BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148819.1 + phase: 0
(244 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC86249 similar to GP|11994560|dbj|BAB02600. 60S ribosomal prote... 489 e-139
TC86248 similar to GP|11994560|dbj|BAB02600. 60S ribosomal prote... 479 e-136
TC77462 similar to GP|11994560|dbj|BAB02600. 60S ribosomal prote... 431 e-121
BI264737 similar to PIR|D84422|D84 60S ribosomal protein L7 [imp... 296 4e-81
BG453094 weakly similar to GP|15450713|gb At2g44120/F6E13.25 {Ar... 272 1e-73
AW981052 similar to GP|15293877|gb ribosomal protein L7 {Ictalur... 240 4e-64
TC86149 weakly similar to GP|19570054|gb|AAL92346.1 hypothetical... 223 7e-59
TC86250 homologue to GP|11994560|dbj|BAB02600. 60S ribosomal pro... 80 5e-16
AL389514 similar to GP|20975622|emb putative ripening related pr... 58 4e-09
TC88462 52 3e-07
TC86112 homologue to GP|13878137|gb|AAK44146.1 unknown protein {... 29 1.4
BQ752428 similar to GP|18376167|emb hypothetical protein {Neuros... 29 1.9
TC87403 similar to PIR|T02212|T02212 NOI protein - rice, partial... 29 1.9
TC79642 similar to PIR|T07397|T07397 kinesin heavy chain-like pr... 28 2.4
CA922277 similar to PIR|T49191|T49 hypothetical protein MAA21.13... 28 3.2
TC80439 similar to GP|6063552|dbj|BAA85412.1 ESTs AU065232(E6085... 28 4.2
TC90982 weakly similar to GP|9758054|dbj|BAB08517.1 gene_id:MYC6... 28 4.2
TC79713 weakly similar to GP|21617966|gb|AAM67016.1 unknown {Ara... 27 5.5
TC79714 weakly similar to GP|21617966|gb|AAM67016.1 unknown {Ara... 27 5.5
TC90813 similar to GP|10177205|dbj|BAB10307. cellulose synthase ... 27 5.5
>TC86249 similar to GP|11994560|dbj|BAB02600. 60S ribosomal protein L7
{Arabidopsis thaliana}, partial (98%)
Length = 960
Score = 489 bits (1259), Expect = e-139
Identities = 244/244 (100%), Positives = 244/244 (100%)
Frame = +1
Query: 1 MAKEEVKTVVPESVLKKQKRNEEWALVKKQEQESAKKKRSETRKLIWSRAKQYAKEYDDS 60
MAKEEVKTVVPESVLKKQKRNEEWALVKKQEQESAKKKRSETRKLIWSRAKQYAKEYDDS
Sbjct: 67 MAKEEVKTVVPESVLKKQKRNEEWALVKKQEQESAKKKRSETRKLIWSRAKQYAKEYDDS 246
Query: 61 QKELIALKREAKLKGGFYVDPEAKLLFIIRIRGINAMDPKSRKILQLLRLRQICNGVFLK 120
QKELIALKREAKLKGGFYVDPEAKLLFIIRIRGINAMDPKSRKILQLLRLRQICNGVFLK
Sbjct: 247 QKELIALKREAKLKGGFYVDPEAKLLFIIRIRGINAMDPKSRKILQLLRLRQICNGVFLK 426
Query: 121 VNKATVNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKVDRQRIALTDNSIIEQVLGKHGI 180
VNKATVNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKVDRQRIALTDNSIIEQVLGKHGI
Sbjct: 427 VNKATVNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKVDRQRIALTDNSIIEQVLGKHGI 606
