TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC149039.1 + phase: 0 /pseudo
         (434 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

CB065285 weakly similar to PIR|A84500|A84 probable retroelement ...    56  2e-08
TC92152 weakly similar to PIR|G86266|G86266 hypothetical protein...    33  0.21
TC86420 similar to PIR|S71223|S71223 xyloglucan endo-1 4-beta-D-...    28  6.9
BG449406 similar to PIR|T04629|T04 hypothetical protein F10N7.30...    28  9.0

>CB065285 weakly similar to PIR|A84500|A84 probable retroelement gag/pol
          polyprotein [imported] - Arabidopsis thaliana, partial
          (2%)
          Length = 592

 Score = 56.2 bits (134), Expect = 2e-08
 Identities = 27/29 (93%), Positives = 27/29 (93%)
 Frame = -3

Query: 1  MCLLLGM*SIRLAKMWLTINPGTTTSNSS 29
          MCLLLGM*SIR  KMWLTINPGTTTSNSS
Sbjct: 92 MCLLLGM*SIRPVKMWLTINPGTTTSNSS 6


>TC92152 weakly similar to PIR|G86266|G86266 hypothetical protein AAD31075.1
           [imported] - Arabidopsis thaliana, partial (5%)
          Length = 645

 Score = 33.1 bits (74), Expect = 0.21
 Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
 Frame = -2

Query: 177 LTTSPSGLKQHLIPM*PSKW*LSSSRTTSYVDMVFPARLLPTMVQT*ITMW----CKLFV 232
           LTTSP  L+         KW LS++R +      F  R +     + I+ W    C LFV
Sbjct: 224 LTTSPQSLQFLSFSTSARKWFLSATRRSRSF-FTFWLRFISISESSCISRWSDFSCCLFV 48

Query: 233 KNSKLSIITLLPIDL 247
            +S LS   L+P DL
Sbjct: 47  SSSFLSFSNLIPSDL 3


>TC86420 similar to PIR|S71223|S71223 xyloglucan endo-1 4-beta-D-glucanase (EC
            3.2.1.-) XTR-4 - Arabidopsis thaliana (fragment), partial
            (76%)
          Length = 1328

 Score = 28.1 bits (61), Expect = 6.9
 Identities = 11/30 (36%), Positives = 15/30 (49%)
 Frame = -1

Query: 283  MATVLPCAVQPGQPLSLLYMVWKQFFLWKW 312
            M+ V P  +QP   L  L++ W    LW W
Sbjct: 1034 MSAVAPTKLQPSGLLKPLFLRWNNITLWWW 945


>BG449406 similar to PIR|T04629|T04 hypothetical protein F10N7.30 -
           Arabidopsis thaliana, partial (19%)
          Length = 684

 Score = 27.7 bits (60), Expect = 9.0
 Identities = 15/47 (31%), Positives = 20/47 (41%)
 Frame = +3

Query: 89  VPSGPMLQGILCQGSCYGQVTTGWPWSMIATSTPESATNVKSMLIRF 135
           VP G +    L   SC  Q      W  +   +PE  TN+  +L RF
Sbjct: 318 VPVGVIAS*YLLGSSCQNQRIQIL*WLQVGIQSPEGITNIHGVLRRF 458


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.354    0.153    0.564 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,872,621
Number of Sequences: 36976
Number of extensions: 224725
Number of successful extensions: 2594
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1385
Number of HSP's successfully gapped in prelim test: 101
Number of HSP's that attempted gapping in prelim test: 1177
Number of HSP's gapped (non-prelim): 1540
length of query: 434
length of database: 9,014,727
effective HSP length: 99
effective length of query: 335
effective length of database: 5,354,103
effective search space: 1793624505
effective search space used: 1793624505
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.6 bits)
S2: 60 (27.7 bits)