BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148996.1 - phase: 0
(141 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC76621 homologue to SP|O22582|H2B_GOSHI Histone H2B. [Upland co... 58 1e-09
TC76615 homologue to SP|O22582|H2B_GOSHI Histone H2B. [Upland co... 56 4e-09
TC76617 homologue to SP|O22582|H2B_GOSHI Histone H2B. [Upland co... 56 4e-09
TC76623 homologue to SP|O22582|H2B_GOSHI Histone H2B. [Upland co... 56 6e-09
TC76618 homologue to SP|O22582|H2B_GOSHI Histone H2B. [Upland co... 56 6e-09
TC76622 homologue to SP|O22582|H2B_GOSHI Histone H2B. [Upland co... 56 6e-09
TC76616 homologue to SP|O22582|H2B_GOSHI Histone H2B. [Upland co... 56 6e-09
TC76620 homologue to SP|O22582|H2B_GOSHI Histone H2B. [Upland co... 56 6e-09
TC76619 homologue to SP|O22582|H2B_GOSHI Histone H2B. [Upland co... 56 6e-09
TC87464 homologue to GP|7635498|emb|CAB88668.1 histone H2B {Cice... 54 3e-08
TC80332 similar to PIR|S11937|S11937 histone H2B - Emericella ni... 52 8e-08
BI270971 homologue to PIR|T06390|T06 histone H2B-3 - tomato (fra... 52 1e-07
TC90997 homologue to PIR|T06390|T06390 histone H2B-3 - tomato (f... 52 1e-07
TC91944 similar to PIR|S11937|S11937 histone H2B - Emericella ni... 50 2e-07
TC88505 homologue to SP|O22582|H2B_GOSHI Histone H2B. [Upland co... 50 2e-07
BG450237 homologue to SP|O22582|H2B_ Histone H2B. [Upland cotton... 49 7e-07
TC77286 SP|Q02735|CAPP_MEDSA Phosphoenolpyruvate carboxylase (EC... 33 0.050
TC80154 homologue to GP|3649778|emb|CAA09589.1 pepc2 {Vicia faba... 29 0.55
TC77596 similar to GP|18377702|gb|AAL67001.1 putative clathrin b... 26 4.7
TC92733 similar to PIR|H84731|H84731 hypothetical protein At2g32... 26 6.1
>TC76621 homologue to SP|O22582|H2B_GOSHI Histone H2B. [Upland cotton]
{Gossypium hirsutum}, partial (89%)
Length = 589
Score = 57.8 bits (138), Expect = 1e-09
Identities = 32/102 (31%), Positives = 61/102 (59%), Gaps = 6/102 (5%)
Frame = +2
Query: 4 KKGKNIILEVGSSSGTKRR-----TVE-FKKHIYRVAKKVHPDLDITVESIEMMNDIMND 57
K GK + E GS+SG K++ +VE +K +I++V K+VHPD+ I+ +++ +MN +ND
Sbjct: 137 KAGKKLPKESGSASGEKKKKRNKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFIND 316
Query: 58 MLHKIVEEVAKNVAALNQKLLVERDLWVGVKELYPKYLARCA 99
+ K+ +E ++ + + R++ V+ + P LA+ A
Sbjct: 317 IFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHA 442
>TC76615 homologue to SP|O22582|H2B_GOSHI Histone H2B. [Upland cotton]
{Gossypium hirsutum}, complete
Length = 685
Score = 56.2 bits (134), Expect = 4e-09
Identities = 29/101 (28%), Positives = 59/101 (57%), Gaps = 5/101 (4%)
Frame = +3
Query: 4 KKGKNIILEVGSSSGTKRRTVE-----FKKHIYRVAKKVHPDLDITVESIEMMNDIMNDM 58
K GK + E GS++G K++ + +K +I++V K+VHPD+ I+ +++ +MN +ND+