Query: 181 ICIEDLIHEILTVGPHFREANNFLWPFKLKAPLGGMKKKRNHYVEGGDAGNREDYINELI 240
ICIEDLIHEILTVGPHFREANNFLWPFKLKAPLGGMKKKRNHYVEGGDAGNREDYINELI
Sbjct: 607 ICIEDLIHEILTVGPHFREANNFLWPFKLKAPLGGMKKKRNHYVEGGDAGNREDYINELI 786
Query: 241 RRMN 244
RRMN
Sbjct: 787 RRMN 798
>TC86248 similar to GP|11994560|dbj|BAB02600. 60S ribosomal protein L7
{Arabidopsis thaliana}, partial (98%)
Length = 984
Score = 479 bits (1232), Expect = e-136
Identities = 238/244 (97%), Positives = 242/244 (98%)
Frame = +3
Query: 1 MAKEEVKTVVPESVLKKQKRNEEWALVKKQEQESAKKKRSETRKLIWSRAKQYAKEYDDS 60
M+KEEVKTVVPESVLKKQKRNEEWALVKKQEQESAKKKR++TRKLIWSRAKQYAKEYDD
Sbjct: 81 MSKEEVKTVVPESVLKKQKRNEEWALVKKQEQESAKKKRAQTRKLIWSRAKQYAKEYDDQ 260
Query: 61 QKELIALKREAKLKGGFYVDPEAKLLFIIRIRGINAMDPKSRKILQLLRLRQICNGVFLK 120
QKELI+LKREAKLKGGFYVDPEAKLLFIIRIRGINAMDPKSRKILQLLRLRQI NGVFLK
Sbjct: 261 QKELISLKREAKLKGGFYVDPEAKLLFIIRIRGINAMDPKSRKILQLLRLRQIFNGVFLK 440
Query: 121 VNKATVNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKVDRQRIALTDNSIIEQVLGKHGI 180
VNKATVNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKVDRQRIALTDNSIIEQVLGKHGI
Sbjct: 441 VNKATVNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKVDRQRIALTDNSIIEQVLGKHGI 620
Query: 181 ICIEDLIHEILTVGPHFREANNFLWPFKLKAPLGGMKKKRNHYVEGGDAGNREDYINELI 240
ICIEDLIHEILTVGPHFREANNFLWPFKLKAPLGGMKKKRNHYVEGGDAGNREDYINELI
Sbjct: 621 ICIEDLIHEILTVGPHFREANNFLWPFKLKAPLGGMKKKRNHYVEGGDAGNREDYINELI 800
Query: 241 RRMN 244
RRMN
Sbjct: 801 RRMN 812
>TC77462 similar to GP|11994560|dbj|BAB02600. 60S ribosomal protein L7
{Arabidopsis thaliana}, partial (98%)
Length = 1012
Score = 431 bits (1107), Expect = e-121
Identities = 208/241 (86%), Positives = 229/241 (94%)
Frame = +3
Query: 4 EEVKTVVPESVLKKQKRNEEWALVKKQEQESAKKKRSETRKLIWSRAKQYAKEYDDSQKE 63
EEVK++VPESVLKKQ R E+WAL K QE E++KKKR+E RKLI+SRAKQY++EY+D ++E
Sbjct: 57 EEVKSIVPESVLKKQNREEQWALAKTQESEASKKKRAENRKLIYSRAKQYSQEYEDKERE 236
Query: 64 LIALKREAKLKGGFYVDPEAKLLFIIRIRGINAMDPKSRKILQLLRLRQICNGVFLKVNK 123
LI+LKREAKLKGGFYVDPEAKLLFIIRIRGINAMDPK+RKILQL RLRQI NGVFLKVNK
Sbjct: 237 LISLKREAKLKGGFYVDPEAKLLFIIRIRGINAMDPKTRKILQLFRLRQIFNGVFLKVNK 416
Query: 124 ATVNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKVDRQRIALTDNSIIEQVLGKHGIICI 183
AT+NMLHRVEPYVTYGYPNLKSVRELIYKRGYGK+DRQR LTDNSIIEQ LGKHGI+CI
Sbjct: 417 ATMNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLDRQRTPLTDNSIIEQGLGKHGILCI 596
Query: 184 EDLIHEILTVGPHFREANNFLWPFKLKAPLGGMKKKRNHYVEGGDAGNREDYINELIRRM 243
