BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148762.6 + phase: 0
(93 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC82287 similar to GP|9294226|dbj|BAB02128.1 DNA-binding protein... 145 3e-36
BI268948 similar to PIR|T49951|T4995 hypothetical protein F8M21.... 122 2e-29
TC83553 similar to GP|9294226|dbj|BAB02128.1 DNA-binding protein... 98 5e-22
BQ135636 similar to PIR|A96774|A9677 probable DNA-binding protei... 82 5e-17
TC77805 similar to GP|20127064|gb|AAM10951.1 putative bHLH trans... 33 0.014
TC93549 similar to GP|20127044|gb|AAM10942.1 putative bHLH trans... 33 0.014
TC80735 similar to GP|20127064|gb|AAM10951.1 putative bHLH trans... 30 0.12
TC90528 homologue to GP|21592490|gb|AAM64440.1 unknown {Arabidop... 30 0.16
TC78879 similar to GP|11045087|emb|CAC14433. putative protein {B... 30 0.21
TC81279 similar to PIR|T47949|T47949 hypothetical protein F2A19.... 27 1.7
TC83396 similar to GP|22858664|gb|AAN05792.1 unknown {Gossypium ... 26 3.0
TC79387 similar to GP|11994413|dbj|BAB02415. DNA-3-methyladenine... 25 5.1
TC85935 homologue to PIR|S20941|S20941 protochlorophyllide reduc... 25 6.6
TC92483 similar to GP|21592537|gb|AAM64486.1 unknown {Arabidopsi... 25 6.6
TC81493 weakly similar to PIR|F86249|F86249 protein F25C20.23 [i... 25 6.6
TC91541 weakly similar to GP|15810253|gb|AAL07014.1 unknown prot... 24 8.6
>TC82287 similar to GP|9294226|dbj|BAB02128.1 DNA-binding protein-like
{Arabidopsis thaliana}, partial (96%)
Length = 795
Score = 145 bits (366), Expect = 3e-36
Identities = 79/93 (84%), Positives = 85/93 (90%)
Frame = +1
Query: 1 MSSRRSRQQSGGSTRISDDQIIDLVCKLRQLVPEIRNRRSDKVPASKVLQETCNYIRNLQ 60
MSSRRSRQQS S+RISDDQII+LV KLRQLVPEIR+RRSDKV ASKVLQETCNYIRNL
Sbjct: 385 MSSRRSRQQSS-SSRISDDQIIELVSKLRQLVPEIRHRRSDKVSASKVLQETCNYIRNLH 561
Query: 61 REVDDLSLRLSQLLATIDSDSAEASIIRSLLNQ 93
REVDDLS RLSQLL TID+DS EA+IIRSL+NQ
Sbjct: 562 REVDDLSERLSQLLVTIDADSPEANIIRSLINQ 660
>BI268948 similar to PIR|T49951|T4995 hypothetical protein F8M21.50 -
Arabidopsis thaliana, partial (86%)
Length = 723
Score = 122 bits (306), Expect = 2e-29
Identities = 65/92 (70%), Positives = 80/92 (86%), Gaps = 1/92 (1%)
Frame = +2
Query: 1 MSSRRSR-QQSGGSTRISDDQIIDLVCKLRQLVPEIRNRRSDKVPASKVLQETCNYIRNL 59
MSSRRSR +QSGGS+ I+D QI DL+ KL+QL+PE+ RS+KV A+KVLQETCNYI+NL
Sbjct: 290 MSSRRSRSRQSGGSSEITDAQITDLISKLQQLIPELHASRSNKVSATKVLQETCNYIKNL 469
Query: 60 QREVDDLSLRLSQLLATIDSDSAEASIIRSLL 91
REVDDLS RLSQLLA+ DS+SA+A+II+SLL
Sbjct: 470 HREVDDLSDRLSQLLASTDSNSAQAAIIKSLL 565
>TC83553 similar to GP|9294226|dbj|BAB02128.1 DNA-binding protein-like
{Arabidopsis thaliana}, partial (65%)
Length = 648
Score = 98.2 bits (243), Expect = 5e-22
Identities = 52/68 (76%), Positives = 58/68 (84%), Gaps = 1/68 (1%)
Frame = +2
Query: 1 MSSRRSR-QQSGGSTRISDDQIIDLVCKLRQLVPEIRNRRSDKVPASKVLQETCNYIRNL 59
MSSRRSR +Q+ S I+DDQI DLV KL+QL+PEIRNR SDKV AS+VLQETCNYIRNL
Sbjct: 224 MSSRRSRSRQTSSSRNITDDQIHDLVSKLQQLLPEIRNRSSDKVSASRVLQETCNYIRNL 403
Query: 60 QREVDDLS 67
REVDDLS
Sbjct: 404 NREVDDLS 427