Sbjct: 171 KAGKKLPKEGGSAAGDKKKRSKKNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDI 350
Query: 59 LHKIVEEVAKNVAALNQKLLVERDLWVGVKELYPKYLARCA 99
K+ +E ++ + + R++ V+ + P LA+ A
Sbjct: 351 FEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHA 473
>TC76617 homologue to SP|O22582|H2B_GOSHI Histone H2B. [Upland cotton]
{Gossypium hirsutum}, complete
Length = 760
Score = 56.2 bits (134), Expect = 4e-09
Identities = 31/102 (30%), Positives = 61/102 (59%), Gaps = 6/102 (5%)
Frame = +3
Query: 4 KKGKNIILEVGSSSGTKRR-----TVE-FKKHIYRVAKKVHPDLDITVESIEMMNDIMND 57
K GK + E GS++G K++ +VE +K +I++V K+VHPD+ I+ +++ +MN +ND
Sbjct: 189 KAGKKLPKEGGSAAGEKKKKRSKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFIND 368
Query: 58 MLHKIVEEVAKNVAALNQKLLVERDLWVGVKELYPKYLARCA 99
+ K+ +E ++ + + R++ V+ + P LA+ A
Sbjct: 369 IFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHA 494
>TC76623 homologue to SP|O22582|H2B_GOSHI Histone H2B. [Upland cotton]
{Gossypium hirsutum}, complete
Length = 647
Score = 55.8 bits (133), Expect = 6e-09
Identities = 31/102 (30%), Positives = 60/102 (58%), Gaps = 6/102 (5%)
Frame = +3
Query: 4 KKGKNIILEVGSSSGTKRR-----TVE-FKKHIYRVAKKVHPDLDITVESIEMMNDIMND 57
K GK + E GS++G K++ VE +K +I++V K+VHPD+ I+ +++ +MN +ND
Sbjct: 168 KAGKKLPKEGGSAAGDKKKKRSKKNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFIND 347
Query: 58 MLHKIVEEVAKNVAALNQKLLVERDLWVGVKELYPKYLARCA 99
+ K+ +E ++ + + R++ V+ + P LA+ A
Sbjct: 348 IFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHA 473
>TC76618 homologue to SP|O22582|H2B_GOSHI Histone H2B. [Upland cotton]
{Gossypium hirsutum}, complete
Length = 755
Score = 55.8 bits (133), Expect = 6e-09
Identities = 31/102 (30%), Positives = 60/102 (58%), Gaps = 6/102 (5%)
Frame = +2
Query: 4 KKGKNIILEVGSSSGTKRR-----TVE-FKKHIYRVAKKVHPDLDITVESIEMMNDIMND 57
K GK + E GS++G K++ VE +K +I++V K+VHPD+ I+ +++ +MN +ND
Sbjct: 158 KAGKKLPKEGGSAAGEKKKKRSKKNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFIND 337
Query: 58 MLHKIVEEVAKNVAALNQKLLVERDLWVGVKELYPKYLARCA 99
+ K+ +E ++ + + R++ V+ + P LA+ A
Sbjct: 338 IFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHA 463
>TC76622 homologue to SP|O22582|H2B_GOSHI Histone H2B. [Upland cotton]
{Gossypium hirsutum}, complete
Length = 904
Score = 55.8 bits (133), Expect = 6e-09
Identities = 31/102 (30%), Positives = 60/102 (58%), Gaps = 6/102 (5%)
Frame = +2
Query: 4 KKGKNIILEVGSSSGTKRR-----TVE-FKKHIYRVAKKVHPDLDITVESIEMMNDIMND 57
K GK + E GS++G K++ VE +K +I++V K+VHPD+ I+ +++ +MN +ND
Sbjct: 170 KAGKKLPKEGGSAAGDKKKKRSKKNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFIND 349
Query: 58 MLHKIVEEVAKNVAALNQKLLVERDLWVGVKELYPKYLARCA 99
+ K+ +E ++ + + R++ V+ + P LA+ A
Sbjct: 350 IFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHA 475