EDLIHEILTVGPHF+EANNFLWPFKLKAPLGG+KKKRNHYVEGGDAGNRE+YINELI+RM
Sbjct: 597 EDLIHEILTVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNRENYINELIKRM 776
Query: 244 N 244
N
Sbjct: 777 N 779
>BI264737 similar to PIR|D84422|D84 60S ribosomal protein L7 [imported] -
Arabidopsis thaliana, partial (80%)
Length = 653
Score = 296 bits (759), Expect = 4e-81
Identities = 142/205 (69%), Positives = 172/205 (83%)
Frame = +3
Query: 10 VPESVLKKQKRNEEWALVKKQEQESAKKKRSETRKLIWSRAKQYAKEYDDSQKELIALKR 69
VPESVLKK+KR+E+WA K AK+K TRK I+ RA+QY KEY +++LI LKR
Sbjct: 39 VPESVLKKRKRDEDWAAKKAAAASEAKQKGKTTRKEIFKRAEQYVKEYRTQEQDLIRLKR 218
Query: 70 EAKLKGGFYVDPEAKLLFIIRIRGINAMDPKSRKILQLLRLRQICNGVFLKVNKATVNML 129
+AK KGGFYV+PEAKL+F++RIRGIN + PK+RKILQLLRL +I +GVFLKVNKAT+NML
Sbjct: 219 DAKAKGGFYVEPEAKLVFVVRIRGINDVAPKTRKILQLLRLLRINSGVFLKVNKATMNML 398
Query: 130 HRVEPYVTYGYPNLKSVRELIYKRGYGKVDRQRIALTDNSIIEQVLGKHGIICIEDLIHE 189
RVEPYV YGYPNLK+V+ELIYKRG+GKV++ RI LTDN++IE LG+HGIICIEDL+HE
Sbjct: 399 QRVEPYVAYGYPNLKTVKELIYKRGFGKVNKSRIPLTDNAVIEGALGQHGIICIEDLVHE 578
Query: 190 ILTVGPHFREANNFLWPFKLKAPLG 214
I T GPHF+EANNFLWPFKL +P G
Sbjct: 579 IYTAGPHFKEANNFLWPFKLSSPKG 653
>BG453094 weakly similar to GP|15450713|gb At2g44120/F6E13.25 {Arabidopsis
thaliana}, partial (80%)
Length = 657
Score = 272 bits (695), Expect = 1e-73
Identities = 132/214 (61%), Positives = 159/214 (73%)
Frame = +3
Query: 18 QKRNEEWALVKKQEQESAKKKRSETRKLIWSRAKQYAKEYDDSQKELIALKREAKLKGGF 77
Q R + W L KKK RK I+ RA+QY KEY D + +LI L+REAK G+
Sbjct: 36 QPRRQPW*L-------DTKKKSKSNRKDIFKRAEQYVKEYRDQEADLIRLRREAKASNGY 194
Query: 78 YVDPEAKLLFIIRIRGINAMDPKSRKILQLLRLRQICNGVFLKVNKATVNMLHRVEPYVT 137
Y++PE ++ F++RIRGIN M PKS+KILQLLRLRQI NG FL+VNKATVNML VEPYV
Sbjct: 195 YLEPEGRVAFVVRIRGINDMHPKSKKILQLLRLRQIHNGTFLRVNKATVNMLRLVEPYVA 374
Query: 138 YGYPNLKSVRELIYKRGYGKVDRQRIALTDNSIIEQVLGKHGIICIEDLIHEILTVGPHF 197
+GYPNLK+V+ELIYKRGY KV++ R+ LTDNS+IE+ LGKH IICIEDL+HEI VGP F
Sbjct: 375 WGYPNLKTVKELIYKRGYAKVNKNRLPLTDNSLIEEQLGKHNIICIEDLVHEIYNVGPAF 554
Query: 198 REANNFLWPFKLKAPLGGMKKKRNHYVEGGDAGN 231
+ NFLWPFKL P GG+ KR H +EGG AGN
Sbjct: 555 TKCTNFLWPFKLNTPTGGLPXKRLHXIEGGQAGN 656
>AW981052 similar to GP|15293877|gb ribosomal protein L7 {Ictalurus
punctatus}, partial (62%)
Length = 525
Score = 240 bits (612), Expect = 4e-64
Identities = 112/163 (68%), Positives = 135/163 (82%)
Frame = +2
Query: 82 EAKLLFIIRIRGINAMDPKSRKILQLLRLRQICNGVFLKVNKATVNMLHRVEPYVTYGYP 141
E K+ F+IRIRGIN + PK +KILQLLRLRQI NGVF+K+N+AT+ ML VEPY+TYG P
Sbjct: 2 EPKVAFVIRIRGINQVSPKVKKILQLLRLRQIFNGVFVKLNRATLQMLKLVEPYITYGAP 181