>BQ135636 similar to PIR|A96774|A9677 probable DNA-binding protein F1M20.18
[imported] - Arabidopsis thaliana, partial (34%)
Length = 758
Score = 81.6 bits (200), Expect = 5e-17
Identities = 45/83 (54%), Positives = 56/83 (67%)
Frame = +2
Query: 5 RSRQQSGGSTRISDDQIIDLVCKLRQLVPEIRNRRSDKVPASKVLQETCNYIRNLQREVD 64
R+ QQ + DDQII LV +L QLV EI + R+DK A KVLQ+TCNYI+N RE+D
Sbjct: 200 RTGQQCFCLQKFHDDQIIQLVSELPQLVTEILHMRTDKASACKVLQQTCNYIKNSHRELD 379
Query: 65 DLSLRLSQLLATIDSDSAEASII 87
DLS L+Q L T+D+D A II
Sbjct: 380 DLSETLAQQLVTLDADITYAIII 448
>TC77805 similar to GP|20127064|gb|AAM10951.1 putative bHLH transcription
factor {Arabidopsis thaliana}, partial (30%)
Length = 2068
Score = 33.5 bits (75), Expect = 0.014
Identities = 21/64 (32%), Positives = 40/64 (61%)
Frame = +3
Query: 15 RISDDQIIDLVCKLRQLVPEIRNRRSDKVPASKVLQETCNYIRNLQREVDDLSLRLSQLL 74
R+ ++I + + L+ LVP N+ + K + +L E NY+++LQR+V+ LS++LS +
Sbjct: 1194 RVRREKISERMKLLQDLVPGC-NKVTGK---ALMLDEIINYVQSLQRQVEFLSMKLSSVN 1361
Query: 75 ATID 78
+D
Sbjct: 1362 TKMD 1373
>TC93549 similar to GP|20127044|gb|AAM10942.1 putative bHLH transcription
factor {Arabidopsis thaliana}, partial (22%)
Length = 715
Score = 33.5 bits (75), Expect = 0.014
Identities = 22/79 (27%), Positives = 46/79 (57%)
Frame = +1
Query: 15 RISDDQIIDLVCKLRQLVPEIRNRRSDKVPASKVLQETCNYIRNLQREVDDLSLRLSQLL 74
R+ ++I + + L++LVP V +L E NY+++LQR+V+ LS++L+ +
Sbjct: 307 RVRREKISERMKFLQELVPGCSKVTGKAV----MLDEIINYVQSLQRQVEFLSMKLATVN 474
Query: 75 ATIDSDSAEASIIRSLLNQ 93
+D + E+ + + +L+Q
Sbjct: 475 PRLDF-NIESLLAKDVLHQ 528
>TC80735 similar to GP|20127064|gb|AAM10951.1 putative bHLH transcription
factor {Arabidopsis thaliana}, partial (18%)
Length = 917
Score = 30.4 bits (67), Expect = 0.12
Identities = 12/31 (38%), Positives = 23/31 (73%)
Frame = +3
Query: 48 VLQETCNYIRNLQREVDDLSLRLSQLLATID 78
+L E NY+++LQR+V+ LS++L+ + +D
Sbjct: 54 MLDEIINYVQSLQRQVEFLSMKLATVNTRVD 146
>TC90528 homologue to GP|21592490|gb|AAM64440.1 unknown {Arabidopsis
thaliana}, partial (37%)
Length = 950
Score = 30.0 bits (66), Expect = 0.16
Identities = 13/32 (40%), Positives = 24/32 (74%)
Frame = +1
Query: 48 VLQETCNYIRNLQREVDDLSLRLSQLLATIDS 79
VL E NYI++LQR+V+ LS++L + + +++
Sbjct: 772 VLDEIINYIQSLQRQVEFLSMKLEAVNSRLNT 867
>TC78879 similar to GP|11045087|emb|CAC14433. putative protein {Brassica
napus}, partial (34%)
Length = 1537
Score = 29.6 bits (65), Expect = 0.21
Identities = 20/65 (30%), Positives = 35/65 (53%)
Frame = +1
Query: 4 RRSRQQSGGSTRISDDQIIDLVCKLRQLVPEIRNRRSDKVPASKVLQETCNYIRNLQREV 63
+++R QS + ++ +++ D + L QLV K + VL E+ YIR LQ ++
Sbjct: 679 KKARVQSS-TFKVRKEKLGDRITALHQLVSPF-----GKTDTASVLLESIGYIRFLQSQI 840
Query: 64 DDLSL 68
+ LSL
Sbjct: 841 EALSL 855
>TC81279 similar to PIR|T47949|T47949 hypothetical protein F2A19.170 -
Arabidopsis thaliana, partial (31%)
Length = 1205
Score = 26.6 bits (57), Expect = 1.7
Identities = 26/113 (23%), Positives = 53/113 (46%), Gaps = 33/113 (29%)
Frame = +2
Query: 14 TRISDDQIIDLVCKLRQLVPEIRNRRSDKVPA-SKVLQE---TCNYIR----NLQRE--- 62
