BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC149197.7 - phase: 0
(218 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC78009 similar to GP|19424097|gb|AAL87328.1 unknown protein {Ar... 29 1.2
TC86443 similar to GP|16226657|gb|AAL16225.1 AT4g30240/F9N11_90 ... 29 1.2
BI268054 weakly similar to GP|10177560|db glucuronosyl transfera... 28 2.1
BG452711 28 2.1
AW560988 similar to PIR|JE0113|JE01 zinc-finger protein S3574 [i... 28 3.6
CA918271 similar to PIR|T51513|T51 hypothetical protein F5E19_15... 27 6.1
TC79293 weakly similar to GP|15290056|dbj|BAB63750. putative glu... 27 7.9
TC87209 similar to GP|9663767|emb|CAC01237.1 RNA Binding Protein... 27 7.9
BG648313 similar to GP|9279604|dbj DNA-binding protein GT-1 {Ara... 27 7.9
>TC78009 similar to GP|19424097|gb|AAL87328.1 unknown protein {Arabidopsis
thaliana}, partial (35%)
Length = 1134
Score = 29.3 bits (64), Expect = 1.2
Identities = 16/66 (24%), Positives = 35/66 (52%)
Frame = +1
Query: 51 IIEPSQSMQRAGQRLIQGLKDLPLIHSYDSIQALSKDISKSERGHDLVIASYVLGEIPSI 110
I + SQS +G ++I L++ L+ + IQAL + K+++ + +S+ L ++
Sbjct: 418 IRKSSQSAVGSGDKMIPDLENKLLLAGFSEIQALQSSVIKAKKPSWKIGSSFALKKVVKS 597
Query: 111 KDRITI 116
++ I
Sbjct: 598 SPKVQI 615
>TC86443 similar to GP|16226657|gb|AAL16225.1 AT4g30240/F9N11_90
{Arabidopsis thaliana}, partial (27%)
Length = 1538
Score = 29.3 bits (64), Expect = 1.2
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = +1
Query: 147 SYILWMEERKHRKSSKKNNEVCKDLIT 173
+Y W+ ER+ R + ++ NE+C++L T
Sbjct: 307 AYRAWLRERRERSNPEELNELCRELQT 387
>BI268054 weakly similar to GP|10177560|db glucuronosyl transferase-like
protein {Arabidopsis thaliana}, partial (21%)
Length = 650
Score = 28.5 bits (62), Expect = 2.1
Identities = 27/99 (27%), Positives = 45/99 (45%), Gaps = 8/99 (8%)
Frame = +3
Query: 70 KDLPLIH---SYDSIQALSKDISKSERGHDLVIASYVLGEIPSIKDRITILRQLWDQTQD 126
KDLPL + YD +Q++ K +S + G + + S++D + L QL +
Sbjct: 51 KDLPLFNLTNQYDFLQSIGKTLSITPLG-------VIFNTVESLED--SSLNQLQKLYKA 203
Query: 127 VLVLVEP-----GTPHGSSIIAQMRSYILWMEERKHRKS 160
L + P + SSI+ + + I W+ K RKS
Sbjct: 204 NLFPIGPLHMIANDANNSSILQENDNCISWLNYNKPRKS 320
>BG452711
Length = 672
Score = 28.5 bits (62), Expect = 2.1
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = -2
Query: 161 SKKNNEVCKDLITEKAGAFVVAPCPHDGTCPLVK 194
S+ + C ++T + FV++ PH TC +K
Sbjct: 206 SRPTHRECHFILTNQINTFVLSSLPHKSTCNFIK 105
>AW560988 similar to PIR|JE0113|JE01 zinc-finger protein S3574 [imported] -
rice, partial (20%)
Length = 756
Score = 27.7 bits (60), Expect = 3.6
Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 10/82 (12%)
Frame = +2
Query: 131 VEPGTPHGSSIIAQMRSYILWMEERKHRKSSKKNNEVCKDLITEKAGAFVVAPCPHDGTC 190
V+ G + ++Q RSY + + K +K SKK + K I F V C C
Sbjct: 452 VKAGEAYDYDPLSQTRSY*VVLPFFKDKKGSKKTVQQYKLRI-----RFSVLHCQEYPKC 616
Query: 191 PL----------VKSGKYCHFV 202
PL VK GK+C +
Sbjct: 617 PLQAPCLDYHLCVKLGKFCFLI 682
>CA918271 similar to PIR|T51513|T51 hypothetical protein F5E19_150 -
Arabidopsis thaliana, partial (41%)
Length = 722
Score = 26.9 bits (58), Expect = 6.1
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Frame = +1
Query: 26 DFGAGTVSAFWALQEVWPKSLEKVNIIEPSQSMQRAGQ---RLIQG-LKDLPLIHSYDSI 81
D+G T + + + L N E SQSM+R + +L+QG L+ L +H +D +
Sbjct: 460 DYGKSTAADYAKVASEKVSKLSSWNSFERSQSMKRRRRFIIKLLQGALRGLAYMHDHDRL 639
>TC79293 weakly similar to GP|15290056|dbj|BAB63750. putative
glucosyltransferase IS5a salicylate-induced {Oryza
sativa (japonica cultivar-group)}, partial (7%)
Length = 866
Score = 26.6 bits (57), Expect = 7.9
Identities = 19/86 (22%), Positives = 34/86 (39%)
Frame = +3
Query: 70 KDLPLIHSYDSIQALSKDISKSERGHDLVIASYVLGEIPSIKDRITILRQLWDQTQDVLV 129
KD P D + D++ + + L I S+ + + I R +D+ +
Sbjct: 390 KDQPDYIIADCVYPWINDLTNKPHISTIAFTGFSLFTI-SLIESLRINRSYFDKNSSLSS 566
Query: 130 LVEPGTPHGSSIIAQMRSYILWMEER 155
V+P PH + A ++ EER
Sbjct: 567 FVDPNFPHSITFCATTPKQLIAFEER 644
>TC87209 similar to GP|9663767|emb|CAC01237.1 RNA Binding Protein 45
{Nicotiana plumbaginifolia}, partial (69%)
Length = 1504
Score = 26.6 bits (57), Expect = 7.9
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +3
Query: 193 VKSGKYCHFVQRLERTSSQRAYKV 216
+ SGK C FVQ +R+S++ A +V
Sbjct: 951 IPSGKRCGFVQFADRSSAEEALRV 1022
>BG648313 similar to GP|9279604|dbj DNA-binding protein GT-1 {Arabidopsis
thaliana}, partial (53%)
Length = 815
Score = 26.6 bits (57), Expect = 7.9
Identities = 11/34 (32%), Positives = 24/34 (70%)
Frame = +2
Query: 97 LVIASYVLGEIPSIKDRITILRQLWDQTQDVLVL 130
L++ +++LG + ++D+ +ILR++W T +L L
Sbjct: 512 LMMPTFLLGPLKLLEDQRSILREVWIMTGILLPL 613
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.318 0.134 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,528,876
Number of Sequences: 36976
Number of extensions: 80523
Number of successful extensions: 377
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 377
length of query: 218
length of database: 9,014,727
effective HSP length: 92
effective length of query: 126
effective length of database: 5,612,935
effective search space: 707229810
effective search space used: 707229810
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)
Medicago: description of AC149197.7