>TC76616 homologue to SP|O22582|H2B_GOSHI Histone H2B. [Upland cotton]
{Gossypium hirsutum}, complete
Length = 698
Score = 55.8 bits (133), Expect = 6e-09
Identities = 31/102 (30%), Positives = 60/102 (58%), Gaps = 6/102 (5%)
Frame = +3
Query: 4 KKGKNIILEVGSSSGTKRR-----TVE-FKKHIYRVAKKVHPDLDITVESIEMMNDIMND 57
K GK + E GS++G K++ VE +K +I++V K+VHPD+ I+ +++ +MN +ND
Sbjct: 180 KAGKKLPKEGGSAAGDKKKKRSKKNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFIND 359
Query: 58 MLHKIVEEVAKNVAALNQKLLVERDLWVGVKELYPKYLARCA 99
+ K+ +E ++ + + R++ V+ + P LA+ A
Sbjct: 360 IFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHA 485
>TC76620 homologue to SP|O22582|H2B_GOSHI Histone H2B. [Upland cotton]
{Gossypium hirsutum}, complete
Length = 718
Score = 55.8 bits (133), Expect = 6e-09
Identities = 31/102 (30%), Positives = 60/102 (58%), Gaps = 6/102 (5%)
Frame = +2
Query: 4 KKGKNIILEVGSSSGTKRR-----TVE-FKKHIYRVAKKVHPDLDITVESIEMMNDIMND 57
K GK + E GS++G K++ VE +K +I++V K+VHPD+ I+ +++ +MN +ND
Sbjct: 131 KAGKKLPKEGGSAAGEKKKKRSKKNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFIND 310
Query: 58 MLHKIVEEVAKNVAALNQKLLVERDLWVGVKELYPKYLARCA 99
+ K+ +E ++ + + R++ V+ + P LA+ A
Sbjct: 311 IFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHA 436
>TC76619 homologue to SP|O22582|H2B_GOSHI Histone H2B. [Upland cotton]
{Gossypium hirsutum}, complete
Length = 718
Score = 55.8 bits (133), Expect = 6e-09
Identities = 31/102 (30%), Positives = 60/102 (58%), Gaps = 6/102 (5%)
Frame = +3
Query: 4 KKGKNIILEVGSSSGTKRR-----TVE-FKKHIYRVAKKVHPDLDITVESIEMMNDIMND 57
K GK + E GS++G K++ VE +K +I++V K+VHPD+ I+ +++ +MN +ND
Sbjct: 171 KAGKKLPKEGGSAAGDKKKKRSKKNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFIND 350
Query: 58 MLHKIVEEVAKNVAALNQKLLVERDLWVGVKELYPKYLARCA 99
+ K+ +E ++ + + R++ V+ + P LA+ A
Sbjct: 351 IFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHA 476
>TC87464 homologue to GP|7635498|emb|CAB88668.1 histone H2B {Cicer
arietinum}, complete
Length = 677
Score = 53.5 bits (127), Expect = 3e-08
Identities = 28/99 (28%), Positives = 57/99 (57%), Gaps = 4/99 (4%)
Frame = +3
Query: 5 KGKNIILEVGSSSGTKRRTVE----FKKHIYRVAKKVHPDLDITVESIEMMNDIMNDMLH 60
K + I + GSS K+RT + +K +I++V K+VHPD+ ++ +++ +MN +ND+
Sbjct: 132 KAEKKISKEGSSDKKKKRTKKSVETYKIYIFKVLKQVHPDIGVSSKAMGIMNSFINDIFE 311
Query: 61 KIVEEVAKNVAALNQKLLVERDLWVGVKELYPKYLARCA 99
K+ +E ++ + + R++ V+ + P LA+ A
Sbjct: 312 KLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHA 428
>TC80332 similar to PIR|S11937|S11937 histone H2B - Emericella nidulans,
partial (92%)
Length = 562
Score = 52.0 bits (123), Expect = 8e-08
Identities = 25/80 (31%), Positives = 45/80 (56%)
Frame = +3
Query: 20 KRRTVEFKKHIYRVAKKVHPDLDITVESIEMMNDIMNDMLHKIVEEVAKNVAALNQKLLV 79
