Medicago
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC149197.11 - phase: 0 
         (190 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AW126367 similar to GP|10172602|dbj gene_id:MJG19.10~similar to ...    32  0.11
BF004047 weakly similar to GP|15027957|gb| putative arginine/ser...    32  0.15
TC80288 weakly similar to PIR|T06029|T06029 hypothetical protein...    32  0.19
TC90460 similar to GP|15293207|gb|AAK93714.1 unknown protein {Ar...    31  0.33
TC86034 similar to GP|6815067|dbj|BAA90354.1 ESTs AU082210(C5365...    31  0.33
BI311490 weakly similar to GP|21751020|dbj unnamed protein produ...    30  0.43
TC82350 similar to GP|9837385|gb|AAG00554.1| retinitis pigmentos...    30  0.43
TC87688 similar to GP|10177535|dbj|BAB10930. gene_id:K1F13.21~un...    30  0.43
TC91658 similar to GP|14329812|emb|CAC40753. putative nucleosome...    30  0.57
TC77337 weakly similar to GP|4019275|gb|AAC95573.1| orf 48 {Atel...    30  0.74
TC82080 similar to GP|9757854|dbj|BAB08488.1 contains similarity...    30  0.74
TC88331 weakly similar to GP|21593279|gb|AAM65228.1 unknown {Ara...    30  0.74
AW690594 similar to GP|23498163|emb hypothetical protein {Plasmo...    29  0.97
TC90598 similar to GP|8953389|emb|CAB96662.1 putative protein {A...    29  0.97
AW695073 similar to GP|22831198|db putative chromodomain-helicas...    29  1.3
TC87372 similar to GP|14091469|gb|AAK53758.1 putative potassium ...    29  1.3
TC77681 similar to GP|22597156|gb|AAN03465.1 nucleolar histone d...    29  1.3
TC80588 similar to GP|23617092|dbj|BAC20775. putative ubiquitin ...    29  1.3
TC80893 similar to GP|4557063|gb|AAD22502.1| expressed protein {...    29  1.3
TC81365 similar to GP|14579399|gb|AAK69274.1 unknown {Glycine ma...    28  1.6

>AW126367 similar to GP|10172602|dbj gene_id:MJG19.10~similar to probable
           membrane-associated salt-inducible protein, partial (3%)
          Length = 467

 Score = 32.3 bits (72), Expect = 0.11
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = +1

Query: 100 DGLETDGDGEDDNEEVKETEEETEIADLG 128
           DGLE D  G+DD++E    EE+T+ A  G
Sbjct: 7   DGLELDAAGDDDDDESDSEEEDTDEASSG 93


>BF004047 weakly similar to GP|15027957|gb| putative arginine/serine-rich
           protein {Arabidopsis thaliana}, partial (11%)
          Length = 835

 Score = 32.0 bits (71), Expect = 0.15
 Identities = 23/56 (41%), Positives = 27/56 (48%), Gaps = 11/56 (19%)
 Frame = +1

Query: 82  EADDDAPREVDAIRRYESDGL-----------ETDGDGEDDNEEVKETEEETEIAD 126
           E DDD   EVD  +  E DG            E DGD + D E+ KE E ETE +D
Sbjct: 127 ERDDD---EVDGGQGGEPDGGKINGGGEREDGEVDGDDDKDEEQEKEVEVETERSD 285


>TC80288 weakly similar to PIR|T06029|T06029 hypothetical protein T28I19.100
           - Arabidopsis thaliana, partial (14%)
          Length = 1460

 Score = 31.6 bits (70), Expect = 0.19
 Identities = 24/63 (38%), Positives = 33/63 (52%)
 Frame = +3

Query: 59  KEQQAKRNPEDLEIDYEDWLKLQEADDDAPREVDAIRRYESDGLETDGDGEDDNEEVKET 118
           K ++ +    D+EID  D  K  EAD+D   EV      E    E +GD E +NE+ KE 
Sbjct: 600 KSEEVEDEGGDVEIDENDHEK-SEADNDREDEVVD----EEKDKEEEGDDETENED-KED 761

Query: 119 EEE 121
           EE+
Sbjct: 762 EEK 770


>TC90460 similar to GP|15293207|gb|AAK93714.1 unknown protein {Arabidopsis
           thaliana}, partial (28%)
          Length = 806

 Score = 30.8 bits (68), Expect = 0.33
 Identities = 15/49 (30%), Positives = 25/49 (50%)
 Frame = +3

