BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148763.8 - phase: 1 /pseudo
(180 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC87678 weakly similar to GP|10140763|gb|AAG13594.1 mucin-like p... 204 1e-53
TC77781 weakly similar to GP|23237921|dbj|BAC16494. contains EST... 112 6e-26
TC77780 weakly similar to GP|23237921|dbj|BAC16494. contains EST... 107 3e-24
BI268260 similar to GP|16930481|gb At1g08470/T27G7_9 {Arabidopsi... 86 1e-17
CA917519 similar to GP|3342552|gb|A putative strictosidine synth... 59 8e-10
BI310843 weakly similar to GP|13928598|dbj strictosidine synthas... 48 2e-06
CA919923 weakly similar to GP|23237921|dbj contains ESTs D41667(... 32 0.005
TC92619 similar to PIR|T47763|T47763 hypothetical protein F24I3.... 35 0.021
BF005790 similar to PIR|T47763|T477 hypothetical protein F24I3.1... 33 0.047
TC77290 weakly similar to GP|16604454|gb|AAL24233.1 AT4g21150/F7... 31 0.23
TC83450 similar to GP|10177035|dbj|BAB10183. prolyl tRNA synthet... 27 4.4
TC81852 27 5.7
>TC87678 weakly similar to GP|10140763|gb|AAG13594.1 mucin-like protein
{Oryza sativa}, partial (50%)
Length = 1293
Score = 204 bits (520), Expect = 1e-53
Identities = 98/151 (64%), Positives = 122/151 (79%)
Frame = +3
Query: 30 GCEDGWIKRITVADSVVENWVHSSGRPLGLALEKTGELIVADAHLGLLRVTQKEGKEPKV 89
GCEDGWIKRI+V SVVE+W+++ GRPLGLA + G+LI+ADA GLLRVT +E ++
Sbjct: 300 GCEDGWIKRISVNGSVVEDWINTGGRPLGLAFDGNGQLIIADADKGLLRVT----REKEI 467
Query: 90 EILANEHDGLKFKLTDGVDVGEDGTIYFTEATYKYNLYDFYNDILEGEPHGRFMSYNPAT 149
E+L E DGLKFKLTDGVDV DGTIYFT+A+ KY++ D DILEG+P+GRF+SYNPAT
Sbjct: 468 EVLVTEIDGLKFKLTDGVDVAHDGTIYFTDASSKYSIKDSVLDILEGKPNGRFLSYNPAT 647
Query: 150 KKVTLLARNLYFANRVAIAPDQKFVVYCETA 180
KK TLL +LYF N VA++PDQ FVV+CET+
Sbjct: 648 KKTTLLVSDLYFPNGVAVSPDQNFVVFCETS 740
>TC77781 weakly similar to GP|23237921|dbj|BAC16494. contains ESTs
D41667(S4320) AU033165(S4320)~mucin-like protein,
partial (22%)
Length = 1150
Score = 112 bits (281), Expect = 6e-26
Identities = 61/148 (41%), Positives = 86/148 (57%), Gaps = 1/148 (0%)
Frame = +3
Query: 33 DGWIKRITVADSVVENWVH-SSGRPLGLALEKTGELIVADAHLGLLRVTQKEGKEPKVEI 91
DGWIKR+ V + ENW H S LG+ K G LIV DA GLL+VT E +
Sbjct: 369 DGWIKRM-VRNENWENWKHIDSSSLLGITTSKDGGLIVCDASEGLLKVT-----EDGFSV 530
Query: 92 LANEHDGLKFKLTDGVDVGEDGTIYFTEATYKYNLYDFYNDILEGEPHGRFMSYNPATKK 151
+ ++ +G + D V DG IYF+ + K+ L+D+Y D+LE PHG+ + YNP +
Sbjct: 531 ILSQVNGSQLMFADDVIEASDGNIYFSVGSNKFGLHDWYLDLLEARPHGQLLKYNPTLNE 710
Query: 152 VTLLARNLYFANRVAIAPDQKFVVYCET 179
++ NL FAN VA++ D+ +VV CET
Sbjct: 711 TVIVIDNLTFANGVALSKDEDYVVVCET 794
>TC77780 weakly similar to GP|23237921|dbj|BAC16494. contains ESTs
D41667(S4320) AU033165(S4320)~mucin-like protein,
partial (13%)
