Medicago
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC149134.1 - phase: 0 
         (555 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BF650289 weakly similar to GP|9049283|dbj| orf129a {Beta vulgari...   144  7e-35
BG586266 similar to GP|7267666|em RNA-directed DNA polymerase-li...   141  7e-34
TC83437 weakly similar to PIR|D86384|D86384 unknown protein [imp...   112  5e-25
BG447966 weakly similar to PIR|G96509|G96 protein F27F5.21 [impo...   100  1e-21
BG587108 similar to PIR|G96509|G9 protein F27F5.21 [imported] - ...    72  2e-16
BG586267 weakly similar to PIR|A84888|A8 hypothetical protein At...    55  8e-16
TC82948                                                                69  4e-12
BQ148771                                                               66  4e-11
BE248682 similar to GP|18568269|gb putative gag-pol polyprotein ...    61  1e-09
BG647708 weakly similar to GP|13786450|gb| putative reverse tran...    58  8e-09
BG582960                                                               54  2e-07
TC90516                                                                48  9e-06
TC87634                                                                40  1e-04
AW736247 weakly similar to PIR|T14619|T146 reverse transcriptase...    44  2e-04
TC81772                                                                37  0.020
TC85550 homologue to SP|P28002|COMT_MEDSA Caffeic acid 3-O-methy...    34  0.17
TC91765 weakly similar to GP|19881779|gb|AAM01180.1 Putative ret...    29  0.40
TC80819 weakly similar to GP|10140689|gb|AAG13524.1 putative non...    32  0.49
TC82754 homologue to GP|18181865|emb|CAD20127. raffinose synthas...    31  1.4
TC86802 similar to GP|7939577|dbj|BAA95778.1 ATP-dependent RNA h...    30  1.9

>BF650289 weakly similar to GP|9049283|dbj| orf129a {Beta vulgaris}, partial
           (69%)
          Length = 616

 Score =  144 bits (364), Expect = 7e-35
 Identities = 72/191 (37%), Positives = 108/191 (55%)
 Frame = +3

Query: 44  TKEEVKNAVFDLNSDDAPGPDVFGACFFQIYWNIVKKDVYEAVLDFFKNGWLPNNFNANS 103
           T  EVKNA+F ++S  APG D +   FF+  WNI+   V +A+LDFFK G++P   N   
Sbjct: 27  TAVEVKNALFSMDSSKAPGIDGYNVHFFKCSWNIIGDSVIDAILDFFKTGFMPKIINCTY 206

Query: 104 IILIPKTPNADSVDQYRTIALVNFKFKIINKVLADRLAKILPSIISKEQRGFVQGRNIRD 163
           + L+PK  N  SV  +R IA  +  +KII+K+L  R+  +L S++S+ Q  FV+GR I D
Sbjct: 207 VTLLPKEVNVTSVKNFRPIACCSVIYKIISKILTSRMQGVLNSVVSENQSAFVKGRVIFD 386

Query: 164 CIALTSEAINVLDNKSFGGNLALKIDVTKAFDTLNWDFLLLVLKTFGFNELFCNWIKTIL 223
            I L+ E +     K       +KID+ KA+D+  W F+  ++   GF   F NW+   L
Sbjct: 387 NIILSHELVKSYSRKGISPRCMVKIDLXKAYDSXEWPFIKHLMLELGFPYKFVNWVMAXL 566

Query: 224 HSSKMFISMNG 234
            ++    + NG
Sbjct: 567 TTASYTFNXNG 599


>BG586266 similar to GP|7267666|em RNA-directed DNA polymerase-like protein
           {Arabidopsis thaliana}, partial (18%)
          Length = 789

 Score =  141 bits (355), Expect = 7e-34
 Identities = 86/225 (38%), Positives = 125/225 (55%), Gaps = 3/225 (1%)
 Frame = -3

Query: 113 ADSVDQYRTIALVNFKFKIINKVLADRLAKILPSIISKEQRGFVQGRNIRDCIALTSEAI 172
           A  V +YRTIA  N ++KII K+L+ R+  +L SIIS  Q  FV GR I D + +T + +
Sbjct: 787 AKRVSEYRTIAPCNTQYKIIAKILSKRMQPLLRSIISPSQSAFVPGRAISDNVLITHKIL 608

