BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC149080.4 + phase: 0
(79 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC77625 homologue to PIR|T07801|T07801 probable inorganic pyroph... 69 3e-13
TC84212 weakly similar to GP|21554128|gb|AAM63208.1 unknown {Ara... 27 1.4
BQ751004 26 2.4
TC88378 similar to GP|18086484|gb|AAL57695.1 At1g07280/F22G5_32 ... 25 4.2
AW695001 PIR|T14004|T1 trfA protein - slime mold (Dictyostelium ... 25 5.5
TC84633 similar to PIR|T49099|T49099 dihydrolipoamide S-acetyltr... 25 5.5
TC89395 homologue to GP|22854470|gb|AAN09687.1 NADH dehydrogenas... 25 7.1
BE204086 weakly similar to GP|8778726|gb| T25N20.14 {Arabidopsis... 25 7.1
BQ150150 24 9.3
AW774880 similar to PIR|T47879|T47 hypothetical protein T4C21.90... 24 9.3
>TC77625 homologue to PIR|T07801|T07801 probable inorganic pyrophosphatase
(EC 3.6.1.1) - mung bean, partial (59%)
Length = 1511
Score = 69.3 bits (168), Expect = 3e-13
Identities = 36/47 (76%), Positives = 38/47 (80%)
Frame = +3
Query: 22 LSMKITTYVNARTTLEARKGKRKSSAVAFRSGAVKGFLLAANGLLLL 68
L MKI TY NARTTLEARKG K+ AFRSGAV GFLLAANGLL+L
Sbjct: 603 LGMKIATYANARTTLEARKGVGKAFITAFRSGAVMGFLLAANGLLVL 743
>TC84212 weakly similar to GP|21554128|gb|AAM63208.1 unknown {Arabidopsis
thaliana}, partial (27%)
Length = 681
Score = 26.9 bits (58), Expect = 1.4
Identities = 16/35 (45%), Positives = 20/35 (56%)
Frame = +1
Query: 34 TTLEARKGKRKSSAVAFRSGAVKGFLLAANGLLLL 68
TTL K + V +S +VK +LL AN LLLL
Sbjct: 361 TTLAELGLKDAAKLVELQSSSVKPYLLKANALLLL 465
>BQ751004
Length = 483
Score = 26.2 bits (56), Expect = 2.4
Identities = 14/36 (38%), Positives = 20/36 (54%)
Frame = +1
Query: 43 RKSSAVAFRSGAVKGFLLAANGLLLLSLIPISITWT 78
R++ A AF + +L +A +L SL ISI WT
Sbjct: 79 RRALAPAFSFSHLSRYLSSALAMLAFSLSSISIRWT 186
>TC88378 similar to GP|18086484|gb|AAL57695.1 At1g07280/F22G5_32
{Arabidopsis thaliana}, partial (38%)
Length = 1687
Score = 25.4 bits (54), Expect = 4.2
Identities = 17/57 (29%), Positives = 29/57 (50%)
Frame = -3
Query: 19 DIKLSMKITTYVNARTTLEARKGKRKSSAVAFRSGAVKGFLLAANGLLLLSLIPISI 75
++KLS K++ + A +LE + KSS S + K A LL+ L+P+ +
Sbjct: 608 EVKLSSKLSKSIIALFSLEIWNLRAKSSIFFANSSSEKNESKLALKALLIVLLPLLV 438
>AW695001 PIR|T14004|T1 trfA protein - slime mold (Dictyostelium discoideum),
partial (1%)
Length = 609
Score = 25.0 bits (53), Expect = 5.5
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +1
Query: 5 SGCCLLIITLKQTSDIKLSM 24
SG CLLIIT++ T+ K +M
Sbjct: 421 SGICLLIITIQNTTCTKKTM 480
>TC84633 similar to PIR|T49099|T49099 dihydrolipoamide S-acetyltransferase
precursor - Arabidopsis thaliana, partial (35%)
Length = 928
Score = 25.0 bits (53), Expect = 5.5
Identities = 17/67 (25%), Positives = 33/67 (48%)
Frame = -1
Query: 3 RVSGCCLLIITLKQTSDIKLSMKITTYVNARTTLEARKGKRKSSAVAFRSGAVKGFLLAA 62
R + L+I++ +T +T+Y + R+ L R+G +S ++ G F L +
Sbjct: 190 RAAATTLIIMSFTET--------LTSYCSLRSFLRERRGSSVTSDDKYKCGV---FCLDS 44
Query: 63 NGLLLLS 69
N LL ++
Sbjct: 43 NNLLAIT 23
>TC89395 homologue to GP|22854470|gb|AAN09687.1 NADH dehydrogenase
{Chaptalia lyratifolia}, partial (5%)
Length = 735
Score = 24.6 bits (52), Expect = 7.1
Identities = 15/53 (28%), Positives = 26/53 (48%), Gaps = 9/53 (16%)
Frame = -1
Query: 33 RTTLEARKGKRKSSAVAFRSGAVKG---------FLLAANGLLLLSLIPISIT 76
+T L +R RK A + G + FLL + +L++ +IPI++T
Sbjct: 681 QTLLTSRPNSRKLGATSLEIGGLTHKIIQNKNPLFLLHQSQILMMMIIPINLT 523
>BE204086 weakly similar to GP|8778726|gb| T25N20.14 {Arabidopsis thaliana},
partial (2%)
Length = 531
Score = 24.6 bits (52), Expect = 7.1
Identities = 11/23 (47%), Positives = 15/23 (64%)
Frame = -2
Query: 7 CCLLIITLKQTSDIKLSMKITTY 29
CCL+I TLK + KLS K ++
Sbjct: 278 CCLII*TLKFNQEPKLSTKSRSF 210
>BQ150150
Length = 1100
Score = 24.3 bits (51), Expect = 9.3
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +3
Query: 3 RVSGCCLLIITLKQTSDIKLSMKITTYVNARTTLEARKGKRKSSA 47
R S LL++T +SDI + ++ +A T +R + +SSA
Sbjct: 525 RASSTSLLLLTSLSSSDIVVRVQRNVGTDAEVTPLSRTTRHESSA 659
>AW774880 similar to PIR|T47879|T47 hypothetical protein T4C21.90 -
Arabidopsis thaliana, partial (25%)
Length = 576
Score = 24.3 bits (51), Expect = 9.3
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +2
Query: 12 ITLKQTSDIKLSMKITTYVNARTTLEARKGKRKSSAVAFRS-GAVKGFLLAANGL 65
+TLK + K TT +N L ++KG + + +++ G +GF L + GL
Sbjct: 2 LTLKPKPSNSSTTKKTTSMNPMVFLSSKKGHNQYALLSYVCLGMFQGFDLVSFGL 166
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.325 0.135 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,485,913
Number of Sequences: 36976
Number of extensions: 21587
Number of successful extensions: 168
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of query: 79
length of database: 9,014,727
effective HSP length: 55
effective length of query: 24
effective length of database: 6,981,047
effective search space: 167545128
effective search space used: 167545128
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.3 bits)
Medicago: description of AC149080.4