Query: 68  EDLEIDYEDWLKLQEADDDAPREVDAIRRYESDGLETDGDGEDDNEEVK 116
           ED+ +  +D +   E DDD+ R +D   + E+     D     DNE++K
Sbjct: 420 EDINVGEDDMMD-DELDDDSGRRIDETIKTETSNATADPAAATDNEDLK 563


>TC86034 similar to GP|6815067|dbj|BAA90354.1 ESTs AU082210(C53655)
           AU056546(S20671)  AU056545(S20671) correspond to a
           region of the predicted, partial (42%)
          Length = 2412

 Score = 30.8 bits (68), Expect = 0.33
 Identities = 23/100 (23%), Positives = 46/100 (46%), Gaps = 3/100 (3%)
 Frame = +3

Query: 27  YLKHNVILIFVSSLIPLTREPWP---LDGITFDTLKEQQAKRNPEDLEIDYEDWLKLQEA 83
           YL  ++ +I  +  + L+  P P    D IT    K +    +PE  +    +  + + A
Sbjct: 3   YLSFSLHIIATNFPLSLSVSPNPNPNFDSITAMAKKRKLRSSDPEPTKQAEPEPQQEEVA 182

Query: 84  DDDAPREVDAIRRYESDGLETDGDGEDDNEEVKETEEETE 123
           +++   + +     E D  + +G+GE++ EE    EEE +
Sbjct: 183 EEEPTTQEEENTPIEEDQPQNEGEGEEEPEEEVAEEEEDD 302


>BI311490 weakly similar to GP|21751020|dbj unnamed protein product {Homo
           sapiens}, partial (22%)
          Length = 387

 Score = 30.4 bits (67), Expect = 0.43
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -3

Query: 90  EVDAIRRYESDGLETDGDGEDDNEEVKETEEETEIAD 126
           EV  +++ E D ++ + DGE+DN +    E + E  D
Sbjct: 361 EVSDVQKQEKDAIDGEDDGEEDNNDEFFNESQPEFED 251


>TC82350 similar to GP|9837385|gb|AAG00554.1| retinitis pigmentosa GTPase
           regulator-like protein {Takifugu rubripes}, partial (2%)
          Length = 759

 Score = 30.4 bits (67), Expect = 0.43
 Identities = 17/46 (36%), Positives = 25/46 (53%), Gaps = 3/46 (6%)
 Frame = +1

Query: 81  QEADDDAPREVDAIRRYESD---GLETDGDGEDDNEEVKETEEETE 123
           Q+ ++D PR V+       D   G+E  G+ E+D  E +E EEE E
Sbjct: 61  QKEEEDHPRAVEDSDNANEDTQYGVEETGEEEEDASENEEEEEEEE 198


>TC87688 similar to GP|10177535|dbj|BAB10930. gene_id:K1F13.21~unknown
           protein {Arabidopsis thaliana}, partial (46%)
          Length = 2077

 Score = 30.4 bits (67), Expect = 0.43
 Identities = 21/79 (26%), Positives = 34/79 (42%)
 Frame = +2

Query: 52  GITFDTLKEQQAKRNPEDLEIDYEDWLKLQEADDDAPREVDAIRRYESDGLETDGDGEDD 111
           GI    LK  +     E  E +YE   +  EAD+D+  + +  +  E +  + D D +D+
Sbjct: 566 GIEDKFLKIDELTEYLEKEEDNYEKGEERDEADEDSEEDDELEKAGEFEMDDEDDDDDDE 745

Query: 112 NEEVKETEEETEIADLGGG 130
            +E  E        D  GG
Sbjct: 746 EDEEAEDMGNVRYEDFFGG 802



 Score = 26.9 bits (58), Expect = 4.8
 Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
 Frame = +2

Query: 53  ITFDTLKEQQAKRNPEDLEIDYEDWLKLQEADDDAPREVDAIRRYESDGLETDGDGEDDN 112
           +  D  K+ + K+  E  E + +D+ +  + DDD    V+  +       E D + EDD 
Sbjct: 323 VPLDVGKKLEKKKRVELEEEESDDFDEELDDDDDDFEGVEKKKAKGGSEGEDDFEEEDDE 502

Query: 113 EE---VKETEEETEIADLGGG 130
           +E     E +EE E   + GG
Sbjct: 503 DEEGSEDEDDEEDEKEKVKGG 565


>TC91658 similar to GP|14329812|emb|CAC40753. putative nucleosome assembly
           protein 1 {Atropa belladonna}, partial (46%)
          Length = 583