Query: 173 NVLDNKSFGGN--LALKIDVTKAFDTLNWDFLLLVLKTFGFNELFCNWIKTILHSSKMFI 230
           + L       +  +A+K D+TKA+D + W+FL  VL   GF+ ++ +WI   + +     
Sbjct: 607 HYLRQSGAKKHVSMAVKTDMTKAYDRIAWNFLREVLTRLGFHGIWISWIMECVSTVSYSF 428

Query: 231 SMNGAQHGFFNCNRGVRQGDPLSPLLFCIVEEVLSRSISILADKGLIDLIAASRNNCLPF 290
            +NG   G    +RG+RQGDPLSP LF +  EVLS        KG +  +  +R NC P 
Sbjct: 427 LINGGPQGRVLPSRGLRQGDPLSPYLFILCTEVLSGLCQQALRKGTLPGVKVAR-NCPPI 251

Query: 291 -HCFYVDDLMVFCKAKMSSLIVLKSLFTRYADCSGQIMNIRKSFI 334
            H  + DD M F K+  SS  +L S+  +Y   SG+ +N  KS I
Sbjct: 250 NHLLFADDTMFFGKSNASSCAILLSIMDKYRAASGRCIN*TKSAI 116


>TC83437 weakly similar to PIR|D86384|D86384 unknown protein [imported] -
           Arabidopsis thaliana, partial (6%)
          Length = 951

 Score =  112 bits (279), Expect = 5e-25
 Identities = 87/347 (25%), Positives = 159/347 (45%), Gaps = 12/347 (3%)
 Frame = +2

Query: 83  YEAVLDFFKNGWLPNNFNANSIILIPKTPNADSVDQYRTIALVNFKFKIINKVLADRLAK 142
           +  V +F +N  L    N+  I LIPK  N   ++ +R I+LV   +KI+ K+LA+RL  
Sbjct: 2   FRFVSEFHRNRKLFKGINSTFIALIPKVDNPQRLNDFRPISLVGSLYKILGKLLANRLRV 181

Query: 143 ILPSIISKEQRGFVQGRNIRDCIALTSEAINVLDNKSFGGNLALKI-DVTKAFDTLNWDF 201
           ++ S+IS  Q  FV+ R I + + L                L +++ +  K F  L W  
Sbjct: 182 VIGSVISDAQSAFVKNRQILEMVFL*QM------------RLWMRLRN*RKIFCCLRWIL 325

Query: 202 LLLVLKTFG-----------FNELFCNWIKTILHSSKMFISMNGAQHGFFNCNRGVRQGD 250
             L+  + G           F  L+  WIK  + ++   + +NG+               
Sbjct: 326 KRLITLSIGLIWILF*VGMSFLVLWRKWIKECVSTATTSVLVNGS--------------- 460

Query: 251 PLSPLLFCIVEEVLSRSISILADKGLIDLIAASRNNCLPFHCFYVDDLMVFCKAKMSSLI 310
           P + L+  +V+  L    S     G+++ +  S       H  + +D ++      +++ 
Sbjct: 461 PTNVLMKSLVQTQLFTRYSF----GVVNPVVVS-------HLQFANDTLLLETKNWANIR 607

Query: 311 VLKSLFTRYADCSGQIMNIRKSFIFAGGITDTRMNNIVNILGFNVGSLPFTYLGAPIFKG 370
            L++    +   SG  +N  KS +    I  + ++   ++L + VG +PF YLG PI   
Sbjct: 608 ALRAALVIF*AMSGLKVNFHKSGLVCVNIAPSWLSEAASVLSWKVGKVPFLYLGMPIEGN 787

Query: 371 KPKGIHFQPIADKVKAKLAKWKASLLSIAGRIQLVKSVVQSMLVHTM 417
             +   ++PI +++KA+L  W +  LS  GR+ L+KSV+ S+ V+ +
Sbjct: 788 SRRLSFWEPIVNRIKARLTGWNSRFLSFGGRLVLLKSVLTSLSVYAL 928


