BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148652.2 - phase: 0 /pseudo
(1145 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CB065285 weakly similar to PIR|A84500|A84 probable retroelement ... 374 e-104
AJ497987 weakly similar to GP|9927273|dbj Similar to Arabidopsis... 298 6e-81
AL367832 weakly similar to GP|14091845|gb Putative retroelement ... 246 3e-65
BG587145 similar to PIR|H86337|H8 protein F5M15.26 [imported] - ... 147 7e-58
TC86737 weakly similar to GP|6683624|dbj|BAA89272.1 Pol {Alterna... 172 5e-43
BG587101 similar to GP|6691191|gb F7F22.15 {Arabidopsis thaliana... 115 7e-26
BG586308 weakly similar to PIR|F84528|F8 probable retroelement p... 59 1e-17
BG644693 weakly similar to GP|18767374|g Putative 22 kDa kafirin... 80 4e-15
TC77595 weakly similar to PIR|T18350|T18350 probable pol polypro... 77 4e-14
BG587127 weakly similar to PIR|H84506|H84 probable retroelement ... 65 2e-10
BG586326 similar to PIR|G84493|G8 probable retroelement pol poly... 52 1e-06
CA860311 weakly similar to GP|7289872|gb|A CG17427 gene product ... 51 2e-06
TC83629 weakly similar to GP|6692261|gb|AAF24611.1| putative RNa... 50 6e-06
BF647164 weakly similar to GP|6691191|gb F7F22.15 {Arabidopsis t... 49 8e-06
TC92306 46 7e-05
BG644740 similar to PIR|A84460|A84 probable retroelement pol pol... 45 2e-04
BG454871 weakly similar to GP|10140673|g putative gag-pol polypr... 41 0.003
BG644720 40 0.007
BG587170 similar to PIR|F86470|F8 probable retroelement polyprot... 39 0.015
CB892255 39 0.015
>CB065285 weakly similar to PIR|A84500|A84 probable retroelement gag/pol
polyprotein [imported] - Arabidopsis thaliana, partial
(2%)
Length = 592
Score = 374 bits (961), Expect = e-104
Identities = 177/197 (89%), Positives = 187/197 (94%)
Frame = -2
Query: 545 KSKDCEEPLIGEGPDPDSKWGLVFDGDVNAYGKGIGAVIVSPQGHHIPFTARILFECTNN 604
KSKDCEEPLIGEGPDP+SKWGLVFDG VNAYGKGIGAVIVSPQGH+IPFTARILFECTNN
Sbjct: 591 KSKDCEEPLIGEGPDPNSKWGLVFDGAVNAYGKGIGAVIVSPQGHYIPFTARILFECTNN 412
Query: 605 MAEYEACIFGIEEAIDMRIKHLNIYGDSALVINQIKGEWETHHAKLIPYRDYARRLLTYF 664
MAEYEACIFGIEEAIDMRIKHL+IYGDSALVINQIKGEWETHHA LIPYRDYARRLLTYF
Sbjct: 411 MAEYEACIFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHANLIPYRDYARRLLTYF 232
Query: 665 TKVELHHIPRDENQMADALGTISSMFRVNHWNDVPIIKVQRLERPSHVFTIEDMINRADG 724
TKVELHHIPRDENQMADAL T+SSMFRVNHWNDVPIIKVQRLERPSHVF I ++I++
Sbjct: 231 TKVELHHIPRDENQMADALATLSSMFRVNHWNDVPIIKVQRLERPSHVFAIGNVIDQTGE 52
Query: 725 NVVDDRPWYYDTKQFLL 741
NVVD +PWYYD KQFL+
Sbjct: 51 NVVDYKPWYYDIKQFLV 1
>AJ497987 weakly similar to GP|9927273|dbj Similar to Arabidopsis thaliana
