct: 538 V-QCNSYSSTANNA 576
>BG586667 similar to GP|17381278|gb| AT4g34410/F10M10_180 {Arabidopsis
thaliana}, partial (28%)
Length = 740
Score = 85.1 bits (209), Expect = 1e-17
Identities = 40/60 (66%), Positives = 44/60 (72%)
Frame = +3
Query: 5 KKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAAKAYDEAAILMSGRNAKTNFPI 64
KK+RGVRQR WG W +EIR P RVWLGTF TAEEAA+AYD AAI G AK NFP+
Sbjct: 123 KKYRGVRQRPWGKWAAEIRDPRRAVRVWLGTFTTAEEAARAYDNAAIEFRGPRAKLNFPL 302
>TC80818 homologue to PIR|H96667|H96667 AP2-containing DNA-binding protein
51686-52693 [imported] - Arabidopsis thaliana, partial
(29%)
Length = 694
Score = 84.7 bits (208), Expect = 2e-17
Identities = 43/78 (55%), Positives = 52/78 (66%)
Frame = +3
Query: 5 KKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAAKAYDEAAILMSGRNAKTNFPI 64
K +RGVRQRHWG WV+EIR P + RVWLGT+ETAE AA AYD AA + G A+ NFP
Sbjct: 459 KLYRGVRQRHWGKWVAEIRLPQNRMRVWLGTYETAEAAAYAYDRAAYKLRGEYARLNFP- 635
Query: 65 NVENQTNSISSSSTSSKA 82
N+++ T ST A
Sbjct: 636 NLKDPTKLGFGDSTXLNA 689
>AW685524 homologue to GP|15982737|gb| AT4g23750/F9D16_220 {Arabidopsis
thaliana}, partial (21%)
Length = 666
Score = 84.3 bits (207), Expect = 2e-17
Identities = 39/60 (65%), Positives = 45/60 (75%)
Frame = +2
Query: 3 HSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAAKAYDEAAILMSGRNAKTNF 62
+ KKFRGVRQR WG W +EIR P + R+WLGTFETAEEAA YD AAI + G +A TNF
Sbjct: 449 NGKKFRGVRQRPWGKWAAEIRDPARRVRLWLGTFETAEEAAMVYDNAAIKLRGPDALTNF 628
>TC86273 similar to SP|O80340|ERF4_ARATH Ethylene responsive element binding
factor 4 (AtERF4). [Mouse-ear cress] {Arabidopsis
thaliana}, partial (43%)
Length = 1171
Score = 83.6 bits (205), Expect = 4e-17
Identities = 41/74 (55%), Positives = 52/74 (69%)
Frame = +3
Query: 6 KFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAAKAYDEAAILMSGRNAKTNFPIN 65
++RGVR+R WG + +EIR P K RVWLGTF+TAEEAA+AYD+AA G AKTNFP
Sbjct: 177 RYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDKAAREFRGSKAKTNFPTP 356
Query: 66 VENQTNSISSSSTS 79
+E N S S++
Sbjct: 357 LEIINNGSPSQSST 398
>TC79624 similar to PIR|G86142|G86142 protein Similar to transcription
factor TINY [imported] - Arabidopsis thaliana, partial
(58%)
Length = 679
Score = 83.2 bits (204), Expect = 5e-17
Identities = 40/87 (45%), Positives = 54/87 (61%)
Frame = +3
Query: 7 FRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAAKAYDEAAILMSGRNAKTNFPINV 66
+RGVR+R WG WVSEIR P K R+WLG+F E AAKAYD A + G+ A+ NFP V
Sbjct: 117 YRGVRKRRWGKWVSEIREPKKKSRIWLGSFPVPEMAAKAYDVAVYCLKGQKAQLNFPDEV 296
Query: 67 ENQTNSISSSSTSSKAFSAVLSAKLRK 93
EN + ++ +A +A +A + K
Sbjct: 297 ENLPLPATCTARDIQAAAAKAAASMMK 377
>TC90000 homologue to GP|9294548|dbj|BAB02811.1 ethylene responsive element
binding factor-like protein {Arabidopsis thaliana},
partial (25%)
Length = 458
Score = 81.6 bits (200), Expect = 1e-16
Identities = 37/59 (62%), Positives = 47/59 (78%)
Frame = +2
Query: 6 KFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAAKAYDEAAILMSGRNAKTNFPI 64
++RGVR+R WG + +EIR PL K RVWLGTF+TAE+AA+AYD AA + G AKTNFP+
Sbjct: 263 RYRGVRKRPWGRFAAEIRDPLKKARVWLGTFDTAEQAARAYDTAARNLRGPKAKTNFPL 439
>TC76339 homologue to GP|4099914|gb|AAD00708.1| ethylene-responsive element
binding protein homolog {Stylosanthes hamata}, partial
(37%)
Length = 1110
Score = 81.3 bits (199), Expect = 2e-16
Identities = 44/77 (57%), Positives = 53/77 (68%), Gaps = 3/77 (3%)
Frame = +2
Query: 7 FRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAAKAYDEAAILMSGRNAKTNF---P 63
FRGVR+R WG + +EIR P K RVWLGTF+TAEEAA+AYD AA G AKTNF P
Sbjct: 143 FRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYDNAARQFRGPKAKTNFPPPP 322
Query: 64 INVENQTNSISSSSTSS 80
+V+ + S SS+ SS
Sbjct: 323 SDVKEDSPSQSSTVESS 373
>TC90093 similar to PIR|T47955|T47955 hypothetical protein F15G16.20 -
Arabidopsis thaliana, partial (24%)
Length = 1005
Score = 81.3 bits (199), Expect = 2e-16
Identities = 38/61 (62%), Positives = 45/61 (73%)
Frame = +3
Query: 2 VHSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAAKAYDEAAILMSGRNAKTN 61
+ +KK+RGVRQR WG W +EIR P RVWLGTF+TAEEAA YD AAI + G +A TN
Sbjct: 681 IPAKKYRGVRQRPWGKWAAEIRDPARGVRVWLGTFQTAEEAAIVYDNAAIKLRGPDALTN 860
Query: 62 F 62
F
Sbjct: 861 F 863
>TC87781 weakly similar to GP|21554403|gb|AAM63508.1 transcription factor
TINY putative {Arabidopsis thaliana}, partial (44%)
Length = 884
Score = 80.9 bits (198), Expect = 2e-16
Identities = 43/81 (53%), Positives = 53/81 (65%), Gaps = 5/81 (6%)
Frame = +2
Query: 7 FRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAAKAYDEAAILMSGRNAKTNFPINV 66
F GVR+R WG +VSEIR P K R+WLG+FE+AE AA+AYD AA + G +A NFP V
Sbjct: 188 FHGVRKRSWGRYVSEIRLPGQKTRIWLGSFESAEMAARAYDSAAFFLKGNSASLNFPEEV 367
Query: 67 ENQTNSISSS-----STSSKA 82
E +SSS S +SKA
Sbjct: 368 EFLPRPLSSSRRDIQSAASKA 430
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.313 0.127 0.369
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,718,963
Number of Sequences: 36976
Number of extensions: 77806
Number of successful extensions: 612
Number of sequences better than 10.0: 140
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 591
length of query: 175
length of database: 9,014,727
effective HSP length: 90
effective length of query: 85
effective length of database: 5,686,887
effective search space: 483385395
effective search space used: 483385395
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)
Medicago: description of AC149206.9