Query: 142 NLKSVRELIYKRGYGKVDRQRIALTDNSIIEQVLGKHGIICIEDLIHEILTVGPHFREAN 201
NLK+VREL+YKRG+ KV+ QR+ +TDN +IE LGKHGI+C+ED+IHE++TVGP F+ N
Sbjct: 182 NLKAVRELVYKRGFAKVNGQRLPITDNRVIEGTLGKHGILCVEDIIHELVTVGPKFKVVN 361
Query: 202 NFLWPFKLKAPLGGMKKKRNHYVEGGDAGNREDYINELIRRMN 244
FLWPFKL +PLGG KK H VEGGDAGNRED INELI RMN
Sbjct: 362 KFLWPFKLNSPLGGFNKKLTHVVEGGDAGNREDGINELISRMN 490
>TC86149 weakly similar to GP|19570054|gb|AAL92346.1 hypothetical protein
{Dictyostelium discoideum}, partial (33%)
Length = 1104
Score = 223 bits (567), Expect = 7e-59
Identities = 111/247 (44%), Positives = 164/247 (65%), Gaps = 3/247 (1%)
Frame = +1
Query: 1 MAKEEVK---TVVPESVLKKQKRNEEWALVKKQEQESAKKKRSETRKLIWSRAKQYAKEY 57
MA+EE +PE +LKK+K +E WAL KK + + + +++ I + + + EY
Sbjct: 52 MAEEEQPKDLNYIPEVILKKRKHSEAWALSKKAQLQKKSFQLRKSKDFI-KKPEDFIFEY 228
Query: 58 DDSQKELIALKREAKLKGGFYVDPEAKLLFIIRIRGINAMDPKSRKILQLLRLRQICNGV 117
+ + +LI +KR K + G P K + +IRI+G M +RK L L LR+I + V
Sbjct: 229 RNREIDLIRMKRRVKWRRGDKSKPSNKPIIVIRIQGKQDMHATTRKHLFSLGLRRIFSAV 408
Query: 118 FLKVNKATVNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKVDRQRIALTDNSIIEQVLGK 177
F+K + L RVEPYVTYGY NLK+++ELIYK+G+ K+D++++ LTDN++IEQ LGK
Sbjct: 409 FVKPTDGVMAKLARVEPYVTYGYANLKTIKELIYKKGHAKIDKRKVPLTDNNLIEQELGK 588
Query: 178 HGIICIEDLIHEILTVGPHFREANNFLWPFKLKAPLGGMKKKRNHYVEGGDAGNREDYIN 237
G++CIED++H+I VGPHF+E F+WPF+L P G+K +N Y +GGD+G+RED IN
Sbjct: 589 FGVVCIEDIVHQIDNVGPHFKEVVRFMWPFELNKPADGLKGLKNRYKDGGDSGDREDLIN 768
Query: 238 ELIRRMN 244
ELI +MN
Sbjct: 769 ELINKMN 789
>TC86250 homologue to GP|11994560|dbj|BAB02600. 60S ribosomal protein L7
{Arabidopsis thaliana}, partial (14%)
Length = 475
Score = 80.5 bits (197), Expect = 5e-16
Identities = 37/37 (100%), Positives = 37/37 (100%)
Frame = +1
Query: 208 KLKAPLGGMKKKRNHYVEGGDAGNREDYINELIRRMN 244
KLKAPLGGMKKKRNHYVEGGDAGNREDYINELIRRMN
Sbjct: 82 KLKAPLGGMKKKRNHYVEGGDAGNREDYINELIRRMN 192
>AL389514 similar to GP|20975622|emb putative ripening related protein {Cicer
arietinum}, partial (54%)
Length = 498
Score = 57.8 bits (138), Expect = 4e-09
Identities = 32/50 (64%), Positives = 35/50 (70%), Gaps = 3/50 (6%)
Frame = +3
Query: 198 REANN--FLWPFKLKAPLGGMK-KKRNHYVEGGDAGNREDYINELIRRMN 244
RE N FL PFKL P GG +K HYVEGGD G+RED INELIR+MN
Sbjct: 300 REERNKIFLCPFKLSNPNGGWHTRKFRHYVEGGDFGDREDRINELIRKMN 449
>TC88462
Length = 1157
Score = 51.6 bits (122), Expect = 3e-07
Identities = 29/46 (63%), Positives = 34/46 (73%), Gaps = 3/46 (6%)
Frame = -1
Query: 16 KKQKRNEEWALVKKQEQESAK---KKRSETRKLIWSRAKQYAKEYD 58