T+ D+ + + +L+Q + E N S+K+ +KV++E + NY+R +L+R
Sbjct: 434 TQQERDKAVQELTRLKQHLLEKENEESEKMDEDTKVIEELRDSNNYLRAQISHLERALEQ 613
Query: 63 ----------------------VDDLSLRLSQLLATIDSDSAEASIIRSLLNQ 93
+DDL+ +L+ ++TID+ + E +++ L Q
Sbjct: 614 ATSDQEKLKSANNSEILTSREVIDDLNKKLTNCISTIDAKNIELINLQTALGQ 772
>TC83396 similar to GP|22858664|gb|AAN05792.1 unknown {Gossypium hirsutum},
partial (40%)
Length = 921
Score = 25.8 bits (55), Expect = 3.0
Identities = 18/61 (29%), Positives = 29/61 (47%)
Frame = +3
Query: 30 QLVPEIRNRRSDKVPASKVLQETCNYIRNLQREVDDLSLRLSQLLATIDSDSAEASIIRS 89
+LV ++ RR+D V K ++EV+ L ++ TIDS SAE +R
Sbjct: 117 ELVRKLEMRRADYVKTEKA-----------KKEVEKLESQMMVASQTIDSTSAEIVKLRE 263
Query: 90 L 90
+
Sbjct: 264 I 266
>TC79387 similar to GP|11994413|dbj|BAB02415. DNA-3-methyladenine
glycosidase I-like protein {Arabidopsis thaliana},
partial (16%)
Length = 805
Score = 25.0 bits (53), Expect = 5.1
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +3
Query: 42 KVPASKVLQETCNYIRNLQR 61
++ VLQ TCN++ NL+R
Sbjct: 183 RINGRPVLQPTCNHVPNLER 242
>TC85935 homologue to PIR|S20941|S20941 protochlorophyllide reductase (EC
1.3.1.33) precursor - garden pea, complete
Length = 1481
Score = 24.6 bits (52), Expect = 6.6
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +3
Query: 52 TCNYIRNLQREVDDLSLRLSQLLATIDSDSAEASIIRSLLN 92
TC +RNL + DLSL L Q + +D+ A +R+ N
Sbjct: 591 TCQLLRNLHSLLKDLSLVLGQTI--LDTFFFRAFCLRTWAN 707
>TC92483 similar to GP|21592537|gb|AAM64486.1 unknown {Arabidopsis
thaliana}, partial (8%)
Length = 662
Score = 24.6 bits (52), Expect = 6.6
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +2
Query: 42 KVPASKVLQETCNYIRNLQR 61
K+ VLQ TCN + NL+R
Sbjct: 170 KINGRPVLQPTCNRVPNLER 229
>TC81493 weakly similar to PIR|F86249|F86249 protein F25C20.23 [imported]
- Arabidopsis thaliana, partial (9%)
Length = 728
Score = 24.6 bits (52), Expect = 6.6
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = +1
Query: 28 LRQLVPEIRNRRSDKVPASKVLQ--ETCNYIRNLQREVDDLSLRLSQ 72
+ L E+ +VPA +L+ TC + RNL D + L LS+
Sbjct: 7 MADLPTEVTTEILSRVPAKPLLRLRSTCKWWRNLIDSTDFIFLHLSK 147
>TC91541 weakly similar to GP|15810253|gb|AAL07014.1 unknown protein
{Arabidopsis thaliana}, partial (66%)
Length = 820
Score = 24.3 bits (51), Expect = 8.6
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +3
Query: 39 RSDKVPASKVLQETCNYIRNLQREVDDLSLRLSQ 72
R +VP + + T +Y+R+L DDLS L +
Sbjct: 540 REKEVPKFESVNGTLDYLRSLNLSDDDLSKLLKK 641
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.316 0.130 0.339
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,120,826
Number of Sequences: 36976
Number of extensions: 19668
Number of successful extensions: 122
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of query: 93
length of database: 9,014,727
effective HSP length: 69
effective length of query: 24
effective length of database: 6,463,383
effective search space: 155121192
effective search space used: 155121192
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)
Medicago: description of AC148762.6