chromosome II BAC F26H6; putative retroelement pol
polyprotein, partial (1%)
Length = 636
Score = 298 bits (764), Expect = 6e-81
Identities = 132/167 (79%), Positives = 154/167 (92%)
Frame = -2
Query: 449 KTCCALVWAAKRLRHYLVNHTTWLISRMDQIKYIFEKPAVTRKIARWQMLLSEYDIVFKA 508
KTCCAL WAAKRLRHY++NHTTWL+S+MD IKYIFEKPA+T +IARWQMLLSEYDI +++
Sbjct: 635 KTCCALAWAAKRLRHYMINHTTWLVSKMDPIKYIFEKPALTGRIARWQMLLSEYDIEYRS 456
Query: 509 QKAIKGSILADHLAYQPLDDYQPIKFDFPDEDIMYLKSKDCEEPLIGEGPDPDSKWGLVF 568
QKAIKGSILADHLA+QPL+DY+PIKFDFPDE+IMYLK KDC+EPL GEGPDPDS WGL+F
Sbjct: 455 QKAIKGSILADHLAHQPLEDYRPIKFDFPDEEIMYLKMKDCDEPLFGEGPDPDSVWGLIF 276
Query: 569 DGDVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYEACIFGI 615
DG VN YG GIGAV+++P+G HIPFTAR+ F+CTNN+AEYEACI GI
Sbjct: 275 DGAVNVYGNGIGAVLLTPKGAHIPFTARLRFDCTNNIAEYEACIMGI 135
Score = 48.1 bits (113), Expect = 2e-05
Identities = 20/24 (83%), Positives = 23/24 (95%)
Frame = +2
Query: 415 CVLGQQDETGKKEHAIYYLSKKFT 438
CVLGQQDETG+KEHAIYYLS+K +
Sbjct: 38 CVLGQQDETGRKEHAIYYLSRKLS 109
>AL367832 weakly similar to GP|14091845|gb Putative retroelement {Oryza
sativa}, partial (2%)
Length = 384
Score = 246 bits (629), Expect = 3e-65
Identities = 123/128 (96%), Positives = 124/128 (96%)
Frame = -1
Query: 27 QERKAIEPHQEEIELINLGTEENKREIKVGAALEEGVKRKIFQLLREYPDIFAWSYEDMP 86
QERKAI+PHQEEIELINLGTEENKREIKVGAALEEGVKRKIFQLLREY DIFA SYEDMP
Sbjct: 384 QERKAIQPHQEEIELINLGTEENKREIKVGAALEEGVKRKIFQLLREYLDIFACSYEDMP 205
Query: 87 GLDPKIVEHRIPTKPEYPPVRQKLRRTHPDMALKIKSEVQKQIDAGFLMTVEYPEWVANI 146
GLDPKIVEHRIPTKPE PPVR KLRRTHPDMALKIKSEVQKQIDAGFLMTVEYPEWVANI
Sbjct: 204 GLDPKIVEHRIPTKPECPPVR*KLRRTHPDMALKIKSEVQKQIDAGFLMTVEYPEWVANI 25
Query: 147 VPVPKKDG 154
VPVPKKDG
Sbjct: 24 VPVPKKDG 1
>BG587145 similar to PIR|H86337|H8 protein F5M15.26 [imported] - Arabidopsis
thaliana, partial (13%)
Length = 763
Score = 147 bits (372), Expect(2) = 7e-58
Identities = 69/136 (50%), Positives = 100/136 (72%)
Frame = +2
Query: 206 MSPEDREKTSFITP*GTFCYKVMPFGLINAGATY*RGMTTLFHDMIHKEVEVYVDDMIVK 265
M P+D EKT+FIT GT+CYKVMPFGL NAG+TY R + +F D + +EVY+DDM+VK
Sbjct: 2 MHPDDLEKTAFITDRGTYCYKVMPFGLKNAGSTYQRLVNRMFADKLGNTMEVYIDDMLVK 181
Query: 266 SKDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIR 325
S H+ +L + F+ L +Y ++LNP KCTFGV SG+ LG+IV+Q+GIEV+P ++ AI
Sbjct: 182 SLRATDHLNHLKE*FKTLDEYIMKLNPAKCTFGVTSGEFLGYIVTQQGIEVNPKQITAIL 361
Query: 326 EMPAPQTEKQVRGFLG 341
++P+P+ ++V+ G
Sbjct: 362 DLPSPKNSREVQRLTG 409
Score = 96.3 bits (238), Expect(2) = 7e-58
Identities = 48/120 (40%), Positives = 75/120 (62%)