++ KRN E L+KK E ES K KKRSETR+LIWS AK+ AKEYD
Sbjct: 854 EEAKRNGECPLMKKLELESLKRKKKKRSETRELIWS*AKRVAKEYD 717
>TC86112 homologue to GP|13878137|gb|AAK44146.1 unknown protein {Arabidopsis
thaliana}, partial (43%)
Length = 702
Score = 29.3 bits (64), Expect = 1.4
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = -3
Query: 182 CIEDLIHEILTVGPHFREANNFLWPFKLKAPLG 214
C E ++ +ILT ++RE NF+W K++ LG
Sbjct: 103 CSERMM-KILTKRRNYREVGNFIWTLKIREQLG 8
>BQ752428 similar to GP|18376167|emb hypothetical protein {Neurospora
crassa}, partial (3%)
Length = 690
Score = 28.9 bits (63), Expect = 1.9
Identities = 18/57 (31%), Positives = 30/57 (52%)
Frame = +1
Query: 7 KTVVPESVLKKQKRNEEWALVKKQEQESAKKKRSETRKLIWSRAKQYAKEYDDSQKE 63
K VPE K + ++ + ++ES+KKK+ E K + K+ KE D +QK+
Sbjct: 364 KPKVPEDGTKSAEESKPKDAESEPKEESSKKKQEEGEK---TDGKEEGKEGDKNQKK 525
>TC87403 similar to PIR|T02212|T02212 NOI protein - rice, partial (63%)
Length = 701
Score = 28.9 bits (63), Expect = 1.9
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = -3
Query: 5 EVKTVVPESVLKKQKRNEEWALVKKQEQESAKKKRS 40
++ T E +QKRNE+ A+ KK+ + SAK++ S
Sbjct: 141 DMNTSREERFSYEQKRNEKSAINKKESENSAKERES 34
>TC79642 similar to PIR|T07397|T07397 kinesin heavy chain-like protein
(clone PKCBP) - potato, partial (42%)
Length = 2321
Score = 28.5 bits (62), Expect = 2.4
Identities = 23/81 (28%), Positives = 39/81 (47%), Gaps = 8/81 (9%)
Frame = +2
Query: 2 AKEEVKTVVPE--------SVLKKQKRNEEWALVKKQEQESAKKKRSETRKLIWSRAKQY 53
A+E +KT+ E SVL+K+ E +L++K EQE RK + S
Sbjct: 539 AEETIKTLRSEKAILEQKLSVLEKRNSEESSSLLRKLEQE---------RKAVKSEVYDL 691
Query: 54 AKEYDDSQKELIALKREAKLK 74
++ + ++EL+A K +K
Sbjct: 692 ERKIEGYRQELMAAKSIISVK 754
>CA922277 similar to PIR|T49191|T49 hypothetical protein MAA21.130 -
Arabidopsis thaliana, partial (4%)
Length = 704
Score = 28.1 bits (61), Expect = 3.2
Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Frame = -1
Query: 11 PESVLKKQKRNEEWALVKKQEQESAKK-----KRSETRKLIWSRAKQYAKEYDDSQKELI 65
P S+L + +N++ +V++ + S +K + K+ + AK + DD+++E
Sbjct: 614 PASILPRFDQNDKRTMVQELQLSSVQKDFGFDELDSIIKIKHAEAKMFQTRADDARREAE 435
Query: 66 ALKREAKLK 74
LKR A K
Sbjct: 434 GLKRIALAK 408
>TC80439 similar to GP|6063552|dbj|BAA85412.1 ESTs AU065232(E60855)
C23624(S1554) AU078241(E60855) correspond to a region
of the predicted gene.~, partial (71%)
Length = 1172
Score = 27.7 bits (60), Expect = 4.2
Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 1/98 (1%)
Frame = -2
Query: 45 LIWSRAKQYAKEYDDSQKELIALKREAKLKGGFYVDPEAKLL-FIIRIRGINAMDPKSRK 103
