BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148775.11 - phase: 0 /pseudo/partial
(467 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC78425 similar to GP|11120514|gb|AAG30908.1 cytokinin oxidase {... 284 6e-77
TC82132 similar to PIR|T00807|T00807 probable cytokinin oxidase ... 200 1e-51
CB892160 similar to PIR|T49185|T491 cytokinin oxidase-like prote... 184 8e-47
AW688526 similar to GP|20161335|db putative cytokinin oxidase {O... 144 3e-38
TC80365 similar to PIR|T49185|T49185 cytokinin oxidase-like prot... 142 2e-34
AW736361 weakly similar to GP|11120508|gb| cytokinin oxidase {Ar... 92 6e-19
TC82142 79 3e-15
TC78540 similar to GP|15010680|gb|AAK73999.1 AT5g06580/F15M7_11 ... 51 1e-06
TC88178 weakly similar to GP|10176891|dbj|BAB10121. berberine br... 45 5e-05
TC83820 similar to GP|10041509|emb|CAC07597. unnamed protein pro... 44 1e-04
BE204417 similar to PIR|T06690|T06 galactonolactone dehydrogenas... 35 0.080
TC85992 similar to GP|5031279|gb|AAD38145.1| porin {Prunus armen... 31 0.89
BG648737 weakly similar to GP|21433|emb|CA ORF3 {Solanum tuberos... 29 3.4
TC86471 weakly similar to PIR|F86432|F86432 hypothetical protein... 29 3.4
TC89755 similar to GP|10177798|dbj|BAB11289. emb|CAB87778.1~gene... 28 5.7
TC85663 weakly similar to GP|4335755|gb|AAD17432.1| unknown prot... 28 5.7
TC89600 similar to GP|16323167|gb|AAL15318.1 At1g30760/T5I8_22 {... 28 7.5
TC91649 similar to GP|21700765|gb|AAG38144.1 unknown {Glycine ma... 28 7.5
TC85911 similar to GP|10336513|dbj|BAB13759. cysteine proteinase... 28 9.8
>TC78425 similar to GP|11120514|gb|AAG30908.1 cytokinin oxidase {Arabidopsis
thaliana}, partial (60%)
Length = 1478
Score = 284 bits (726), Expect = 6e-77
Identities = 176/447 (39%), Positives = 247/447 (54%), Gaps = 29/447 (6%)
Frame = +1
Query: 10 SQASTDYGHIIHENPFAVLEPTSISDIANLINYSNSLPHSFTISPRGQAHSVLGQAMTQN 69
S AS D+G + P AVL P + +D+ + + + + T++ RG HS+ GQAM +
Sbjct: 172 SIASKDFGGMKSSTPLAVLRPYTTADVVKAVKAAATTTN-LTVAARGNGHSINGQAMAEK 348
Query: 70 GIVVNMTQLNWYRNGSGIVVSDCDVKNPLGC-YVDVGGEQLWIDVLNATLKH-GLTPLSW 127
G+V++M + G +VDV G LW +VL + + L P SW
Sbjct: 349 GLVLDMR---------ATAAEPFQLLYVDGVPHVDVSGGALWEEVLKRCVSNFQLVPRSW 501
Query: 128 TDYLYLSVGGTLSNAGIGGQTFRFGPQISNVLELDVITGQGNIVTCSQEKNSEVFYAVLG 187
TDYL L+VGGTLSNAG+ GQTFR+GPQ +NV EL+V+TG+G+ C+ +NS++F+A LG
Sbjct: 502 TDYLGLTVGGTLSNAGVSGQTFRYGPQTANVTELEVVTGKGDSFVCNDNQNSDLFFASLG 681