 Score = 30.0 bits (66), Expect = 0.57
 Identities = 18/53 (33%), Positives = 28/53 (51%)
 Frame = +2

Query: 71  EIDYEDWLKLQEADDDAPREVDAIRRYESDGLETDGDGEDDNEEVKETEEETE 123
           E D++D +++ E D+D   E D            D D +DD+EE ++ EEE E
Sbjct: 59  ESDFDD-IEVDEDDEDGDEEDD-----------DDDDDDDDDEEDEDDEEEDE 181


>TC77337 weakly similar to GP|4019275|gb|AAC95573.1| orf 48 {Ateline
           herpesvirus 3}, partial (8%)
          Length = 986

 Score = 29.6 bits (65), Expect = 0.74
 Identities = 20/51 (39%), Positives = 26/51 (50%)
 Frame = +3

Query: 71  EIDYEDWLKLQEADDDAPREVDAIRRYESDGLETDGDGEDDNEEVKETEEE 121
           E D ED     E DD+   + D     E D  E +G  E+DNEE +E E+E
Sbjct: 597 EEDDEDGDDQDEDDDEDEDDDDEEEGGEED--EEEGVDEEDNEEEEEDEDE 743



 Score = 26.9 bits (58), Expect = 4.8
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +3

Query: 81  QEADDDAPREVDAIRRYESDGLETDGDGEDDNEEVKETEEETEIAD 126
           +E D+D   + +     E D  E +G  ED+ E V E + E E  D
Sbjct: 597 EEDDEDGDDQDEDDDEDEDDDDEEEGGEEDEEEGVDEEDNEEEEED 734


>TC82080 similar to GP|9757854|dbj|BAB08488.1 contains similarity to
           apoptosis antagonizing transcription
           factor~gene_id:MFB13.10, partial (37%)
          Length = 908

 Score = 29.6 bits (65), Expect = 0.74
 Identities = 17/62 (27%), Positives = 32/62 (51%)
 Frame = +2

Query: 59  KEQQAKRNPEDLEIDYEDWLKLQEADDDAPREVDAIRRYESDGLETDGDGEDDNEEVKET 118
           K ++ +++  DL+ +Y+D +   E +DD+  E +          E D +G D+ EE +  
Sbjct: 38  KSKKMQKSDSDLD-EYDDDMSFNEVNDDSEVEEEE---------EEDDEGSDEEEEDERQ 187

Query: 119 EE 120
           EE
Sbjct: 188 EE 193


>TC88331 weakly similar to GP|21593279|gb|AAM65228.1 unknown {Arabidopsis
           thaliana}, partial (43%)
          Length = 1085

 Score = 29.6 bits (65), Expect = 0.74
 Identities = 18/52 (34%), Positives = 28/52 (53%)
 Frame = -2

Query: 40  LIPLTREPWPLDGITFDTLKEQQAKRNPEDLEIDYEDWLKLQEADDDAPREV 91
           L+ L RE W ++   F+  +E Q KRN   L I     + L+E DDD  +++
Sbjct: 235 LLLLPRERWVVENQLFEVFREMQIKRNYVCLWILVV--MMLEEEDDDIVQKI 86


>AW690594 similar to GP|23498163|emb hypothetical protein {Plasmodium
           falciparum 3D7}, partial (10%)
          Length = 633

 Score = 29.3 bits (64), Expect = 0.97
 Identities = 18/67 (26%), Positives = 35/67 (51%)
 Frame = +3

Query: 57  TLKEQQAKRNPEDLEIDYEDWLKLQEADDDAPREVDAIRRYESDGLETDGDGEDDNEEVK 116
           T+ E   KR   +   + ED  +++E +D+   E +     E +  E + + ED++++ +
Sbjct: 9   TMAESSWKRRKVEEHNEEEDEGEVEEEEDEHDEEEED-EHDEEEEEEEEEEEEDEHDDEE 185

Query: 117 ETEEETE 123
           E EEE E
Sbjct: 186 EEEEEEE 206


>TC90598 similar to GP|8953389|emb|CAB96662.1 putative protein {Arabidopsis
           thaliana}, partial (18%)
          Length = 602

 Score = 29.3 bits (64), Expect = 0.97
 Identities = 19/71 (26%), Positives = 33/71 (45%)
 Frame = +3

Query: 59  KEQQAKRNPEDLEIDYEDWLKLQEADDDAPREVDAIRRYESDGLETDGDGEDDNEEVKET 118
           K ++  +N +DL  D  D       DD+   E  A+   E +G+  D D E  N ++ ET
Sbjct: 252 KLEEDLKNDDDLSKDDSD------EDDEISEEDFALLERELEGVLGDFDAELLNTDISET 413

