Medicago
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC148653.2 + phase: 0 
         (117 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC86653 weakly similar to GP|21592732|gb|AAM64681.1 cysteine pro...   127  8e-31
BQ148646 weakly similar to GP|11596186|gb| cystatin-like protein...   114  5e-27
TC86465 similar to SP|Q06445|CYTI_VIGUN Cysteine proteinase inhi...    69  2e-13
TC77929 similar to PIR|T07139|T07139 cysteine proteinase inhibit...    66  2e-12
TC77459 similar to SP|Q06445|CYTI_VIGUN Cysteine proteinase inhi...    61  5e-11
TC89955 similar to GP|22901842|gb|AAN10097.1 NADH dehydrogenase ...    56  2e-09
TC87034 homologue to SP|P13983|EXTN_TOBAC Extensin precursor (Ce...    50  1e-07
BI310700 weakly similar to GP|21592712|gb| cystatin-like protein...    49  2e-07
BI311369 similar to GP|11596186|gb| cystatin-like protein {Citru...    47  1e-06
AJ502739 similar to GP|10119914|gb brain otoferlin {Mus musculus...    30  0.14
TC77500 weakly similar to SP|P21747|EA92_VICFA Embryonic abundan...    29  0.30
TC76471 similar to PIR|T51392|T51392 probable phytochelatin synt...    28  0.39
TC89627 weakly similar to GP|17529290|gb|AAL38872.1 putative pec...    27  0.88
BQ144829                                                               25  3.3
BF642440 similar to GP|4874298|gb| expressed protein {Arabidopsi...    25  4.4
TC85222 homologue to SP|P34922|G3PC_PEA Glyceraldehyde 3-phospha...    25  4.4
TC79565 similar to SP|Q9ZQ70|WRK3_ARATH Probable WRKY transcript...    25  4.4
BE325280 similar to GP|14334426|gb unknown protein {Arabidopsis ...    25  4.4
TC93880 similar to GP|19310478|gb|AAL84973.1 AT3g05350/T12H1_32 ...    25  4.4
BI312045 similar to GP|22324956|gb| putative disease resistant p...    25  5.7

>TC86653 weakly similar to GP|21592732|gb|AAM64681.1 cysteine proteinase
           inhibitor like protein {Arabidopsis thaliana}, partial
           (64%)
          Length = 651

 Score =  127 bits (318), Expect = 8e-31
 Identities = 62/113 (54%), Positives = 82/113 (71%)
 Frame = +2

Query: 3   NPTLLLVLLFVVVLFSYAAARNQFAPGGWSPIDDINDPHVTEIANFAVTEYDRRSGAKLK 62
           N  + ++ L VV +F+ +  ++    GGW+PI ++ DP V EIA FAVTEY ++SG+KL 
Sbjct: 173 NVAIFVLFLSVVSVFTVSDGKDALV-GGWTPIKNVKDPQVVEIAKFAVTEYGKQSGSKLS 349

Query: 63  FEKVINGESQVVAGTNYRLTLSASDGSYSKNYEAVVWEKIWQHFRNLTSFVPV 115
           F KVI GE+QVV+GTNYRL L+A   S +KNYEA+VWEK W H +NLTSF PV
Sbjct: 350 FVKVIKGETQVVSGTNYRLVLAAKVVSATKNYEALVWEKPWLHLKNLTSFKPV 508


>BQ148646 weakly similar to GP|11596186|gb| cystatin-like protein {Citrus x
           paradisi}, partial (34%)
          Length = 645

 Score =  114 bits (285), Expect = 5e-27
 Identities = 66/112 (58%), Positives = 81/112 (71%)
 Frame = +2

Query: 1   MRNPTLLLVLLFVVVLFSYAAARNQFAPGGWSPIDDINDPHVTEIANFAVTEYDRRSGAK 60
           MR  +L+ VLL   VL +Y A R Q    G+SPI +INDPHV EIANFAVTE+D++SGA 
Sbjct: 8   MRFQSLVPVLL---VLLAYVA-RIQAIEDGYSPIGNINDPHVIEIANFAVTEFDKKSGAT 175

Query: 61  LKFEKVINGESQVVAGTNYRLTLSASDGSYSKNYEAVVWEKIWQHFRNLTSF 112
           +KFEK+I GESQ+V GTNYRLT SA   S +K YEA+V+E   +  R LTSF
Sbjct: 176 IKFEKIIKGESQIVHGTNYRLTFSAKIDSLTKVYEAIVYEN--KSTRKLTSF 325