Query: 188 GLGQFGVITRARILLGPAPTRANQEHLISFDRRN------------DSNGADYVEGMLLL 235
GLGQFGVITRARI+L AP +I + + + +G DYVEG ++
Sbjct: 682 GLGQFGVITRARIVLQQAPDMVRWIRVIYSEFEDYTRDAEWLVTLPEGDGFDYVEGFVVA 861
Query: 236 NKPPLILSFYPPSDHPRI----------TSLVTQYG-ITYVLELVKYY-DTNSQANITEE 283
N P + P I L + G + Y LEL +Y T + + +
Sbjct: 862 NNDD------PCNGWPTIPMGSNQIFNPVCLPSSAGPVLYCLELALHYRKTARSSEVNTK 1023
Query: 284 VDNLVKGLKFVPTFMFQKDVTYEEFLDRVHSEELILRSKGLWDVPHPWLNMFIPKSRISD 343
VD L+ GL+FV F+ DV Y +FL RV E ++KG+WD PHPWLNMF+ KS I+D
Sbjct: 1024VDRLLGGLRFVEGIKFEDDVKYMDFLLRVKRVEEDAKAKGIWDAPHPWLNMFVSKSDIAD 1203
Query: 344 FNEGVFKGIILKQNISAGIVLVYPMNRNKWDDRMSAITPDEDVFYTLALLH---AAKEMD 400
F+ VFK ILK + G +LVYP+ R+KWDDR S + PD ++FY +ALL +
Sbjct: 1204FDREVFKK-ILKHGV-GGPILVYPLLRSKWDDRHSVVVPDSNIFYIIALLRFIPPPPKGP 1377
Query: 401 EVKTFQAQNHQILQFCNDAGIKVKEYL 427
AQN+ I+Q C + G K YL
Sbjct: 1378PTDKLVAQNNAIIQLCYNKGFNFKLYL 1458
>TC82132 similar to PIR|T00807|T00807 probable cytokinin oxidase [imported]
- Arabidopsis thaliana, partial (37%)
Length = 995
Score = 200 bits (508), Expect = 1e-51
Identities = 101/229 (44%), Positives = 146/229 (63%), Gaps = 4/229 (1%)
Frame = +2
Query: 243 SFYPPSDHPRITSLVTQYGITYVLELVKYYDTNSQANITEEVDNLVKGLKFVPTFMFQKD 302
S + P D + + + + LEL KY++ + ++V+ + L ++ + +FQ +
Sbjct: 20 SSFNPQDPVQASHFKSDGKTLFCLELAKYFNFQQINIVNQDVERHLSRLNYIRSTLFQTE 199
Query: 303 VTYEEFLDRVHSEELILRSKGLWDVPHPWLNMFIPKSRISDFNEGVFKGIILKQNISAGI 362
VTY EFLDRVH E+ LRSKGLWDVPHPWLN+FIPKS+I F + VF G IL Q S G
Sbjct: 200 VTYVEFLDRVHVSEVKLRSKGLWDVPHPWLNLFIPKSKIHSFAQFVF-GNILTQT-SNGP 373
Query: 363 VLVYPMNRNKWDDRMSAITPDEDVFYTLALLHAA----KEMDEVKTFQAQNHQILQFCND 418
VL+YP+ ++KWD+R S + PDED+FY +A L +A D ++ +QN +IL++C
Sbjct: 374 VLIYPVKKSKWDNRTSVVIPDEDIFYLVAFLTSAVPSSNGTDGLEHILSQNKRILEYCQR 553
Query: 419 AGIKVKEYLSGNKTHQEWVEHFGAKWQQFEERKAKFDPKRILSPGQGIF 467
+ VK+YL + T +EW +HFG KW+ F +RK +DP IL+PGQ IF
Sbjct: 554 ENLGVKQYLPHHNTQEEWRDHFGTKWEIFSQRKFVYDPFAILAPGQRIF 700
>CB892160 similar to PIR|T49185|T491 cytokinin oxidase-like protein -
Arabidopsis thaliana, partial (13%)
Length = 697
Score = 184 bits (466), Expect = 8e-47
Identities = 95/180 (52%), Positives = 132/180 (72%), Gaps = 12/180 (6%)
Frame = +3
Query: 1 KLSRNPQILSQASTDYGHIIHENPFAVLEPTSISDIANLI--NYSNSLPHSFTISPRGQA 58
KL +P+ + AS+DYG+++HE P AV +P++++DI +L+ +Y++S+P F I+ RGQ
Sbjct: 165 KLINDPKAIELASSDYGNLVHEFPAAVFQPSTVNDIVSLVKLSYNSSVP--FLIAARGQG 338
Query: 59 HSVLGQAMTQNGIVVNMTQLNWYRNGS----------GIVVSDCDVKNPLGCYVDVGGEQ 108