Frame = +3
Query: 341 GRLNYISRFISHMTATCGPIFKLLRKNQPIVWNDECQGAFDSIKNYLLEPPILVPPVEGR 400
GR+ ++RFIS T C P +KLL N+ VW+++C+ AF+ +K YL PP+L P G
Sbjct: 408 GRIAALNRFISRSTDKCLPFYKLLCGNKRFVWDEKCEEAFEQLKQYLTTPPVLSKPEAGD 587
Query: 401 PLIMYLSVFDESVGCVLGQQDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALVWAAKR 460
L +Y+++ +V VL ++D +K I+Y SK+ TD ETRY LEK A++ +A++
Sbjct: 588 TLSLYIAISSTAVSSVLIREDRGEQK--PIFYTSKRMTDPETRYPTLEKMAFAVITSARK 761
>TC86737 weakly similar to GP|6683624|dbj|BAA89272.1 Pol {Alternaria
alternata}, partial (21%)
Length = 1540
Score = 172 bits (437), Expect = 5e-43
Identities = 121/398 (30%), Positives = 196/398 (48%), Gaps = 7/398 (1%)
Frame = +1
Query: 70 LLREYPDIFAWSYEDMPGLDPKIVEHRIPTKPEY----PPVRQ-KLRRTHPDMALKIKSE 124
+L E+PD+F +++H IP P+ PP+ L L +K
Sbjct: 343 VLEEFPDLFNPEKAYQVPASRGLLDHAIPLIPDKDGNDPPLPWGPLYGMSRQELLVLKKT 522
Query: 125 VQKQIDAGFLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLIKASPKDNFPLPHIDVLVD 184
++ +D GF+ A ++ V K G +R CVD+R L + KD +PLP I +
Sbjct: 523 LEDLLDKGFIKASGSAAG-APVLFVRKPGGGIRFCVDYRALNAITKKDRYPLPLISETLR 699
Query: 185 NTAQSKVFSFMDGFSGYNQIKMSPEDREKTSFITP*GTFCYKVMPFGLINAGATY*RGMT 244
A ++ F+ +D + ++++++ ED+EKT+F T G F + V PFGL A AT+ R +
Sbjct: 700 RVAGARWFTKLDVVAAFHKMRIKDEDQEKTAFRTRYGLFEWIVCPFGLTGAPATFQRYIN 879
Query: 245 TLFHDMIHKEVEVYVDDMIV-KSKDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGK 303
H+ + V Y+DD+++ + ++ H + ++ RL L L+P KC F V + K
Sbjct: 880 KTLHEFLDDFVTAYIDDVLIYTTGSKKDHEAQVRRVLRRLADAGLSLDPKKCEFSVTTVK 1059
Query: 304 LLGFIVSQ-KGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFK 362
+GFI++ KG+ DP K+ AIR+ P + K R FLG NY FI + P+ +
Sbjct: 1060YVGFILTAGKGVSCDPLKLAAIRDWLPPGSVKGARSFLGFCNYYKDFIPGYSEITEPLTR 1239
Query: 363 LLRKNQPIVWNDECQGAFDSIKNYLLEPPILVPPVEGRPLIMYLSVFDESVGCVLGQQDE 422
L RK+ P W E + AF +K E P+L + ++G VL Q+D
Sbjct: 1240LTRKDFPFRWGAEQEAAFTKLKRLFAEEPVLRMFDPEAVTTVETDCSGFALGGVLTQEDG 1419
Query: 423 TGKKEHAIYYLSKKFTDCETRYTMLEKTCCALVWAAKR 460
TG H + + S++ + E Y + +K A VWA R
Sbjct: 1420TG-AAHPVAFHSQRLSPAEYNYPIHDKELLA-VWACLR 1527
>BG587101 similar to GP|6691191|gb F7F22.15 {Arabidopsis thaliana}, partial
(10%)
Length = 624
Score = 115 bits (289), Expect = 7e-26
Identities = 63/196 (32%), Positives = 98/196 (49%)
Frame = +2
Query: 763 RFLLDGDILYKRNYDMVLLRCVDEHEAEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWM 822
R+L D LYK+ D + +RCV E E ++ H + H K+ +AG++W
Sbjct: 17 RYLWDEPFLYKQCADNIYIRCVAEEEIPGILFHCHGSNYAGHFAVSKTVSKIQQAGFWWP 196
Query: 823 TMEHDCYQHARKCHKCQIYADKIHVPPHALNVISSPWPFSMWGIDMIGRIEPKASNGHRF 882