Query: 119 EEETEIADLGG 129
           + + ++    G
Sbjct: 414 QGDNDVEKSSG 446


>AW695073 similar to GP|22831198|db putative
           chromodomain-helicase-DNA-binding protein {Oryza sativa
           (japonica cultivar-group)}, partial (2%)
          Length = 449

 Score = 28.9 bits (63), Expect = 1.3
 Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = +2

Query: 68  EDLEIDYEDWLKLQEADDDAPREVDAIRRYESDGLETDGDGE-DDNEEVKETEEETEIAD 126
           +D + DYE+     E D+D P + D        G     D E +D++EV +++E+  ++D
Sbjct: 230 DDDDADYEE----DEPDEDDPDDADFEPATSGRGANKYKDWEGEDSDEVDDSDEDIHVSD 397


>TC87372 similar to GP|14091469|gb|AAK53758.1 putative potassium transporter
            HAK1p {Mesembryanthemum crystallinum}, partial (38%)
          Length = 1660

 Score = 28.9 bits (63), Expect = 1.3
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +1

Query: 78   LKLQEADDDAPREVDAIRRYESDGLETDGDGEDDNEEVKETEEETEI 124
            L L   +DD    V       S+G++   D +DDN +++ T E  E+
Sbjct: 1009 LGLGSFEDDTKMTVVGTSSSNSEGVKMSEDDQDDNSQIEGTSELKEV 1149


>TC77681 similar to GP|22597156|gb|AAN03465.1 nucleolar histone deacetylase
           HD2-P39 {Glycine max}, partial (47%)
          Length = 1233

 Score = 28.9 bits (63), Expect = 1.3
 Identities = 15/52 (28%), Positives = 28/52 (53%)
 Frame = +2

Query: 79  KLQEADDDAPREVDAIRRYESDGLETDGDGEDDNEEVKETEEETEIADLGGG 130
           K +++DDD   + D I   + +    D D ED+++  ++ EEET +  +  G
Sbjct: 566 KDEDSDDDDESD-DEIGSSDDEMENADSDSEDEDDSDEDDEEETPVKKVDQG 718


>TC80588 similar to GP|23617092|dbj|BAC20775. putative ubiquitin
           carboxyl-terminal hydrolase {Oryza sativa (japonica
           cultivar-group)}, partial (30%)
          Length = 1110

 Score = 28.9 bits (63), Expect = 1.3
 Identities = 14/44 (31%), Positives = 22/44 (49%)
 Frame = -1

Query: 23  PNVIYLKHNVILIFVSSLIPLTREPWPLDGITFDTLKEQQAKRN 66
           P +++ +H +I+ FV    PL RE WP   I   T+      +N
Sbjct: 288 PLIVFFRHPLIIEFV----PLFRESWPDKSIIMPTMHAPTVNQN 169


>TC80893 similar to GP|4557063|gb|AAD22502.1| expressed protein {Arabidopsis
           thaliana}, partial (39%)
          Length = 883

 Score = 28.9 bits (63), Expect = 1.3
 Identities = 15/54 (27%), Positives = 29/54 (52%)
 Frame = +3

Query: 68  EDLEIDYEDWLKLQEADDDAPREVDAIRRYESDGLETDGDGEDDNEEVKETEEE 121
           +D++ + +D  +   + D+   E D     E++G     DGEDD+++  E +EE
Sbjct: 351 DDVQDEDDDGEEEDYSGDEGEEEGDPEDDPEANGAGGSDDGEDDDDDGDEEDEE 512


>TC81365 similar to GP|14579399|gb|AAK69274.1 unknown {Glycine max}, partial
           (38%)
          Length = 920

 Score = 28.5 bits (62), Expect = 1.6
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +1

Query: 101 GLETDGDGEDDNEEVKETEEETEIADLGGGWG 132
           G E + D ++D+E   ++EEE E +  GGG+G
Sbjct: 283 GGEEEEDEDEDDEWEDDSEEEEEESGEGGGYG 378


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.317    0.138    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,490,130
Number of Sequences: 36976
Number of extensions: 67035
Number of successful extensions: 581
Number of sequences better than 10.0: 63
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 568
length of query: 190
length of database: 9,014,727
effective HSP length: 91
effective length of query: 99
effective length of database: 5,649,911
effective search space: 559341189
effective search space used: 559341189
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)


Medicago: description of AC149197.11