HS GQAM ++G+VV+M L +N + GI V + D K G YVDVGGEQ
Sbjct: 339 HSTRGQAMARDGVVVDMKGLRRLKNNNKNNEHNNKNVGIEVFE-DPKVGFGYYVDVGGEQ 515
Query: 109 LWIDVLNATLKHGLTPLSWTDYLYLSVGGTLSNAGIGGQTFRFGPQISNVLELDVITGQG 168
LWIDVL TL++GL P+SWTDYLYL++GGTLSNAGI GQTFR+GPQI++V +LDV+TG+G
Sbjct: 516 LWIDVLYETLEYGLAPVSWTDYLYLTIGGTLSNAGISGQTFRYGPQITSVHQLDVVTGKG 695
>AW688526 similar to GP|20161335|db putative cytokinin oxidase {Oryza sativa
(japonica cultivar-group)}, partial (36%)
Length = 673
Score = 144 bits (362), Expect(2) = 3e-38
Identities = 79/199 (39%), Positives = 118/199 (58%), Gaps = 18/199 (9%)
Frame = +2
Query: 192 FGVITRARILLGPAPTRA---------------NQEHLISFDRRNDSNGADYVEGMLLLN 236
FG+ITRARILL PAPT +QE LI ++ DY+EG ++ N
Sbjct: 2 FGIITRARILLEPAPTMVKWIRVLYSDFTAFTKDQEKLIFAEK-----AFDYIEGFVIKN 166
Query: 237 KPPLILSF---YPPSDHPRITSLVTQYGITYVLELVKYYDTNSQANITEEVDNLVKGLKF 293
+ L+ ++ + P D + + + + LEL KY++ + +++ + L F
Sbjct: 167 RTGLLNNWRLSFNPQDPVQASKFKSDGRTLFCLELAKYFNMEETLEVNQDIQKHLSHLNF 346
Query: 294 VPTFMFQKDVTYEEFLDRVHSEELILRSKGLWDVPHPWLNMFIPKSRISDFNEGVFKGII 353
+P+ +FQ +VTY +FLDRVH E+ LRSKGLWDVPHPWLN+FIPKS+I +F E VF I+
Sbjct: 347 IPSTLFQTEVTYVDFLDRVHISEVKLRSKGLWDVPHPWLNLFIPKSKIHNFAEVVFGNIV 526
Query: 354 LKQNISAGIVLVYPMNRNK 372
+ S G VL+YP++++K
Sbjct: 527 --KETSNGPVLIYPVHKSK 577
Score = 32.7 bits (73), Expect(2) = 3e-38
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +3
Query: 372 KWDDRMSAITPDEDVFYTLAL 392
KWD R S + PDED+FY + +
Sbjct: 576 KWDKRTSVVIPDEDIFYLVGI 638
>TC80365 similar to PIR|T49185|T49185 cytokinin oxidase-like protein -
Arabidopsis thaliana, partial (28%)
Length = 647
Score = 142 bits (359), Expect = 2e-34
Identities = 77/166 (46%), Positives = 106/166 (63%), Gaps = 2/166 (1%)
Frame = +3
Query: 2 LSRNPQILSQASTDYGHIIHENPFAVLEPTSISDIANLINYSNSLPHS--FTISPRGQAH 59
LS + L++AS D+G+ +P AV+ P S+SDIA I + + HS T++ RG H
Sbjct: 174 LSFDETSLNKASKDFGNRYQYHPMAVMYPKSVSDIATTIKHIWHMGHSSHLTVAARGHGH 353
Query: 60 SVLGQAMTQNGIVVNMTQLNWYRNGSGIVVSDCDVKNPLGCYVDVGGEQLWIDVLNATLK 119
S+ GQ+ T GIV+ M L + V N YVDV G +LWI++L+ TLK
Sbjct: 354 SLQGQSQTHGGIVIKMESLK-------VPEMQIHVGNS-SPYVDVSGGELWINILHETLK 509
Query: 120 HGLTPLSWTDYLYLSVGGTLSNAGIGGQTFRFGPQISNVLELDVIT 165
+GL P SWTDYL+L+VGGTLSNAG+ GQ F+ GPQISNV +L+++T
Sbjct: 510 YGLAPRSWTDYLHLTVGGTLSNAGVSGQAFKHGPQISNVQQLEIVT 647
>AW736361 weakly similar to GP|11120508|gb| cytokinin oxidase {Arabidopsis
thaliana}, partial (4%)
Length = 240
Score = 91.7 bits (226), Expect = 6e-19