TM D + KC CQ + N I F +WGID +G +N ++
Sbjct: 197 TMFKDAHSFISKCDPCQRQGNIS*RNEMPQNFILEVEVFDVWGIDFMGPFPSSYNN--KY 370
Query: 883 ILVAIDYYTKWVEAASYANVTKQVVAKFIRNNIICRYGVPSKIITDNGTNLNNNVVQALC 942
ILVA+DY +KWVEA + VV K ++ I R+GVP +I+D G++ N V + L
Sbjct: 371 ILVAVDYVSKWVEAIASPTNDATVVVKMFKSVIFPRFGVPRVVISDGGSHFINKVFEKLL 550
Query: 943 EEFKIEHHISSPYRPQ 958
++ + H +++ Y PQ
Sbjct: 551 KKNGVRHKVATAYHPQ 598
>BG586308 weakly similar to PIR|F84528|F8 probable retroelement pol polyprotein
[imported] - Arabidopsis thaliana, partial (7%)
Length = 686
Score = 59.3 bits (142), Expect(2) = 1e-17
Identities = 38/122 (31%), Positives = 68/122 (55%), Gaps = 4/122 (3%)
Frame = -3
Query: 992 LHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSL---RVIMEAKLSEAEWCQSRYDQL 1048
L +RT R +T +TPFS+ + +EA+ P EV + SL R+ +L+ ++ L
Sbjct: 462 LWSHRTNPRGATKSTPFSMAHRVEAMAPAEVNVTSL*RSRMPQNIELNN----DRLFNAL 295
Query: 1049 NLVEEKRMDAMARGQSYQARMKTAFDKKVRPREFKGGELVLKRRISQQPD-PRGKWTPNY 1107
+EE+R A+ R Q+YQ ++++ ++K V+ + K G++VL + + GK N+
Sbjct: 294 ETIEERRDQALLRIQNYQHQIESYYNKTVKSQPLKLGDIVLCKVFENTKELNAGKLGTNW 115
Query: 1108 EG 1109
EG
Sbjct: 114 EG 109
Score = 50.1 bits (118), Expect(2) = 1e-17
Identities = 22/52 (42%), Positives = 35/52 (67%)
Frame = -2
Query: 919 YGVPSKIITDNGTNLNNNVVQALCEEFKIEHHISSPYRPQMNGAVEAANKNI 970
+G+P +I+TDNG++ +N + CE ++I + +SP PQ NG EA+NK I
Sbjct: 685 HGLPYEIVTDNGSHFISNKFREFCERWRIRLNTASPRYPQSNGQAEASNKII 530
>BG644693 weakly similar to GP|18767374|g Putative 22 kDa kafirin cluster;
Ty3-Gypsy type {Oryza sativa}, partial (15%)
Length = 716
Score = 80.1 bits (196), Expect = 4e-15
Identities = 65/230 (28%), Positives = 108/230 (46%), Gaps = 5/230 (2%)
Frame = +2
Query: 93 VEHRIPTKPEYPPVRQKLRRTHPDMALKIKSEVQKQIDAGFLMTVEYPEWVANIVPVPKK 152
++ I P P+ R +P +K +++ ++ GF+ YP V ++ + KK
Sbjct: 35 IDFGIDLLPNMNPI*IPSYRINPLKLKVLKLQLKDLLEKGFIQPSIYP*GVV-VLFLKKK 211
Query: 153 DGKVRMCVDFRDLIKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDRE 212
DG +RM +D+ L + K +PLP ID L DN SK F +D G +Q ++ ED
Sbjct: 212 DGFLRMSIDYPQLNNVNIKIKYPLPLIDELFDNLQGSKWFFKIDLRLG*HQHRVIGEDVP 391
Query: 213 KTSFITP*GTFCYKVMPFGLINAGATY*RGMTTLFHDMIHKEVEVYVDDMIVKSKDEEQH 272
KT+F G + VM FG N + M +F D + V V+ +D+++ SK+E +H
Sbjct: 392 KTAFRIRYGHYEILVMSFG*TNPPMAFMELMNRVFQDYLDSLVIVFSNDILIYSKNENEH 571
Query: 273 VEYLTKMFERLRKYKLRLNPNKCTFG-----VRSGKLLGFIVSQKGIEVD 317
+L + L+ L C V G ++S +G++VD
Sbjct: 572 ENHLRLALKVLKDIGL------CQISYV*ILVEVGFFSLHVISGEGLKVD 703
>TC77595 weakly similar to PIR|T18350|T18350 probable pol polyprotein - rice
blast fungus gypsy retroelement (fragment), partial (14%)