>BG447966 weakly similar to PIR|G96509|G96 protein F27F5.21 [imported] -
           Arabidopsis thaliana, partial (7%)
          Length = 687

 Score =  100 bits (250), Expect = 1e-21
 Identities = 54/120 (45%), Positives = 70/120 (58%)
 Frame = +2

Query: 44  TKEEVKNAVFDLNSDDAPGPDVFGACFFQIYWNIVKKDVYEAVLDFFKNGWLPNNFNANS 103
           T+EEV  A+  ++   APGPD   A FFQ YW+IV K+V + VL    N       N   
Sbjct: 260 TEEEVLEAINQMHPVKAPGPDGLPALFFQKYWHIVGKEVQQMVLQVLNNSMETEELNKTF 439

Query: 104 IILIPKTPNADSVDQYRTIALVNFKFKIINKVLADRLAKILPSIISKEQRGFVQGRNIRD 163
           I+LIPK  N ++   YR I+L N   KII KV+A+R+ + LP +I  EQ  FVQGR I D
Sbjct: 440 IVLIPKGKNPNTPKDYRPISLCNVVMKIITKVIANRVKQTLPDVIDVEQSAFVQGRLITD 619


>BG587108 similar to PIR|G96509|G9 protein F27F5.21 [imported] - Arabidopsis
           thaliana, partial (17%)
          Length = 677

 Score = 72.0 bits (175), Expect(2) = 2e-16
 Identities = 38/89 (42%), Positives = 51/89 (56%)
 Frame = +3

Query: 70  FFQIYWNIVKKDVYEAVLDFFKNGWLPNNFNANSIILIPKTPNADSVDQYRTIALVNFKF 129
           FFQ  W+I+K D+ + V  F  +G L    N  +I LIPK      + + R I+L N  +
Sbjct: 411 FFQHSWHIIKMDLLKMVNSFLASGKLDTRLNTTNICLIPKKKRPTRMTELRPISLCNVGY 590

Query: 130 KIINKVLADRLAKILPSIISKEQRGFVQG 158
           KII+KVL  RL   LPS+IS+ Q  FV G
Sbjct: 591 KIISKVLCQRLKVCLPSLISETQSAFVHG 677



 Score = 32.0 bits (71), Expect(2) = 2e-16
 Identities = 15/40 (37%), Positives = 24/40 (59%)
 Frame = +2

Query: 25  EAIPKLVDATTNRLLTMLPTKEEVKNAVFDLNSDDAPGPD 64
           + I   +    N+ L  L T+EEV+ A+F ++ + APGPD
Sbjct: 275 DEITSSITPQMNQRLLRLATEEEVRLALFIMHPEKAPGPD 394


>BG586267 weakly similar to PIR|A84888|A8 hypothetical protein At2g45230
           [imported] - Arabidopsis thaliana, partial (16%)
          Length = 794

 Score = 55.5 bits (132), Expect(2) = 8e-16
 Identities = 27/79 (34%), Positives = 40/79 (50%)
 Frame = +3

Query: 26  AIPKLVDATTNRLLTMLPTKEEVKNAVFDLNSDDAPGPDVFGACFFQIYWNIVKKDVYEA 85
           +IP +V    N  L    ++EEV+ AVFD+N    PGPD     FFQ +W+ +  D+   
Sbjct: 360 SIPAIVTEEQNAQLMAQISREEVREAVFDINPHKCPGPDGMNVFFFQQFWDTMGDDLTSM 539

Query: 86  VLDFFKNGWLPNNFNANSI 104
             +F + G L    N  +I
Sbjct: 540 AQEFLRTGKLEEGINKTNI 596



 Score = 46.2 bits (108), Expect(2) = 8e-16
 Identities = 24/62 (38%), Positives = 39/62 (62%)
 Frame = +1

Query: 106 LIPKTPNADSVDQYRTIALVNFKFKIINKVLADRLAKILPSIISKEQRGFVQGRNIRDCI 165
           L+PK   A  + ++R I+L N  +KI++KVL+ RL  +LP II++ Q  F + + I D I
Sbjct: 601 LVPKKLEAKRLVEFRPISLCNVAYKIVSKVLSKRLKSVLPWIITETQAAFGRRQLISDNI 780