Identities = 52/87 (59%), Positives = 62/87 (70%), Gaps = 2/87 (2%)
Frame = +3
Query: 34 SDIANLINYSNSLPHSFTISPRGQAHSVLGQAMTQNGIVVNMTQLN--WYRNGSGIVVSD 91
+DI+ LI +SNSLP FTI+ RGQ HSV GQ+MT +GIVVNMT+LN NG+GIVV D
Sbjct: 3 NDISKLIKFSNSLPIPFTIAARGQGHSVNGQSMTNDGIVVNMTELNNELKNNGNGIVVFD 182
Query: 92 CDVKNPLGCYVDVGGEQLWIDVLNATL 118
YVDVGG Q WIDVL+A+L
Sbjct: 183 --------KYVDVGGGQRWIDVLHASL 239
>TC82142
Length = 355
Score = 79.3 bits (194), Expect = 3e-15
Identities = 38/61 (62%), Positives = 50/61 (81%)
Frame = +2
Query: 2 LSRNPQILSQASTDYGHIIHENPFAVLEPTSISDIANLINYSNSLPHSFTISPRGQAHSV 61
LSR+P +S ASTD+GHIIH+NPFA+ P+SI+DI+ LI +SNSLP FTI+ RG+ HSV
Sbjct: 170 LSRDPVTISLASTDFGHIIHQNPFAIFAPSSINDISKLIKFSNSLPIPFTIAARGR-HSV 346
Query: 62 L 62
+
Sbjct: 347 M 349
>TC78540 similar to GP|15010680|gb|AAK73999.1 AT5g06580/F15M7_11
{Arabidopsis thaliana}, partial (77%)
Length = 2163
Score = 50.8 bits (120), Expect = 1e-06
Identities = 52/190 (27%), Positives = 84/190 (43%), Gaps = 7/190 (3%)
Frame = +1
Query: 24 PFAVLEPTSISDIANLINYSNSLPHSFTISPRGQAHSVLGQAMTQNG-IVVNMTQLNWYR 82
P ++ P S +++ ++ N+ H I P G A S+ G ++ NG + ++M+ + +
Sbjct: 484 PDVIVYPRSEEEVSKIVKSCNN--HKIPIVPYGGATSIEGHTLSPNGGVCIDMSSM---K 648
Query: 83 NGSGIVVSDCDVKNPLGCYVDVGGEQLWIDVLNATLKHGLT-PLSWTDYLYLSVGGTLSN 141
+ V D DV VD G W+++ +GL PL S+GG +
Sbjct: 649 RVKALHVDDMDV------VVDPGIG--WMELNEYLEPYGLFFPLDPGPGA--SIGGMCAT 798
Query: 142 AGIGGQTFRFGPQISNVLELDVITGQGNIV-TCSQEKNSEVFY----AVLGGLGQFGVIT 196
G R+G NV+ L V+ G+IV T S+ + S Y V+G G GVIT
Sbjct: 799 RCSGSLAVRYGTMRDNVISLKVVFANGDIVKTASRARKSAAGYDLTRLVIGSEGTLGVIT 978
Query: 197 RARILLGPAP 206
+ L P
Sbjct: 979 EVTLRLQKIP 1008
>TC88178 weakly similar to GP|10176891|dbj|BAB10121. berberine bridge enzyme
{Arabidopsis thaliana}, partial (56%)
Length = 1629
Score = 45.4 bits (106), Expect = 5e-05
Identities = 39/160 (24%), Positives = 67/160 (41%), Gaps = 13/160 (8%)
Frame = +1
Query: 93 DVKNPLGCYVDVGGEQLWID-----------VLNATLKHGLTPLSWTDYLYLSVGGTLSN 141
D++N +D+ E W+ + N + HG S + VGG S
Sbjct: 409 DLRNLRSITIDIKEENAWVQAGATLGELYYAIANKSNLHGFPAGSCPT---VGVGGHFSG 579
Query: 142 AGIGGQTFRFGPQISNVLELDVITGQGNIVTCSQEKNSEVFYAVLGGLG-QFGVITRARI 200
G G ++G N+++ +I GNI+ + ++F+A+ GG G FGVIT ++
Sbjct: 580 GGFGTIFRKYGLATDNIIDAQIIDVNGNILN-REMMGEDLFWAIRGGGGSSFGVITAWKV 756
Query: 201 LLGPAPTRANQEHLISFDRRNDSNGAD-YVEGMLLLNKPP 239
L P + R D N +++ ++ NK P
Sbjct: 757 KLVRVPLIVT---IFDIPNRLDQNATTLFMKWQIIANKLP 867
