BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC149130.2 + phase: 0
(239 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC87224 weakly similar to GP|14532856|gb|AAK64110.1 unknown prot... 447 e-126
TC92885 weakly similar to GP|14532856|gb|AAK64110.1 unknown prot... 110 6e-25
BI265486 similar to GP|9759232|dbj protein kinase-like protein {... 29 1.8
CB892104 28 3.1
BF638363 GP|14091176|gb Pqi5 {Salmonella typhimurium}, partial (6%) 27 9.1
TC90556 similar to GP|19310645|gb|AAL85053.1 unknown protein {Ar... 27 9.1
TC85738 similar to GP|6091551|gb|AAF01764.2| homeodomain-leucine... 27 9.1
TC76377 homologue to PIR|S12206|S12206 hypothetical protein 2 (r... 27 9.1
AI974465 27 9.1
>TC87224 weakly similar to GP|14532856|gb|AAK64110.1 unknown protein
{Arabidopsis thaliana}, partial (31%)
Length = 1760
Score = 447 bits (1150), Expect = e-126
Identities = 222/239 (92%), Positives = 231/239 (95%)
Frame = +1
Query: 1 MKRDEEPEAKKNLDEKMKNVEVKETALANTEAHVTRHIPPYNSSATTPQEAYVLDKIILA 60
M DEEPEAKKNLDEKMKNVEVKETALANTEAHVTRHIPPYNSSATTPQEAYVLDKIILA
Sbjct: 703 MTADEEPEAKKNLDEKMKNVEVKETALANTEAHVTRHIPPYNSSATTPQEAYVLDKIILA 882
Query: 61 EEWNYLQDIYYSLQKEVAADFSLYPSFIRNRINRLKKIEDDSEKKKLSCILSFINYLVKF 120
+EWNYLQDIYYSLQKE AA+FSLYPSFIRNRINRLKKIEDDSEKKKLSCIL FINYLVKF
Sbjct: 883 DEWNYLQDIYYSLQKEEAANFSLYPSFIRNRINRLKKIEDDSEKKKLSCILLFINYLVKF 1062
Query: 121 KDQHSMDGISSSKFEKLPYTLYHRFTTMFDVTESRRLPPEKMNLLISYVLVLTLFSDDFR 180
KDQHSMDGISSSKFEKLPYTL+HRFT MFDV+ESRRLPPEK+NLLISYVLVLTLFSDDFR
Sbjct: 1063KDQHSMDGISSSKFEKLPYTLHHRFTAMFDVSESRRLPPEKLNLLISYVLVLTLFSDDFR 1242
Query: 181 TDYRDIVKDLRMSTLTLRPIFEHLGCKFISSQKVSYATLPIPLTFSQIKKRKRKNKNKL 239
TDYRDI KDLRM+TLTLRPIFEHLGCK ISSQKVSYATLPIPLTF QI++RK+KNKNKL
Sbjct: 1243TDYRDIAKDLRMTTLTLRPIFEHLGCKLISSQKVSYATLPIPLTFPQIRQRKKKNKNKL 1419
>TC92885 weakly similar to GP|14532856|gb|AAK64110.1 unknown protein
{Arabidopsis thaliana}, partial (13%)
Length = 707
Score = 110 bits (274), Expect = 6e-25
Identities = 53/53 (100%), Positives = 53/53 (100%)
Frame = +2
Query: 1 MKRDEEPEAKKNLDEKMKNVEVKETALANTEAHVTRHIPPYNSSATTPQEAYV 53
MKRDEEPEAKKNLDEKMKNVEVKETALANTEAHVTRHIPPYNSSATTPQEAYV
Sbjct: 521 MKRDEEPEAKKNLDEKMKNVEVKETALANTEAHVTRHIPPYNSSATTPQEAYV 679
>BI265486 similar to GP|9759232|dbj protein kinase-like protein {Arabidopsis
thaliana}, partial (41%)
Length = 645
Score = 28.9 bits (63), Expect = 1.8
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Frame = +1
Query: 84 YPSFIRNRINRLKKIEDDSEKKKLSCILSFINY----LVKFKDQHSMDGISSSKFEKLPY 139
+PS I++ + L +DD KK+ + F Y L + S D I S EK P
Sbjct: 31 WPSHIKSNHHNLSDNDDDGSKKQKDSSVGFAEYSLDQLRVATEGFSSDNIVSEHGEKAPN 210
Query: 140 TLY 142
+Y
Sbjct: 211 VVY 219
>CB892104
Length = 560
Score = 28.1 bits (61), Expect = 3.1