Query: 166 AL 167
            +
Sbjct: 781 LI 786


>TC82948 
          Length = 705

 Score = 69.3 bits (168), Expect = 4e-12
 Identities = 43/131 (32%), Positives = 66/131 (49%), Gaps = 22/131 (16%)
 Frame = +3

Query: 447 KMVTVAWRKICADYEEGGLGVKSLICLNEATNLKICWNLMQSDEQWANIIR-SRVIRDH- 504
           K+V V+W K+C   +EG LG++SL  LNEA NLK+CW++M S EQW   +R +R +  H 
Sbjct: 255 KVVKVSWEKVCRPIKEGSLGIRSLSKLNEALNLKLCWDMMISKEQWYAFMRHNRALLGHI 434

Query: 505 --RC--------MNHH------ISSSIWSG----VKAEFHVIKDNCSWIVGDGKQINFWS 544
              C          HH      +S  IW      +   FH+   +  W + D +++   +
Sbjct: 435 DFMCSLCFKSFESTHHLFFECSVSVQIWDWFSNLINLNFHINNTDDLWRICD-REVGAAN 611

Query: 545 DSWCGQVLAQT 555
            SW   +L+ T
Sbjct: 612 VSWLSLLLSST 644


>BQ148771 
          Length = 680

 Score = 65.9 bits (159), Expect = 4e-11
 Identities = 40/160 (25%), Positives = 78/160 (48%), Gaps = 10/160 (6%)
 Frame = -3

Query: 383 KVKAKLAKWKASLLSIAGRIQLVKSVVQSMLVHTMSIYSWPIKILKEMEKWIKNFIWSGD 442
           +V   LA WKA+ LS+A R+ L KSV++++ ++ M     P   ++E++K  + F+W   
Sbjct: 588 QVHVMLANWKANHLSLARRVTLAKSVIEAVPLYPMMTTIIPKACIEEIQKLQRKFVWGDT 409

Query: 443 VTKRKMVTVAWRKICADYEEGGLGVKSLICLNEATNLKICWNLMQ-SDEQWANIIRSRVI 501
              R+   V W  +       GLG++ L  +N+A  +K+ W++   S+     ++R +  
Sbjct: 408 EVSRRYHAVGWETMSKPKTIYGLGLRRLDVMNKACIMKLGWSIYSGSNSLCTEVMRGKYQ 229

Query: 502 RDHRC----MNHHISSSIWSGV-----KAEFHVIKDNCSW 532
           R        +     SS+W  +     + E +++  N +W
Sbjct: 228 RSESLEEIFLEKPTDSSLWKALVKLWPEIERNLVDSNGNW 109


>BE248682 similar to GP|18568269|gb putative gag-pol polyprotein {Zea mays},
           partial (1%)
          Length = 441

 Score = 61.2 bits (147), Expect = 1e-09
 Identities = 37/123 (30%), Positives = 54/123 (43%)
 Frame = +3

Query: 244 RGVRQGDPLSPLLFCIVEEVLSRSISILADKGLIDLIAASRNNCLPFHCFYVDDLMVFCK 303
           RG++QGDPL+P LF +V E +S  +    ++ L       R      H  Y DD +    
Sbjct: 24  RGLKQGDPLAPFLFLLVAEGISGLMKNAVNRNLFQGFDVKRGGTRVSHLQYADDTLCIGM 203

Query: 304 AKMSSLIVLKSLFTRYADCSGQIMNIRKSFIFAGGITDTRMNNIVNILGFNVGSLPFTYL 363
             + +L  LK+L   +   SG  +N  KS +    +    M      L     S+PF YL
Sbjct: 204 PTVDNLWTLKALLQGFEMASGLKVNFHKSSLIGINVPRDFMEAACRFLNCREESIPFIYL 383

Query: 364 GAP 366
           G P
Sbjct: 384 GLP 392


>BG647708 weakly similar to GP|13786450|gb| putative reverse transcriptase
           {Oryza sativa}, partial (9%)
          Length = 708

 Score = 58.2 bits (139), Expect = 8e-09
 Identities = 32/115 (27%), Positives = 57/115 (48%), Gaps = 1/115 (0%)
 Frame = +1