>TC83820 similar to GP|10041509|emb|CAC07597. unnamed protein product
{Helianthus annuus}, partial (37%)
Length = 868
Score = 44.3 bits (103), Expect = 1e-04
Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Frame = +3
Query: 133 LSVGGTLSNAGIGGQTFRFGPQISNVLELDVITGQGNIVTCSQEKNSEVFYAVLGGLG-Q 191
+ VGG +S AG G ++G NVL+ ++I +G ++ + ++F+A+ GG G
Sbjct: 549 VGVGGHVSGAGYGNLMRKYGTSTDNVLDAEIIDSKGRLLD-RKSMGEDLFWAIRGGGGAN 725
Query: 192 FGVITRARILLGPAP 206
FGV+ +I L P
Sbjct: 726 FGVVLSYKIKLXKVP 770
>BE204417 similar to PIR|T06690|T06 galactonolactone dehydrogenase (EC
1.3.2.3) - Arabidopsis thaliana, partial (34%)
Length = 632
Score = 34.7 bits (78), Expect = 0.080
Identities = 18/64 (28%), Positives = 29/64 (45%)
Frame = +1
Query: 137 GTLSNAGIGGQTFRFGPQISNVLELDVITGQGNIVTCSQEKNSEVFYAVLGGLGQFGVIT 196
G + G G R P V+ + ++T + S+EK+ E+FY GLG GV+
Sbjct: 13 GGIIQVGAHGTGARLPPIDEQVIAMKLVTPAKGTIEVSKEKDPELFYLARCGLGGLGVVA 192
Query: 197 RARI 200
+
Sbjct: 193 EVTL 204
>TC85992 similar to GP|5031279|gb|AAD38145.1| porin {Prunus armeniaca},
partial (88%)
Length = 1293
Score = 31.2 bits (69), Expect = 0.89
Identities = 34/148 (22%), Positives = 60/148 (39%), Gaps = 11/148 (7%)
Frame = +1
Query: 273 DTNSQANITEEVDNLVKGLKFVPTFMFQKDVTYEEFLDRVHSEELILRSKGLWDVPHPWL 332
DTNS T VD V GLK + +F++ + + + L +H I S GL P +
Sbjct: 280 DTNSNLRTTITVDETVPGLKTIFSFIYPEQKSGKVELQYLHDYAGISTSIGLTATPTVNI 459
Query: 333 NMFIPKSRI---SDFNEGVFKGIILKQNISAGIV---LVYPMNRNKWDDRMSA-----IT 381
+ + + + SD + G + K N + L+ + N D ++A ++
Sbjct: 460 SAVLGNNLVSVGSDVSFETSSGSLNKCNFGLNVTHADLIASLTVNDRGDSLNASYYHVVS 639
Query: 382 PDEDVFYTLALLHAAKEMDEVKTFQAQN 409
P + L H+ + V T Q+
Sbjct: 640 PLTNTAVGAELSHSFSSNENVLTIGTQH 723
>BG648737 weakly similar to GP|21433|emb|CA ORF3 {Solanum tuberosum}, partial
(10%)
Length = 804
Score = 29.3 bits (64), Expect = 3.4
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +1
Query: 325 WDVPHPWLNMFIPKSRISDFNEGVFKGIILKQNISAGIV 363
W +P +N+FIPK VFKG +L++N + GI+
Sbjct: 46 WTLPSLKINLFIPKL--------VFKGRVLQKNTNFGIL 138
>TC86471 weakly similar to PIR|F86432|F86432 hypothetical protein AAD25758.1
[imported] - Arabidopsis thaliana, partial (49%)
Length = 1461
Score = 29.3 bits (64), Expect = 3.4
Identities = 11/38 (28%), Positives = 19/38 (49%)
Frame = +2
Query: 133 LSVGGTLSNAGIGGQTFRFGPQISNVLELDVITGQGNI 170
+ VGG S G G +FG + N+L+ ++ G +
Sbjct: 617 VGVGGHFSGGGYGNMMRKFGLSVDNILDAKIVDVDGRV 730
>TC89755 similar to GP|10177798|dbj|BAB11289.