K R + +IY+V K+VHPD I+ +++ +MN +ND+ +I E +K A + +
Sbjct: 156 KARKETYSSYIYKVLKQVHPDTGISNKAMSIMNSFVNDIFERIAAEASKLAAYNKRSTIS 335
Query: 80 ERDLWVGVKELYPKYLARCA 99
R++ V+ + P LA+ A
Sbjct: 336 SREIQTAVRLILPGELAKHA 395
>BI270971 homologue to PIR|T06390|T06 histone H2B-3 - tomato (fragment),
partial (94%)
Length = 441
Score = 51.6 bits (122), Expect = 1e-07
Identities = 28/101 (27%), Positives = 56/101 (54%), Gaps = 4/101 (3%)
Frame = +2
Query: 3 SKKGKNIILEVGSSSGTKRRTVE----FKKHIYRVAKKVHPDLDITVESIEMMNDIMNDM 58
+K K I E S+ K+R + +K +I++V K+VHPD+ I+ +++ +MN +ND+
Sbjct: 83 TKAEKKIPKEASSTDKKKKRNKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDI 262
Query: 59 LHKIVEEVAKNVAALNQKLLVERDLWVGVKELYPKYLARCA 99
K+ +E ++ + + R++ V+ + P LA+ A
Sbjct: 263 FEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHA 385
>TC90997 homologue to PIR|T06390|T06390 histone H2B-3 - tomato (fragment),
partial (94%)
Length = 665
Score = 51.6 bits (122), Expect = 1e-07
Identities = 28/101 (27%), Positives = 56/101 (54%), Gaps = 4/101 (3%)
Frame = +2
Query: 3 SKKGKNIILEVGSSSGTKRRTVE----FKKHIYRVAKKVHPDLDITVESIEMMNDIMNDM 58
+K K I E S+ K+R + +K +I++V K+VHPD+ I+ +++ +MN +ND+
Sbjct: 116 TKAEKKIPKEASSADKKKKRNKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDI 295
Query: 59 LHKIVEEVAKNVAALNQKLLVERDLWVGVKELYPKYLARCA 99
K+ +E ++ + + R++ V+ + P LA+ A
Sbjct: 296 FEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHA 418
>TC91944 similar to PIR|S11937|S11937 histone H2B - Emericella nidulans,
partial (79%)
Length = 772
Score = 50.4 bits (119), Expect = 2e-07
Identities = 29/100 (29%), Positives = 52/100 (52%), Gaps = 2/100 (2%)
Frame = +3
Query: 2 ASKKGKNIILEVGSSSGTKR--RTVEFKKHIYRVAKKVHPDLDITVESIEMMNDIMNDML 59
A KK + G + KR R + +IY+V K+VHPD I+ +++ ++N +ND+
Sbjct: 153 AEKKDSKKPVASGDKTKKKRKVRKETYSSYIYKVLKQVHPDTGISNKAMSILNSFVNDIF 332
Query: 60 HKIVEEVAKNVAALNQKLLVERDLWVGVKELYPKYLARCA 99
+I E +K A + + R++ V+ + P LA+ A
Sbjct: 333 ERISGEASKLAAYNKRSTISSREIQTAVRLILPGELAKHA 452
>TC88505 homologue to SP|O22582|H2B_GOSHI Histone H2B. [Upland cotton]
{Gossypium hirsutum}, partial (92%)
Length = 690
Score = 50.4 bits (119), Expect = 2e-07
Identities = 32/99 (32%), Positives = 59/99 (59%), Gaps = 4/99 (4%)
Frame = +1
Query: 5 KGKNIILEVGSSSGTKR--RTVE-FKKHIYRVAKKVHPDLDITVESIEMMNDIMNDMLHK 61
K + I + G KR ++VE +K +I++V K+VHPD+ I+ +++ +MN +ND+ K
Sbjct: 148 KAEKKISKEGGDKKKKRVKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEK 327
Query: 62 IVEEVAKNVAALNQK-LLVERDLWVGVKELYPKYLARCA 99
+ +E A +A N+K + R++ V+ + P LA+ A
Sbjct: 328 LAQE-ASRLARYNKKPTITSREIQTAVRLVLPGELAKHA 441
>BG450237 homologue to SP|O22582|H2B_ Histone H2B. [Upland cotton] {Gossypium
hirsutum}, partial (80%)