L+ AK Y+ +Y ++ E+ FY+ ++LL FII I+ + + P+ R
Sbjct: 907 LVLFPAKLYSMQYTHAKNEI------HNYTVHFYILCCSRLLLFII*IKSMQQLWPRFRD 746
Query: 104 ILQLLRLRQICNGVFLKVNKATVNMLHRVEPYVTYGYP 141
+ L+L + ATV LHR+ ++ Y P
Sbjct: 745 PSRKLKLH*F--------SSATVKSLHRLTQFIVYTKP 656
>TC90982 weakly similar to GP|9758054|dbj|BAB08517.1
gene_id:MYC6.16~pir||T13026~strong similarity to unknown
protein {Arabidopsis thaliana}, partial (4%)
Length = 510
Score = 27.7 bits (60), Expect = 4.2
Identities = 17/62 (27%), Positives = 32/62 (51%)
Frame = +1
Query: 11 PESVLKKQKRNEEWALVKKQEQESAKKKRSETRKLIWSRAKQYAKEYDDSQKELIALKRE 70
P S+L+ + + +L ++ SA E + + ++ Y+ DD ++IAL+RE
Sbjct: 199 PTSILRSLSQPKSISLPRRSLSRSATDNDDELPEELENQIDDYS---DDDDVDVIALERE 369
Query: 71 AK 72
AK
Sbjct: 370 AK 375
>TC79713 weakly similar to GP|21617966|gb|AAM67016.1 unknown {Arabidopsis
thaliana}, partial (84%)
Length = 699
Score = 27.3 bits (59), Expect = 5.5
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +1
Query: 86 LFIIRIRGINAMDPKSRKILQLLRLRQICNGVFLKVNKATV-NMLHRVEPYV 136
L+I +RGI + R+ L+ LRL + CN ++ N TV M+ +V+ V
Sbjct: 274 LYITLVRGIPGTRKQHRRTLEALRLGK-CNRTVMRWNTPTVRGMIQQVKRLV 426
>TC79714 weakly similar to GP|21617966|gb|AAM67016.1 unknown {Arabidopsis
thaliana}, partial (84%)
Length = 647
Score = 27.3 bits (59), Expect = 5.5
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +1
Query: 86 LFIIRIRGINAMDPKSRKILQLLRLRQICNGVFLKVNKATV-NMLHRVEPYV 136
L+I +RGI + R+ L+ LRL + CN ++ N TV M+ +V+ V
Sbjct: 142 LYITLVRGIPGTRKQHRRTLEALRLGK-CNRTVMRWNTPTVRGMIQQVKRLV 294
>TC90813 similar to GP|10177205|dbj|BAB10307. cellulose synthase catalytic
subunit {Arabidopsis thaliana}, partial (21%)
Length = 925
Score = 27.3 bits (59), Expect = 5.5
Identities = 13/38 (34%), Positives = 19/38 (49%)
Frame = +1
Query: 192 TVGPHFREANNFLWPFKLKAPLGGMKKKRNHYVEGGDA 229
T G R ++W L+ P GGM++K GG+A
Sbjct: 301 TDGSEERHCGIWIWKCGLERPNGGMEEKAK*QTSGGEA 414
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.319 0.138 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,512,903
Number of Sequences: 36976
Number of extensions: 80455
Number of successful extensions: 478
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 477
length of query: 244
length of database: 9,014,727
effective HSP length: 94
effective length of query: 150
effective length of database: 5,538,983
effective search space: 830847450
effective search space used: 830847450
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)
Medicago: description of AC148819.1