emb|CAB87778.1~gene_id:MXA21.9~strong similarity to
unknown protein {Arabidopsis thaliana}, partial (59%)
Length = 864
Score = 28.5 bits (62), Expect = 5.7
Identities = 20/64 (31%), Positives = 32/64 (49%)
Frame = +3
Query: 312 VHSEELILRSKGLWDVPHPWLNMFIPKSRISDFNEGVFKGIILKQNISAGIVLVYPMNRN 371
V E+LIL + + P L SRIS+ +G++L I +G+ ++YP+ R
Sbjct: 642 VKDEQLILYGQSVGSGPTLDL-----ASRISEL-----RGVVLHSPILSGLRVLYPVKRT 791
Query: 372 KWDD 375
W D
Sbjct: 792 YWFD 803
>TC85663 weakly similar to GP|4335755|gb|AAD17432.1| unknown protein
{Arabidopsis thaliana}, partial (31%)
Length = 937
Score = 28.5 bits (62), Expect = 5.7
Identities = 18/81 (22%), Positives = 37/81 (45%)
Frame = -1
Query: 237 KPPLILSFYPPSDHPRITSLVTQYGITYVLELVKYYDTNSQANITEEVDNLVKGLKFVPT 296
+ PL+++ +D + L T+ G K+++ + N +E GLKF P
Sbjct: 820 RKPLVININMITDTRSLERLFTKLG-------TKFHEAKREQNTRKET-----GLKFTPI 677
Query: 297 FMFQKDVTYEEFLDRVHSEEL 317
F+ + ++++HS +L
Sbjct: 676 FLIYMCNRIRKNINKLHSHDL 614
>TC89600 similar to GP|16323167|gb|AAL15318.1 At1g30760/T5I8_22 {Arabidopsis
thaliana}, partial (29%)
Length = 700
Score = 28.1 bits (61), Expect = 7.5
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +2
Query: 133 LSVGGTLSNAGIGGQTFRFGPQISNVLELDVITGQGNIV 171
L VGG ++ G ++G + NVL ++ +GNI+
Sbjct: 548 LGVGGHITGGAYGTLMRKYGLGVDNVLNARIVDAKGNIL 664
>TC91649 similar to GP|21700765|gb|AAG38144.1 unknown {Glycine max}, partial
(93%)
Length = 1143
Score = 28.1 bits (61), Expect = 7.5
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +3
Query: 235 LNKPPLILSFYPPSDHPRITSL 256
+NKPPL++ SDHP ++SL
Sbjct: 360 VNKPPLMIENVGHSDHPAVSSL 425
>TC85911 similar to GP|10336513|dbj|BAB13759. cysteine proteinase
{Astragalus sinicus}, partial (96%)
Length = 1315
Score = 27.7 bits (60), Expect = 9.8
Identities = 8/27 (29%), Positives = 18/27 (66%)
Frame = +3
Query: 428 SGNKTHQEWVEHFGAKWQQFEERKAKF 454
S ++ H+ W+ H+G ++ +ER+ +F
Sbjct: 189 SMHERHERWMNHYGKVYKDHQEREKRF 269
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.319 0.138 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,774,940
Number of Sequences: 36976
Number of extensions: 211748
Number of successful extensions: 995
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 977
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 982
length of query: 467
length of database: 9,014,727
effective HSP length: 100
effective length of query: 367
effective length of database: 5,317,127
effective search space: 1951385609
effective search space used: 1951385609
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)
Medicago: description of AC148775.11