>TC86465 similar to SP|Q06445|CYTI_VIGUN Cysteine proteinase inhibitor
           (Cystatin). [Cowpea] {Vigna unguiculata}, complete
          Length = 660

 Score = 69.3 bits (168), Expect = 2e-13
 Identities = 32/75 (42%), Positives = 47/75 (62%)
 Frame = +1

Query: 38  NDPHVTEIANFAVTEYDRRSGAKLKFEKVINGESQVVAGTNYRLTLSASDGSYSKNYEAV 97
           N   +  +A FAV E++++  A L+F +VI+ + QVVAGT + +TL   DG   K YEA 
Sbjct: 100 NSLAIDGLARFAVEEHNKKQNALLEFSRVISAKEQVVAGTIHHITLEVKDGVNKKVYEAK 279

Query: 98  VWEKIWQHFRNLTSF 112
           VWEK W +F+ +  F
Sbjct: 280 VWEKSWMNFKEVQEF 324


>TC77929 similar to PIR|T07139|T07139 cysteine proteinase inhibitor -
           soybean, partial (80%)
          Length = 965

 Score = 66.2 bits (160), Expect = 2e-12
 Identities = 31/75 (41%), Positives = 44/75 (58%)
 Frame = +2

Query: 38  NDPHVTEIANFAVTEYDRRSGAKLKFEKVINGESQVVAGTNYRLTLSASDGSYSKNYEAV 97
           N   +  +A FAV +++ +  + L+F +V+    QVVAGT + LTL A D    K YEA 
Sbjct: 224 NSLEIESLARFAVDQHNAKQNSLLEFARVVKAREQVVAGTLHHLTLEAIDAGEKKIYEAK 403

Query: 98  VWEKIWQHFRNLTSF 112
           VW K W +F+ LT F
Sbjct: 404 VWVKPWMNFKELTEF 448


>TC77459 similar to SP|Q06445|CYTI_VIGUN Cysteine proteinase inhibitor
           (Cystatin). [Cowpea] {Vigna unguiculata}, partial (92%)
          Length = 618

 Score = 61.2 bits (147), Expect = 5e-11
 Identities = 29/75 (38%), Positives = 45/75 (59%)
 Frame = +3

Query: 38  NDPHVTEIANFAVTEYDRRSGAKLKFEKVINGESQVVAGTNYRLTLSASDGSYSKNYEAV 97
           N   +  +A FAV E++ +  A L+F +V+N + +VV+GT Y +TL   DG   K YEA 
Sbjct: 114 NSVEIDNLAIFAVQEHNIKQNAVLEFVRVLNAKKKVVSGTLYDITLETKDGGKQKVYEAK 293

Query: 98  VWEKIWQHFRNLTSF 112
           + EK W +F+ +  F
Sbjct: 294 ILEKPWLNFKEVQEF 338


>TC89955 similar to GP|22901842|gb|AAN10097.1 NADH dehydrogenase subunit 1
           {Acryllium vulturinum}, partial (4%)
          Length = 529

 Score = 55.8 bits (133), Expect = 2e-09
 Identities = 39/108 (36%), Positives = 64/108 (59%), Gaps = 1/108 (0%)
 Frame = +1

Query: 6   LLLVLLFVVVLFSYAAARNQFAPGGWSPIDDINDPHVTEIANFAVTEYDRR-SGAKLKFE 64
           L+L++LF  V  + A   N+          +++DP + +IA F VTE++++ + AKLKFE
Sbjct: 76  LVLIVLFASVATNQALNINRRV--------NVSDPQMIDIAKFTVTEHNKQVTEAKLKFE 231

Query: 65  KVINGESQVVAGTNYRLTLSASDGSYSKNYEAVVWEKIWQHFRNLTSF 112
           K++ G   +   T Y L +SA++GS S  Y+++V+E    HF NL  F
Sbjct: 232 KLLGG---LTDETVYILAISANNGSASNIYDSLVYESPPNHF-NLKYF 363


>TC87034 homologue to SP|P13983|EXTN_TOBAC Extensin precursor (Cell wall
           hydroxyproline-rich glycoprotein). [Common tobacco],
           partial (2%)
          Length = 644

 Score = 50.1 bits (118), Expect = 1e-07
 Identities = 37/120 (30%), Positives = 60/120 (49%), Gaps = 10/120 (8%)
 Frame = -2