Query: 244 RGVRQGDPLSPLLFCIVEEVLSRSISILADKGLIDLIAASRNNCLPFHCFYVDDLMVFCK 303
           +G+RQGDPLSP LF +   VLS  +    +K  +  I  +R++    H  + DD ++F +
Sbjct: 10  KGLRQGDPLSPYLFILCANVLSGLLKREGNKQNLHGIQVARSDPKITHLLFADDSLLFAR 189

Query: 304 AKMSSLIVLKSLFTRYADCSGQIMNIRKSFI-FAGGITDTRMNNIVNILGFNVGS 357
           A ++    +  +   Y   SGQ++N  KS + ++  + +     I   +    GS
Sbjct: 190 ANLTEAATIMQVLHSYQSASGQLVNFEKSEVSYSQNVPNQEKEMICQQIAIKTGS 354


>BG582960 
          Length = 852

 Score = 53.5 bits (127), Expect = 2e-07
 Identities = 32/62 (51%), Positives = 38/62 (60%)
 Frame = +3

Query: 167 LTSEAINVLDNKSFGGNLALKIDVTKAFDTLNWDFLLLVLKTFGFNELFCNWIKTILHSS 226
           L  E IN LD K   GNLALKI + KA D L  +FLL VLK F F  +F N  K+IL+  
Sbjct: 51  LILEEINFLDKKILRGNLALKITMRKALDNLV*EFLLNVLKPFVFKHIFYN*NKSILNCV 230

Query: 227 KM 228
           K+
Sbjct: 231 KL 236


>TC90516 
          Length = 983

 Score = 48.1 bits (113), Expect = 9e-06
 Identities = 39/137 (28%), Positives = 64/137 (46%)
 Frame = -2

Query: 36  NRLLTMLPTKEEVKNAVFDLNSDDAPGPDVFGACFFQIYWNIVKKDVYEAVLDFFKNGWL 95
           N LL+      +++  V  L+ +++P PD F   FF    N++K D+      F+    L
Sbjct: 541 NVLLSAQFLVSKMELVVSSLDGNESPRPDGFNLNFFIRLRNMLKADIEIMFEQFYTPANL 362

Query: 96  PNNFNANSIILIPKTPNADSVDQYRTIALVNFKFKIINKVLADRLAKILPSIISKEQRGF 155
              F+   + LI K      +  +  ++ +    K++ KVLA RLA I+  II   Q  F
Sbjct: 361 LKIFS*YFLTLISKVEYPILLGDFSLMSFLGSL*KLMAKVLALRLAHIMEKIIFVNQSTF 182

Query: 156 VQGRNIRDCIALTSEAI 172
           V+GR   D +   +E I
Sbjct: 181 VRGRQHVDGVVAINEII 131


>TC87634 
          Length = 677

 Score = 39.7 bits (91), Expect(2) = 1e-04
 Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +3

Query: 384 VKAKLAKWKASLLSIAGR-IQLVKSVVQSMLVHTMSIYSWPIKILKEMEKWIKNFI 438
           ++AK   WK SLLSI      L   +       T +   WPI +LK M+ WI+NFI
Sbjct: 396 IRAKNLAWKGSLLSILWEESNLFDQLFIVCWCTTFACILWPISLLKIMDSWIRNFI 563



 Score = 23.9 bits (50), Expect(2) = 1e-04
 Identities = 10/15 (66%), Positives = 11/15 (72%)
 Frame = +1

Query: 366 PIFKGKPKGIHFQPI 380
           PIFKG P  I+ QPI
Sbjct: 343 PIFKGMP*PIYLQPI 387


>AW736247 weakly similar to PIR|T14619|T146 reverse transcriptase - beet
           retrotransposon (fragment), partial (4%)
          Length = 305

 Score = 43.5 bits (101), Expect = 2e-04
 Identities = 21/54 (38%), Positives = 32/54 (58%), Gaps = 2/54 (3%)
 Frame = +1

Query: 44  TKEEVKNAVFDLNSDDA--PGPDVFGACFFQIYWNIVKKDVYEAVLDFFKNGWL 95
           ++EEV+ AV+D +S  +  PGPD     F + YW ++K D    V++F  NG L
Sbjct: 124 SEEEVRKAVWDCDSSHS*NPGPDGVNFTFVKEYWELIKVDFLRVVMEFHTNGKL 285


