TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC149197.6 + phase: 0 /pseudo
         (174 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BI262818 weakly similar to GP|6642775|gb| gag-pol polyprotein {V...    79  1e-15
CB892913 similar to GP|1769897|emb lectin receptor kinase {Arabi...    69  1e-12
BG453335 weakly similar to GP|18071369|g putative gag-pol polypr...    66  8e-12
TC93065                                                                50  5e-07
CB893164 weakly similar to GP|6016718|gb| hypothetical protein {...    26  9.3
CA920523 similar to PIR|H86313|H86 protein F2H15.10 [imported] -...    26  9.3
TC91529 similar to GP|21553452|gb|AAM62545.1 unknown {Arabidopsi...    26  9.3
AW585567                                                               26  9.3

>BI262818 weakly similar to GP|6642775|gb| gag-pol polyprotein {Vitis
           vinifera}, partial (24%)
          Length = 615

 Score = 78.6 bits (192), Expect = 1e-15
 Identities = 44/136 (32%), Positives = 78/136 (57%), Gaps = 2/136 (1%)
 Frame = +1

Query: 10  LPVFEGKNYDQWIVKMKVICRFQDVLEVVNDS--VPALASNATDMQ*TANRDAKKKDGKA 67
           LPVF+G+NY  W  +++      D+ E V +   V  L+ N T  Q   +++ K +  KA
Sbjct: 175 LPVFDGENYHIWAARIEAYLEANDLWEAVEEDYEVLPLSDNPTMAQIKNHKERKTRKSKA 354

Query: 68  MFFMHQSVSNEIFEKIVHYESAKEETWEALEKLYSGDGKLKKVRLQVLRRQYEVLTMEEE 127
              +  +VS EIF +I+  +SA E  W  L+  Y GD +++ ++   L R++E+  M+E 
Sbjct: 355 RATLFAAVSEEIFTRIMTIKSAFE-IWNFLKTEYEGDERIRGMQALNLIREFEMQKMKES 531

Query: 128 ETISQYFDKFVNLSNQ 143
           ETI +Y +K ++++N+
Sbjct: 532 ETIKEYANKLISIANK 579


>CB892913 similar to GP|1769897|emb lectin receptor kinase {Arabidopsis
           thaliana}, partial (35%)
          Length = 837

 Score = 68.6 bits (166), Expect = 1e-12
 Identities = 39/107 (36%), Positives = 60/107 (55%), Gaps = 2/107 (1%)
 Frame = +3

Query: 10  LPVFEGKNYDQWIVKMKVICRFQDVLEVVNDSVPALAS--NATDMQ*TANRDAKKKDGKA 67
           +P+ +G  YD   +KM  +    DV EVV           + T  Q    +D++K+D KA
Sbjct: 126 VPLLKGSTYDNCFIKMMALLGAHDVWEVVEKGYKESQDEDSLTKAQRDTLKDSRKRDKKA 305

Query: 68  MFFMHQSVSNEIFEKIVHYESAKEETWEALEKLYSGDGKLKKVRLQV 114
           +F ++Q++  + FEKI +  SAK E WE L+    G+ K+KKVRLQ+
Sbjct: 306 LFLIYQALDEDEFEKISNATSAK-EAWEKLKTSCQGEDKVKKVRLQI 443


>BG453335 weakly similar to GP|18071369|g putative gag-pol polyprotein {Oryza
           sativa}, partial (11%)
          Length = 660

 Score = 65.9 bits (159), Expect = 8e-12
 Identities = 32/88 (36%), Positives = 58/88 (65%)
 Frame = +1

Query: 56  ANRDAKKKDGKAMFFMHQSVSNEIFEKIVHYESAKEETWEALEKLYSGDGKLKKVRLQVL 115
           A+++ KKKD K +F +  S+    F++I     +KE +   LEK + GD K+++++LQ L
Sbjct: 106 AHKELKKKDCKELFLIQ*SLDEGNFKRISKSTRSKEAS-NILEKYHEGDDKVEQIKLQSL 282

Query: 116 RRQYEVLTMEEEETISQYFDKFVNLSNQ 143
           RR+++++ ME+E+ I+ Y  K +N+ NQ
Sbjct: 283 RRKFKLMQMEDEKKIADYISKLINVVNQ 366