Identities = 26/109 (23%), Positives = 44/109 (39%), Gaps = 6/109 (5%)
Frame = +1
Query: 5 EEPEAKKNLDEKMKNVEVKETALANTEAHVTRHIPPYNSSATTPQEAYVLDKIILAEEWN 64
E P+ K+ LD+ + E+ + + H S T ++ ++ E++
Sbjct: 142 ENPQEKEKLDDDDNSKEMMKLKIV--------HESSTKSGEETETSSFKQEQFEKVEDYT 297
Query: 65 YL-QDIYYSLQKEVAADFS-----LYPSFIRNRINRLKKIEDDSEKKKL 107
D+ S KE+ D S L+PS R+N K + D E K L
Sbjct: 298 GGGSDVESSRSKEIKRDESSGDDELHPSISPTRLNSANKSKTDEETKHL 444
>BF638363 GP|14091176|gb Pqi5 {Salmonella typhimurium}, partial (6%)
Length = 219
Score = 26.6 bits (57), Expect = 9.1
Identities = 13/44 (29%), Positives = 22/44 (49%), Gaps = 1/44 (2%)
Frame = +3
Query: 134 FEKLPYTLYHRFTTMFDVT-ESRRLPPEKMNLLISYVLVLTLFS 176
F + P HR T + +R PP L+ + V+++T+FS
Sbjct: 60 FRRTPNNFQHRLRACLSRT*KLKRYPPAMGALMFALVVIMTMFS 191
>TC90556 similar to GP|19310645|gb|AAL85053.1 unknown protein {Arabidopsis
thaliana}, partial (85%)
Length = 708
Score = 26.6 bits (57), Expect = 9.1
Identities = 15/43 (34%), Positives = 24/43 (54%)
Frame = -1
Query: 74 QKEVAADFSLYPSFIRNRINRLKKIEDDSEKKKLSCILSFINY 116
+K++A L+P + RI+ + KIE+ + SCI INY
Sbjct: 261 KKKLAT*L*LFPELFQFRISHILKIENVN*TVFFSCISYSINY 133
>TC85738 similar to GP|6091551|gb|AAF01764.2| homeodomain-leucine zipper
protein 56 {Glycine max}, partial (77%)
Length = 2144
Score = 26.6 bits (57), Expect = 9.1
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = +1
Query: 53 VLDKIILAEEWNYLQDIYYS 72
+L K +L + WN+++DIYYS
Sbjct: 2074 ILMKTLL*KFWNWVKDIYYS 2133
>TC76377 homologue to PIR|S12206|S12206 hypothetical protein 2 (rRNA
external transcribed spacer) - mouse, partial (21%)
Length = 1409
Score = 26.6 bits (57), Expect = 9.1
Identities = 11/36 (30%), Positives = 18/36 (49%)
Frame = -1
Query: 4 DEEPEAKKNLDEKMKNVEVKETALANTEAHVTRHIP 39
++ KN + M+ V+ + ANT H T H+P
Sbjct: 209 EDTKSTMKNDQDHMQTVQSQSIEPANTNIHATTHMP 102
>AI974465
Length = 391
Score = 26.6 bits (57), Expect = 9.1
Identities = 11/36 (30%), Positives = 18/36 (49%)
Frame = -2
Query: 4 DEEPEAKKNLDEKMKNVEVKETALANTEAHVTRHIP 39
++ KN + M+ V+ + ANT H T H+P
Sbjct: 219 EDTKSTMKNDQDHMQTVQSQSIEPANTNIHATTHMP 112
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.319 0.134 0.377
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,661,819
Number of Sequences: 36976
Number of extensions: 87380
Number of successful extensions: 535
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 535
length of query: 239
length of database: 9,014,727
effective HSP length: 93
effective length of query: 146
effective length of database: 5,575,959
effective search space: 814090014
effective search space used: 814090014
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)
Medicago: description of AC149130.2