Length = 1215
Score = 107 bits (267), Expect = 3e-24
Identities = 57/148 (38%), Positives = 87/148 (58%), Gaps = 1/148 (0%)
Frame = +1
Query: 33 DGWIKRITVADSVVENWVH-SSGRPLGLALEKTGELIVADAHLGLLRVTQKEGKEPKVEI 91
DGWIKR+ V + ENW H S LG+ K G LIV D LGLL+VT E +
Sbjct: 247 DGWIKRM-VRNENWENWKHIDSSSLLGITTSKDGGLIVCDTTLGLLKVT-----EDGFSV 408
Query: 92 LANEHDGLKFKLTDGVDVGEDGTIYFTEATYKYNLYDFYNDILEGEPHGRFMSYNPATKK 151
+ ++ +G + D + DG IYF+ + K+ L+++Y D+LE PHG+ + YNP + +
Sbjct: 409 ILSQVNGSQLIFADDIIEASDGNIYFSVPSTKFGLHNWYLDVLEARPHGQLLRYNPLSNE 588
Query: 152 VTLLARNLYFANRVAIAPDQKFVVYCET 179
++ +L FAN VA++ D+ ++V CET
Sbjct: 589 TVIVLDHLAFANGVALSKDEDYLVVCET 672
>BI268260 similar to GP|16930481|gb At1g08470/T27G7_9 {Arabidopsis thaliana},
partial (34%)
Length = 521
Score = 85.5 bits (210), Expect = 1e-17
Identities = 45/104 (43%), Positives = 64/104 (61%), Gaps = 1/104 (0%)
Frame = +3
Query: 51 HSSGRPLGLALEK-TGELIVADAHLGLLRVTQKEGKEPKVEILANEHDGLKFKLTDGVDV 109
H GRPLGL +K TGEL +ADA+LGLL+V + G LA E +G+ + T+ VDV
Sbjct: 162 HICGRPLGLRFDKKTGELYIADAYLGLLKVGPEGGLATS---LATEAEGVPLRFTNDVDV 332
Query: 110 GEDGTIYFTEATYKYNLYDFYNDILEGEPHGRFMSYNPATKKVT 153
+G +YFTE++ Y +F + G+ G+ + YNPATK+ T
Sbjct: 333 DSEGNVYFTESSSIYQRRNFMQLVFSGDDSGKVLKYNPATKETT 464
>CA917519 similar to GP|3342552|gb|A putative strictosidine synthase
{Arabidopsis thaliana}, partial (23%)
Length = 757
Score = 59.3 bits (142), Expect = 8e-10
Identities = 27/91 (29%), Positives = 55/91 (59%), Gaps = 1/91 (1%)
Frame = -3
Query: 90 EILANEHDGLKFKLTDGVDVGE-DGTIYFTEATYKYNLYDFYNDILEGEPHGRFMSYNPA 148
+++++ +G T+ +D+ + G +YFT ++ KY ++ + IL G+ GR + Y P
Sbjct: 737 KVISHAVEGQPLAFTNSLDIDQRTGAVYFTSSSSKYERRNYVSLILTGDSSGRLIKYEPK 558
Query: 149 TKKVTLLARNLYFANRVAIAPDQKFVVYCET 179
+++V +L NL FAN VA++ + +++ ET
Sbjct: 557 SEQVNVLLNNLTFANGVALSKNGNYILISET 465
>BI310843 weakly similar to GP|13928598|dbj strictosidine synthase
{Ophiorrhiza pumila}, partial (16%)
Length = 621
Score = 48.1 bits (113), Expect = 2e-06
Identities = 22/66 (33%), Positives = 37/66 (55%)
Frame = +2
Query: 113 GTIYFTEATYKYNLYDFYNDILEGEPHGRFMSYNPATKKVTLLARNLYFANRVAIAPDQK 172
G +YFT A+ + L D+ + G+ G + Y+P+T + T+L NL + VA++ D
Sbjct: 17 GIVYFTVASTNFQLKDYQTLVTSGDSSGSLLRYDPSTNQTTVLLSNLSMPSGVAVSKDGS 196
Query: 173 FVVYCE 178
FV+ E
Sbjct: 197 FVLVGE 214
>CA919923 weakly similar to GP|23237921|dbj contains ESTs D41667(S4320)
AU033165(S4320)~mucin-like protein, partial (20%)
Length = 774
Score = 32.3 bits (72), Expect(2) = 0.005
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = -2
Query: 137 EPHGRFMSYNPATKKVTLLARNLYFANRVAIAPDQKFVVYCET 179
+ H +P + ++ +L FAN VA++ D+ ++V CET
Sbjct: 743 QDHMTLFKVHPCPNETVIVLDHLAFANGVALSKDEDYLVVCET 615