>TC93065 
          Length = 783

 Score = 50.1 bits (118), Expect = 5e-07
 Identities = 30/107 (28%), Positives = 57/107 (53%)
 Frame = +3

Query: 43  PALASNATDMQ*TANRDAKKKDGKAMFFMHQSVSNEIFEKIVHYESAKEETWEALEKLYS 102
           P L +N T  Q   + D   K+G+A+  +H ++ ++IF KI++ E AK E W  L + Y 
Sbjct: 3   PPLPNNPTLAQIRNHSDEVAKEGRALAIIHAALHDDIFIKILNLEIAK-EAWSKLMEEYQ 179

Query: 103 GDGKLKKVRLQVLRRQYEVLTMEEEETISQYFDKFVNLSNQSQEW*K 149
           G  + KK+++  L    +    ++ + +  +  +F+ L ++S  W K
Sbjct: 180 GSERTKKMKVLNLEESLKH*K*KKLKLLESFLTEFLKLLHKSDCWEK 320


>CB893164 weakly similar to GP|6016718|gb| hypothetical protein {Arabidopsis
           thaliana}, partial (45%)
          Length = 818

 Score = 25.8 bits (55), Expect = 9.3
 Identities = 20/88 (22%), Positives = 41/88 (45%), Gaps = 11/88 (12%)
 Frame = +3

Query: 57  NRDAKKKDGKAMFFMHQSV----SNEIFEKIVHYESAKEE--TWEALEK----LYSGDGK 106
           N    KKDG ++ F H+++    S +   + +H+  + E+   W    K    +  G+ K
Sbjct: 372 NLPGAKKDGSSVHFFHRTMNAYSSGQRKRRKIHHRGSTEDHVRWHKTGKTKAIIEHGEHK 551

Query: 107 -LKKVRLQVLRRQYEVLTMEEEETISQY 133
             KK+ +  +R + E  + + +  + QY
Sbjct: 552 GFKKIMVLYIRSEKESKSYKSDWKMHQY 635


>CA920523 similar to PIR|H86313|H86 protein F2H15.10 [imported] - Arabidopsis
           thaliana, partial (25%)
          Length = 714

 Score = 25.8 bits (55), Expect = 9.3
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = +3

Query: 117 RQYEVLTMEEEETISQYFDK 136
           RQY+ +TM ++ T+SQ FD+
Sbjct: 450 RQYQAITMYQKITMSQCFDQ 509


>TC91529 similar to GP|21553452|gb|AAM62545.1 unknown {Arabidopsis
           thaliana}, partial (63%)
          Length = 833

 Score = 25.8 bits (55), Expect = 9.3
 Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
 Frame = +2

Query: 85  HYESAKEETWEALEKLYSGDGKLKKVRLQVLRRQYEVLTMEEEETISQYFDKFVNLSNQ- 143
           H E   EET EA   LY+G GK +K +L+  R       +    T+ +  +K++ L  + 
Sbjct: 461 HQEEE*EETHEAAPCLYTG-GKRRKGKLKCKR-------LSGRRTLRR*SEKWLQLQGKE 616

Query: 144 --SQEW*KCYRL 153
              ++W  C  L
Sbjct: 617 SGQKDWLNCSAL 652


>AW585567 
          Length = 491

 Score = 25.8 bits (55), Expect = 9.3
 Identities = 22/84 (26%), Positives = 36/84 (42%)
 Frame = +3

Query: 69  FFMHQSVSNEIFEKIVHYESAKEETWEALEKLYSGDGKLKKVRLQVLRRQYEVLTMEEEE 128
           FF   S SN+I        SA            + D +L+K R     ++  + T EEEE
Sbjct: 234 FFCKSSSSNQILRN----SSANSSPLATNSSTITKDPELEKKR-----KRNRI*TGEEEE 386

Query: 129 TISQYFDKFVNLSNQSQEW*KCYR 152
             +  + +F +  + S+   KC+R
Sbjct: 387 GTTPIYFRFQSKKSTSRTRFKCFR 458


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.332    0.140    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,622,705
Number of Sequences: 36976
Number of extensions: 46104
Number of successful extensions: 425
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 421
length of query: 174
length of database: 9,014,727
effective HSP length: 89
effective length of query: 85
effective length of database: 5,723,863
effective search space: 486528355
effective search space used: 486528355
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 55 (25.8 bits)