Length = 1708
Score = 77.0 bits (188), Expect = 4e-14
Identities = 63/291 (21%), Positives = 119/291 (40%), Gaps = 6/291 (2%)
Frame = +2
Query: 791 QLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMTMEHDCYQHARKCHKCQIYADKIHVPPH 850
+L+ + HD T H G + +++ ++W + R C C IH+
Sbjct: 176 KLVQESHDSTAAGHP-GRNGTLEIVSRKFFWPGQSQTVRRFVRNCDVC----GGIHIWRQ 340
Query: 851 ALNVISSPWPF-----SMWGIDMIGRIEPKASNGHRFILVAIDYYTKWVEAASYANVTKQ 905
A P P S +D I + P G +++ V +D +K V + +
Sbjct: 341 AKRGFLKPLPVPNRLHSDLSMDFITSLPPTRGRGSQYLWVIVDRLSKSVTLEEMDTMEAE 520
Query: 906 VVAKFIRNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHISSPYRPQMNGAVEA 965
A+ + +G+P I++D G+N + C + +S+ Y PQ +G E
Sbjct: 521 ACAQRFLSCHYRFHGMPQSIVSDRGSNWVGRFWREFCRLTGVTQLLSTSYHPQTDGGTER 700
Query: 966 ANKNIQKIVQKMVTTYKD-WHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEI 1024
N+ IQ +++ V +D W ++LP R SS GATPF + +G V P+
Sbjct: 701 WNQEIQAVLRAYVCWSQDNWGDLLPTVQLALRNRHNSSIGATPFFVEHGYH-VDPIPTVE 877
Query: 1025 PSLRVIMEAKLSEAEWCQSRYDQLNLVEEKRMDAMARGQSYQARMKTAFDK 1075
+ V+ E + + + D ++ + + A R ++ + + D+
Sbjct: 878 DTGGVVSEGEAAAQLLVKRMKDVTGFIQAEIVAAQQRSEASANKRRCPADR 1030
>BG587127 weakly similar to PIR|H84506|H84 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana, partial
(13%)
Length = 415
Score = 64.7 bits (156), Expect = 2e-10
Identities = 36/109 (33%), Positives = 55/109 (50%)
Frame = +3
Query: 580 GAVIVSPQGHHIPFTARILFECTNNMAEYEACIFGIEEAIDMRIKHLNIYGDSALVINQI 639
G + SP + + R+ F +NN YEA I G+ A ++I++++ Y DS LV +Q
Sbjct: 3 GIRLTSPTNEILKQSFRLEFHASNNETNYEALIAGVRLAHGLKIRNIHAYCDSQLVASQF 182
Query: 640 KGEWETHHAKLIPYRDYARRLLTYFTKVELHHIPRDENQMADALGTISS 688
GE+E + Y ++L L IPR EN ADAL ++S
Sbjct: 183 SGEYEARDELMDTYLKLVQKLAQKLDYFALTRIPRSENVQADALAALAS 329
>BG586326 similar to PIR|G84493|G8 probable retroelement pol polyprotein
[imported] - Arabidopsis thaliana, partial (13%)
Length = 736
Score = 52.4 bits (124), Expect = 1e-06
Identities = 42/140 (30%), Positives = 65/140 (46%), Gaps = 3/140 (2%)
Frame = +2
Query: 391 PILVPPVEGRPLIMYLSVFDESV---GCVLGQQDETGKKEHAIYYLSKKFTDCETRYTML 447
PILV P LI Y+ D S+ GCVL Q E I Y S++ E Y
Sbjct: 17 PILVLP----ELITYVVYTDASITGLGCVLTQH------EKVIAYASRQLRKHEGNYPTH 166
Query: 448 EKTCCALVWAAKRLRHYLVNHTTWLISRMDQIKYIFEKPAVTRKIARWQMLLSEYDIVFK 507
+ A+V+A K R YL + + +KYIF +P + + RW +++YD+
Sbjct: 167 DLEMAAVVFALKIWRSYLYGAKVQIHTDHKSLKYIFTQPELNLRQRRWMEFVADYDLDIT 346
Query: 508 AQKAIKGSILADHLAYQPLD 527
K +++AD L+ + +D
Sbjct: 347 YYPG-KANLVADALSRRRVD 403
>CA860311 weakly similar to GP|7289872|gb|A CG17427 gene product {Drosophila