Length = 682
Score = 48.9 bits (115), Expect = 7e-07
Identities = 26/100 (26%), Positives = 55/100 (55%), Gaps = 6/100 (6%)
Frame = -2
Query: 4 KKGKNIILEVGSSSG------TKRRTVEFKKHIYRVAKKVHPDLDITVESIEMMNDIMND 57
K GK + E GS++G +K+ +K +I++V K+VHPD+ + +++ +MN +ND
Sbjct: 465 KAGKKLPKEGGSAAGDXKXKRSKKNVETYKIYIFKVLKQVHPDIGXSSKAMGIMNSFIND 286
Query: 58 MLHKIVEEVAKNVAALNQKLLVERDLWVGVKELYPKYLAR 97
+ K+ +E ++ + + R++ V+ + LA+
Sbjct: 285 IFXKLAQESSRLARYNKKXTITSREIQTXVRLVLXGELAK 166
>TC77286 SP|Q02735|CAPP_MEDSA Phosphoenolpyruvate carboxylase (EC 4.1.1.31)
(PEPCASE). [Alfalfa] {Medicago sativa}, partial (70%)
Length = 2283
Score = 32.7 bits (73), Expect = 0.050
Identities = 17/59 (28%), Positives = 32/59 (53%), Gaps = 9/59 (15%)
Frame = +2
Query: 45 VESIEMMNDIMN---------DMLHKIVEEVAKNVAALNQKLLVERDLWVGVKELYPKY 94
V+++ M+ ++ N D++ + + +AALN +LLV +DLW ++L KY
Sbjct: 1556 VKNLHMLQEMYNQWPFFRVTIDLVEMVFAKGDPGIAALNDRLLVSKDLWPFGEQLRSKY 1732
>TC80154 homologue to GP|3649778|emb|CAA09589.1 pepc2 {Vicia faba}, partial
(42%)
Length = 1186
Score = 29.3 bits (64), Expect = 0.55
Identities = 15/63 (23%), Positives = 32/63 (49%), Gaps = 9/63 (14%)
Frame = +1
Query: 41 LDITVESIEMMNDIMN---------DMLHKIVEEVAKNVAALNQKLLVERDLWVGVKELY 91
+D + +++M+ ++ N D++ + + +AAL +LLV DLW ++L
Sbjct: 403 IDKDIRNLQMLQEMYNQWPFFRVTIDLIEMVFAKGDPGIAALYDRLLVSNDLWSFGEQLR 582
Query: 92 PKY 94
K+
Sbjct: 583 TKF 591
>TC77596 similar to GP|18377702|gb|AAL67001.1 putative clathrin binding
protein {Arabidopsis thaliana}, partial (44%)
Length = 2019
Score = 26.2 bits (56), Expect = 4.7
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +3
Query: 89 ELYPKYLARCANLHAYFRRNFYETHRVGDLMARH 122
+L PK L + L +F +++ + R+GD+ RH
Sbjct: 264 QLLPKNLLNVSWL*MFFGQDWLKLERIGDMYTRH 365
>TC92733 similar to PIR|H84731|H84731 hypothetical protein At2g32340
[imported] - Arabidopsis thaliana, partial (22%)
Length = 667
Score = 25.8 bits (55), Expect = 6.1
Identities = 14/47 (29%), Positives = 27/47 (56%)
Frame = +3
Query: 39 PDLDITVESIEMMNDIMNDMLHKIVEEVAKNVAALNQKLLVERDLWV 85
P D ++ M+D +DML +++E++K L + L+ ERD ++
Sbjct: 99 PSSDDLNNMLKEMDD--SDMLTLVIQEMSKEFPTLMETLVHERDQYM 233
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.320 0.134 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,554,736
Number of Sequences: 36976
Number of extensions: 39525
Number of successful extensions: 206
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of query: 141
length of database: 9,014,727
effective HSP length: 86
effective length of query: 55
effective length of database: 5,834,791
effective search space: 320913505
effective search space used: 320913505
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)
Medicago: description of AC148996.1