Query: 5   TLLLVLLFVVVLFSYAAARNQFAPGGWSPIDDIN-DPHVTEIANFAVTEYDRRSGAK--- 60
           TL +V+  ++ + S A+   +   G  + I D+  +  V E+  FAV EY+ + G     
Sbjct: 577 TLTIVITTLLCILSTASC-GRVIVGARTEISDVGTNKEVQELGKFAVKEYNYKQGLNNGG 401

Query: 61  ----LKFEKVINGESQVVAGTNYRLTLSASD-GSYSKNYEAVVWEKIWQH-FRNLTSFVP 114
               LKF +V+  E QVV+G  Y L +SA D     + + +VV  K W H ++ +  F P
Sbjct: 400 GGEGLKFVEVVEAEQQVVSGMKYYLNISAVDHNGVQRMFNSVVVVKPWLHQYKKVIHFGP 221


>BI310700 weakly similar to GP|21592712|gb| cystatin-like protein
           {Arabidopsis thaliana}, partial (26%)
          Length = 792

 Score = 49.3 bits (116), Expect = 2e-07
 Identities = 35/110 (31%), Positives = 55/110 (49%), Gaps = 9/110 (8%)
 Frame = +2

Query: 5   TLLLVLLFVVVLFSYAAARNQFAPGGWSPIDDIN-DPHVTEIANFAVTEYDRRSGAK--- 60
           TL +V+  ++ + S A+   +   G  + I D+  +  V E+  FAV EY+ + G     
Sbjct: 110 TLTIVITTLLCILSTASC-GRVIVGARTEISDVGTNKEVQELGKFAVKEYNYKQGLNNGG 286

Query: 61  ----LKFEKVINGESQVVAGTNYRLTLSASD-GSYSKNYEAVVWEKIWQH 105
               LKF +V+  E QVV+G  Y L +SA D     + + +VV  K W H
Sbjct: 287 GGEGLKFVEVVEAEQQVVSGMKYYLNISAVDHNGVQRMFNSVVVVKPWLH 436


>BI311369 similar to GP|11596186|gb| cystatin-like protein {Citrus x
          paradisi}, partial (17%)
          Length = 283

 Score = 46.6 bits (109), Expect = 1e-06
 Identities = 21/26 (80%), Positives = 23/26 (87%)
 Frame = +1

Query: 58 GAKLKFEKVINGESQVVAGTNYRLTL 83
          G  LKFEKV+ GESQVVAGTNYRLT+
Sbjct: 7  GTDLKFEKVVKGESQVVAGTNYRLTI 84


>AJ502739 similar to GP|10119914|gb brain otoferlin {Mus musculus}, partial
          (1%)
          Length = 478

 Score = 30.0 bits (66), Expect = 0.14
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = +2

Query: 60 KLKFEKVINGESQVVAGTNYRLTLSASDGSY 90
          KLK + V +GES+  +G NYRL+L  +  +Y
Sbjct: 17 KLKLKVVRSGESKDASGVNYRLSLCNNSHNY 109


>TC77500 weakly similar to SP|P21747|EA92_VICFA Embryonic abundant protein
           USP92 precursor. [Broad bean] {Vicia faba}, partial
           (40%)
          Length = 1128

 Score = 28.9 bits (63), Expect = 0.30
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = +3

Query: 60  KLKFEKVINGESQVVAGTNYRLTLSASDGS 89
           ++ FEKV+    QV A T Y + L ASDGS
Sbjct: 471 RMNFEKVVFYCHQVNASTTYMVPLLASDGS 560


>TC76471 similar to PIR|T51392|T51392 probable phytochelatin synthetase -
           Arabidopsis thaliana, partial (94%)
          Length = 1772

 Score = 28.5 bits (62), Expect = 0.39
 Identities = 19/60 (31%), Positives = 29/60 (47%), Gaps = 7/60 (11%)
 Frame = +1

Query: 6   LLLVLLFVVVLFSYAAARNQFAPGG-----WSPIDDINDPHVTEI--ANFAVTEYDRRSG 58
           LL+  + V+VLFSYAAA +   P G     W  +    D +V  +  +NF +  +    G
Sbjct: 151 LLISAICVIVLFSYAAAYDPLDPNGNITIKWDVVSWTADGYVAAVTMSNFQMYRHIMNPG 330


>TC89627 weakly similar to GP|17529290|gb|AAL38872.1 putative pectin
           methylesterase {Arabidopsis thaliana}, partial (33%)
          Length = 1289

 Score = 27.3 bits (59), Expect = 0.88
 Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
 Frame = +1