melanogaster}, partial (20%)
Length = 192
Score = 51.2 bits (121), Expect = 2e-06
Identities = 24/56 (42%), Positives = 32/56 (56%)
Frame = +1
Query: 410 DESVGCVLGQQDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALVWAAKRLRHYL 465
D +G L Q+DE EH I Y S+ T E YT++E+ C A +WA + RHYL
Sbjct: 7 DWGIGAGLSQKDEENH-EHPIAYASRLLTAAERNYTVVERECLAAIWAIRNFRHYL 171
>TC83629 weakly similar to GP|6692261|gb|AAF24611.1| putative RNase H
{Arabidopsis thaliana}, partial (21%)
Length = 1071
Score = 49.7 bits (117), Expect = 6e-06
Identities = 34/113 (30%), Positives = 51/113 (45%)
Frame = +2
Query: 565 GLVFDGDVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYEACIFGIEEAIDMRIK 624
G V+ ++N G GA++++ G + + L T AEY A + G++ A K
Sbjct: 563 G*VW*SNINRGPAGAGALLLAEDGSLLYGFRQGLGHQTKESAEYRALLLGLKHASMKGFK 742
Query: 625 HLNIYGDSALVINQIKGEWETHHAKLIPYRDYARRLLTYFTKVELHHIPRDEN 677
++ GDS LVINQI W+ L A L F + HI R+ N
Sbjct: 743 YVTAKGDSELVINQILDPWKIKDEHLKKLCAEALELSDNFHSFRIQHISRERN 901
>BF647164 weakly similar to GP|6691191|gb F7F22.15 {Arabidopsis thaliana},
partial (6%)
Length = 469
Score = 49.3 bits (116), Expect = 8e-06
Identities = 35/101 (34%), Positives = 52/101 (50%), Gaps = 3/101 (2%)
Frame = +1
Query: 1047 QLNLVEEKRMDAMARGQSYQARMKTAFDKKVRPREFKGGELVL--KRRISQQPDPRGKWT 1104
+LN +EE R+DA + Y+ R K D+++ REF+ GELVL R+ P GK
Sbjct: 103 ELNELEELRLDAYENAKIYKERTKKWHDRRIIRREFREGELVLLFNSRLKLFP---GKLR 273
Query: 1105 PNYEGPYVVKKAFSGGAL-ILTHMDGVELPNPVNADIVKKY 1144
++ GP+ VK GA+ + + G P VN +K Y
Sbjct: 274 SHWSGPFQVKNVMPSGAVEVWSESTG---PFTVNGQRLKHY 387
>TC92306
Length = 521
Score = 46.2 bits (108), Expect = 7e-05
Identities = 23/71 (32%), Positives = 36/71 (50%)
Frame = +2
Query: 612 IFGIEEAIDMRIKHLNIYGDSALVINQIKGEWETHHAKLIPYRDYARRLLTYFTKVELHH 671
I G+ EA + +H+++ GD V Q G W+ ++ L + A L + F V + H
Sbjct: 2 ILGLNEARNQGYEHVHVRGDFQXVCKQFXGSWKVNNPNLRNLCNXAVELKSNFKSVSVEH 181
Query: 672 IPRDENQMADA 682
+PR N ADA
Sbjct: 182 VPRGXNXAADA 214
>BG644740 similar to PIR|A84460|A84 probable retroelement pol polyprotein
[imported] - Arabidopsis thaliana, partial (4%)
Length = 754
Score = 45.1 bits (105), Expect = 2e-04
Identities = 21/49 (42%), Positives = 29/49 (58%)
Frame = -1
Query: 144 ANIVPVPKKDGKVRMCVDFRDLIKASPKDNFPLPHIDVLVDNTAQSKVF 192
A ++ V KKDG RMC+D+R K + K+ +PLP ID L D + F
Sbjct: 238 AALLFVRKKDGYFRMCIDYRQFNKVTTKNKYPLPRIDNLFDKIQEDCYF 92
>BG454871 weakly similar to GP|10140673|g putative gag-pol polyprotein {Oryza
sativa (japonica cultivar-group)}, partial (7%)
Length = 674
Score = 40.8 bits (94), Expect = 0.003