>TC81772 
          Length = 982

 Score = 37.0 bits (84), Expect = 0.020
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -2

Query: 510 HISSSIWSGVKAEFHVIKDNCSWIVGDGKQINFWSDSW 547
           H  S IW  V     V+++   W +GDG  IN W+D W
Sbjct: 711 HNPSYIWCSV*TLRMVLEEGHHWKIGDGSSINIWTDHW 598


>TC85550 homologue to SP|P28002|COMT_MEDSA Caffeic acid 3-O-methyltransferase
            (EC 2.1.1.68), complete
          Length = 1541

 Score = 33.9 bits (76), Expect = 0.17
 Identities = 11/44 (25%), Positives = 28/44 (63%)
 Frame = +1

Query: 1    MWFLLIKTCFFLLTIFLQDHLLVEEAIPKLVDATTNRLLTMLPT 44
            +WF L+++C+ ++ +  ++H      +PK++D+  ++ + ML T
Sbjct: 1039 VWFTLMQSCWLIIQVGKREHRKSLRILPKVLDSKVSKFIVMLST 1170


>TC91765 weakly similar to GP|19881779|gb|AAM01180.1 Putative retroelement
           {Oryza sativa (japonica cultivar-group)}, partial (1%)
          Length = 625

 Score = 29.3 bits (64), Expect(2) = 0.40
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = +2

Query: 243 NRGVRQGDPLSPLLFCIVEEVLSRSISILADKG 275
           +RG++QGD LSP +F I  E LS  I    ++G
Sbjct: 167 SRGLQQGDHLSPYIFIICVEGLSFLIPHAKERG 265



 Score = 21.9 bits (45), Expect(2) = 0.40
 Identities = 7/30 (23%), Positives = 18/30 (59%)
 Frame = +1

Query: 190 VTKAFDTLNWDFLLLVLKTFGFNELFCNWI 219
           ++K ++ ++ D+L  ++   GFN  +  W+
Sbjct: 7   ISKVYNRVD*DYLKEIMIKMGFNNRWIYWM 96


>TC80819 weakly similar to GP|10140689|gb|AAG13524.1 putative non-LTR
           retroelement reverse transcriptase {Oryza sativa
           (japonica cultivar-group)}, partial (2%)
          Length = 1262

 Score = 32.3 bits (72), Expect = 0.49
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 527 KDNCSWIVGDGKQINFWSDSWCGQV 551
           ++N   +VGDG+   FW D+W G V
Sbjct: 243 EENIRMVVGDGRDAFFWYDTWAGDV 317


>TC82754 homologue to GP|18181865|emb|CAD20127. raffinose synthase {Pisum
           sativum}, partial (64%)
          Length = 1687

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = -2

Query: 153 RGFVQGRNIRDCIALTSEAINVLDNKSFGGNLALKIDVTKAFDTLNW 199
           R F Q  + R+C+ LT++   +  NKSF     L+I +T     +NW
Sbjct: 948 RVFKQAISCRECVMLTTQDRTIRQNKSF---KQLEIVITDTIANINW 817


>TC86802 similar to GP|7939577|dbj|BAA95778.1 ATP-dependent RNA helicase
           {Arabidopsis thaliana}, partial (52%)
          Length = 2777

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 8/33 (24%), Positives = 22/33 (66%)
 Frame = -3

Query: 270 ILADKGLIDLIAASRNNCLPFHCFYVDDLMVFC 302
           + +   ++ L+++SRN C  + C++++  +V+C
Sbjct: 657 LCSPNNILPLMSSSRNTCFLYRCWFLESQLVYC 559


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.326    0.140    0.440 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,631,709
Number of Sequences: 36976
Number of extensions: 326160
Number of successful extensions: 2201
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 2176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2199
length of query: 555
length of database: 9,014,727
effective HSP length: 101
effective length of query: 454
effective length of database: 5,280,151
effective search space: 2397188554
effective search space used: 2397188554
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 61 (28.1 bits)


Medicago: description of AC149134.1