Query: 15  VLFSYAAARNQFAPGGWSPIDDINDPHVTEIANFAVTEYDRRSGAKLKFEKVING-ESQV 73
           V+FSY    N   P GW   +D           +  +     +  ++ + +++N  E+QV
Sbjct: 904 VVFSYTYMDNSVLPKGWEDWNDTKRYMNAYYGEYKCSGPGSNTAGRVPWARMLNDKEAQV 1083

Query: 74  VAGTNY 79
             GT Y
Sbjct: 1084FIGTQY 1101


>BQ144829 
          Length = 320

 Score = 25.4 bits (54), Expect = 3.3
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = +3

Query: 23  RNQFAPGGWSP 33
           R  FAPGGWSP
Sbjct: 102 RPSFAPGGWSP 134


>BF642440 similar to GP|4874298|gb| expressed protein {Arabidopsis thaliana},
           partial (53%)
          Length = 639

 Score = 25.0 bits (53), Expect = 4.4
 Identities = 16/67 (23%), Positives = 33/67 (48%)
 Frame = -2

Query: 20  AAARNQFAPGGWSPIDDINDPHVTEIANFAVTEYDRRSGAKLKFEKVINGESQVVAGTNY 79
           AAA   FAPG W  I ++++ ++  +   + +    ++ +K  F  +  G  ++   +  
Sbjct: 434 AAATALFAPGTWYFICNLDNQYLA*VLELSAS----KASSKFSFAVLRRGMRRLSLSSQ* 267

Query: 80  RLTLSAS 86
            +TLS S
Sbjct: 266 SMTLSTS 246


>TC85222 homologue to SP|P34922|G3PC_PEA Glyceraldehyde 3-phosphate
          dehydrogenase  cytosolic (EC 1.2.1.12). [Garden pea]
          {Pisum sativum}, complete
          Length = 1415

 Score = 25.0 bits (53), Expect = 4.4
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +2

Query: 3  NPTLLLVLLFVVVLFSYAAARNQFAPGGWSPIDDIN 38
          N  L LVL  + +LF Y  + + F   GW    D N
Sbjct: 20 NRLLFLVLSAITLLFYYFTSSSLFFSHGWCQDQDRN 127


>TC79565 similar to SP|Q9ZQ70|WRK3_ARATH Probable WRKY transcription factor 3
            (WRKY DNA-binding protein 3). [Mouse-ear cress], partial
            (35%)
          Length = 1602

 Score = 25.0 bits (53), Expect = 4.4
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -2

Query: 90   YSKNYEAVVWEKIWQHFRNLTSFVP 114
            Y++N+    W K+W H +   S  P
Sbjct: 1550 YTRNWTYRPWSKLWPHIQKQKSIKP 1476


>BE325280 similar to GP|14334426|gb unknown protein {Arabidopsis thaliana},
           partial (30%)
          Length = 595

 Score = 25.0 bits (53), Expect = 4.4
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +1

Query: 30  GWSPIDDINDPHVTEIANFAVTEYDRRSGAK 60
           GW+P+ +      TEIA   V  + R + AK
Sbjct: 124 GWNPLQEALCRRATEIATILVRHHHRSAWAK 216


>TC93880 similar to GP|19310478|gb|AAL84973.1 AT3g05350/T12H1_32
           {Arabidopsis thaliana}, partial (18%)
          Length = 728

 Score = 25.0 bits (53), Expect = 4.4
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +1

Query: 83  LSASDGSYSKNYEAVVWEKI 102
           LS ++  +  NY +VVWEK+
Sbjct: 286 LSTTEIDWLNNYHSVVWEKV 345


>BI312045 similar to GP|22324956|gb| putative disease resistant protein
           {Oryza sativa (japonica cultivar-group)}, partial (1%)
          Length = 800

 Score = 24.6 bits (52), Expect = 5.7
 Identities = 13/31 (41%), Positives = 17/31 (53%)
 Frame = -1

Query: 84  SASDGSYSKNYEAVVWEKIWQHFRNLTSFVP 114
           S S+G  SKN  + V  KIW   R   +F+P
Sbjct: 671 SESEGQKSKNQLSPVKIKIWSLVRFPIAFIP 579


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.320    0.135    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,675,352
Number of Sequences: 36976
Number of extensions: 40373
Number of successful extensions: 255
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 251
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 252
length of query: 117
length of database: 9,014,727
effective HSP length: 93
effective length of query: 24
effective length of database: 5,575,959
effective search space: 133823016
effective search space used: 133823016
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)


Medicago: description of AC148653.2