Identities = 22/66 (33%), Positives = 33/66 (49%), Gaps = 1/66 (1%)
Frame = +2
Query: 951 ISSPYRPQMNGAVEAANKNIQKIVQ-KMVTTYKDWHEMLPYALHGYRTTVRSSTGATPFS 1009
+SS Y P +G EA NK + ++ M T W + P+A + Y T+ S TPF
Sbjct: 80 MSSAYHP*SDGQSEALNKGXEMYLRCLMFTDPLKWSKAFPWAEYWYNTSYNISAAMTPFK 259
Query: 1010 LVYGME 1015
+YG +
Sbjct: 260 ALYGRD 277
>BG644720
Length = 678
Score = 39.7 bits (91), Expect = 0.007
Identities = 32/112 (28%), Positives = 49/112 (43%)
Frame = -3
Query: 769 DILYKRNYDMVLLRCVDEHEAEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMTMEHDC 828
+ LY ++ VLL C+ E E Q H G+H + + + R GYYW T
Sbjct: 358 ETLYI*LFEGVLL*CLGEEETIQAFQ*AHSRVCGSHKS--KLYFHIKRMGYYWNT----- 200
Query: 829 YQHARKCHKCQIYADKIHVPPHALNVISSPWPFSMWGIDMIGRIEPKASNGH 880
K + A+ I PP L+ + F W +++ G + PK+S GH
Sbjct: 199 ----*IMLKGALLANFIQQPPEVLHPTITS*LFESWELNVFG-LFPKSSGGH 59
>BG587170 similar to PIR|F86470|F8 probable retroelement polyprotein
[imported] - Arabidopsis thaliana, partial (13%)
Length = 718
Score = 38.5 bits (88), Expect = 0.015
Identities = 23/103 (22%), Positives = 48/103 (46%), Gaps = 2/103 (1%)
Frame = -3
Query: 878 NGHRFILVAIDYYTKWVEAASYANVTKQVVA-KFIRNNIICRYGVPSKII-TDNGTNLNN 935
+ H++ + ID +K+ + + + A K + + Y KI+ +DNG +
Sbjct: 383 DNHKYFVTFIDEKSKYTWLTLIPSKDRVIDAFKNFQAYVTNHYHAKIKILRSDNGGEYTS 204
Query: 936 NVVQALCEEFKIEHHISSPYRPQMNGAVEAANKNIQKIVQKMV 978
++ + I H S PY PQ NG + NK++ ++ + ++
Sbjct: 203 YAFKSHLDHHGILHQTSCPYTPQQNGVAKRKNKHLMEVARSLM 75
>CB892255
Length = 853
Score = 38.5 bits (88), Expect = 0.015
Identities = 29/98 (29%), Positives = 47/98 (47%)
Frame = +1
Query: 1011 VYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLVEEKRMDAMARGQSYQARMK 1070
V+ ++A+ ++V++ S+ V +AK+ C R ++RG S +
Sbjct: 31 VFNVKALCHMKVKVLSMEVPKKAKID*T*KCYCRVP---------WTVISRG*SKYST-- 177
Query: 1071 TAFDKKVRPREFKGGELVLKRRISQQPDPRGKWTPNYE 1108
KK RPRE + VLK + P+ RGKW PNY+
Sbjct: 178 ----KKARPRECQESGFVLKNML---PNSRGKWMPNYK 270
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.322 0.139 0.427
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,472,588
Number of Sequences: 36976
Number of extensions: 513091
Number of successful extensions: 2512
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 2256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2505
length of query: 1145
length of database: 9,014,727
effective HSP length: 107
effective length of query: 1038
effective length of database: 5,058,295
effective search space: 5250510210
effective search space used: 5250510210
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)
Medicago: description of AC148652.2