Score = 23.5 bits (49), Expect(2) = 0.005
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = -1
Query: 126 LYDFYNDILEGEPHGRF 142
L+++Y D+LE PH F
Sbjct: 774 LHNWYLDVLEARPHDTF 724
>TC92619 similar to PIR|T47763|T47763 hypothetical protein F24I3.110 -
Arabidopsis thaliana, partial (43%)
Length = 682
Score = 34.7 bits (78), Expect = 0.021
Identities = 24/56 (42%), Positives = 30/56 (52%), Gaps = 9/56 (16%)
Frame = +3
Query: 30 GCEDGWIKRITVADSVVENWVHS--------SGRPLGLALEK-TGELIVADAHLGL 76
G E GW + V S N VH GRPLGL +K +G+L +ADA+LGL
Sbjct: 282 GEERGWTQ-FAVTSSNRSNCVHPFAPELEHVCGRPLGLKFDKKSGDLYIADAYLGL 446
>BF005790 similar to PIR|T47763|T477 hypothetical protein F24I3.110 -
Arabidopsis thaliana, partial (25%)
Length = 425
Score = 33.5 bits (75), Expect = 0.047
Identities = 16/27 (59%), Positives = 20/27 (73%), Gaps = 1/27 (3%)
Frame = +2
Query: 51 HSSGRPLGLALEK-TGELIVADAHLGL 76
H GRPLGL +K G+L +ADA+LGL
Sbjct: 302 HICGRPLGLRFDKKNGDLYIADAYLGL 382
>TC77290 weakly similar to GP|16604454|gb|AAL24233.1 AT4g21150/F7J7_90
{Arabidopsis thaliana}, partial (79%)
Length = 2457
Score = 31.2 bits (69), Expect = 0.23
Identities = 29/94 (30%), Positives = 43/94 (44%), Gaps = 6/94 (6%)
Frame = +2
Query: 36 IKRITVADSVVENWVHSSGRP------LGLALEKTGELIVADAHLGLLRVTQKEGKEPKV 89
IK ++ +D W +SS P GLALE A G++ + E + KV
Sbjct: 572 IKALSQSDG---KWRYSSNNPESSIHAAGLALE---------ALAGVVSLASSEIDQSKV 715
Query: 90 EILANEHDGLKFKLTDGVDVGEDGTIYFTEATYK 123
I+ N G+ KL D ++ +DG YF E T +
Sbjct: 716 SIVNN---GI-VKLFDSIEKYDDGAFYFDEKTVR 805
>TC83450 similar to GP|10177035|dbj|BAB10183. prolyl tRNA synthetase
{Arabidopsis thaliana}, partial (33%)
Length = 781
Score = 26.9 bits (58), Expect = 4.4
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -1
Query: 121 TYKYNLYDFYNDILEGEPHGRFMSYNPATKKVTLLARNLYF 161
+Y+ N+ FYN L G + ATKKV + A Y+
Sbjct: 706 SYRINISPFYNFCLSGNKKLISQNSTNATKKVQIPAHKSYY 584
>TC81852
Length = 527
Score = 26.6 bits (57), Expect = 5.7
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -1
Query: 120 ATYKYNLYDFYNDILEGEPHGRFM 143
+TY YN+ +ND L+ EP G FM
Sbjct: 131 STYSYNVIPIWND-LKSEPFGFFM 63
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.330 0.148 0.475
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,212,168
Number of Sequences: 36976
Number of extensions: 63227
Number of successful extensions: 325
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 318
length of query: 180
length of database: 9,014,727
effective HSP length: 90
effective length of query: 90
effective length of database: 5,686,887
effective search space: 511819830
effective search space used: 511819830
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (25.8 bits)
Medicago: description of AC148763.8