BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148607.13 + phase: 0
(679 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC79090 similar to PIR|T46111|T46111 probable transposase - Arab... 178 7e-45
TC79089 weakly similar to PIR|T46111|T46111 probable transposase... 167 1e-41
BE204282 weakly similar to PIR|C85069|C850 hypothetical protein ... 164 1e-40
AW329412 weakly similar to GP|11994591|db Ac transposase-like pr... 87 2e-17
TC81149 weakly similar to GP|11994591|dbj|BAB02646. Ac transposa... 80 3e-15
BE325071 similar to GP|3928077|gb|A unknown protein {Arabidopsis... 79 7e-15
TC88661 weakly similar to GP|22507085|gb|AAM97760.1 putative tra... 72 5e-13
BQ122834 weakly similar to GP|20521440|dbj hypothetical protein~... 70 3e-12
TC85109 56 5e-08
TC82347 52 1e-06
TC82295 similar to PIR|A96722|A96722 unknown protein T17F3.2 [im... 49 8e-06
TC82166 similar to GP|10140707|gb|AAG13541.1 putative Tam3-trans... 44 2e-04
TC90179 weakly similar to GP|9719456|gb|AAF97810.1| transposase ... 44 3e-04
TC80007 42 0.001
BQ751384 39 0.007
TC90414 37 0.032
BF645752 homologue to GP|22713420|gb| Unknown (protein for MGC:3... 35 0.12
TC88660 PIR|T48044|T48044 hypothetical protein T12C14.220 - Arab... 28 0.38
AL382486 32 0.80
TC87387 homologue to PIR|T47775|T47775 hypothetical protein F24I... 32 1.0
>TC79090 similar to PIR|T46111|T46111 probable transposase - Arabidopsis
thaliana, partial (28%)
Length = 1068
Score = 178 bits (451), Expect = 7e-45
Identities = 88/258 (34%), Positives = 149/258 (57%), Gaps = 8/258 (3%)
Frame = +2
Query: 406 WRRAEIMCEILKPFFTITNLISGSSYPTSNLYFGEIWKIECLIRSYLTSEDLLIQKMAEN 465
W+ EI+C LKP + N+++ ++YPT+ +F E+WK+ + + +ED I + +
Sbjct: 56 WKLVEILCTYLKPLYDAANILTTTTYPTAITFFHEVWKLHLDLARAVKNEDPFISDLTKP 235
Query: 466 MKVKFDKYWSDYNVVLAVGAVLDPTKKFNFLKFAYEKLDPLTSEEKLKKVKMTLGKLFSE 525
M K DKYW D ++ L + V+DP K ++F++ K+ + +K V + +LF E
Sbjct: 236 MYEKIDKYWRDCSLALVIAVVMDPRFKMKLVEFSFTKIYGEDAHAYVKIVDDGIHELFHE 415
Query: 526 YIKNGIP--------SNLSSSQVQPSYGGGTRITSSSYDEFEEYESQSSNSTGKSELDTY 577
Y +P N SS GGT ++ + +F+ Y ++S KSELD Y
Sbjct: 416 YATLPLPLTPAYAEEGNAGSSMKMEGSSGGTLLSDNGLTDFDAYIMETSTHQTKSELDQY 595
Query: 578 LDELRMPLSQEFDVLAFWKERSRRSPNLARMACDILSIPITTVASESAFSIGARVVNRYR 637
L+E +P +FDVL +WK + P L++MA DILSIP++TV S+S F ++ +++YR
Sbjct: 596 LEESLLPRVPDFDVLGWWKLNKLKYPTLSKMARDILSIPVSTVPSDSIFDKKSKEMDQYR 775
Query: 638 SSMKDDSVQALLCARSWL 655
SS++ ++V+AL+CA+ W+
Sbjct: 776 SSLRPETVEALVCAKDWM 829
>TC79089 weakly similar to PIR|T46111|T46111 probable transposase -
Arabidopsis thaliana, partial (36%)
Length = 942
Score = 167 bits (423), Expect = 1e-41
Identities = 97/307 (31%), Positives = 161/307 (51%), Gaps = 1/307 (0%)
Frame = +3
Query: 171 VSRNTIAKEILNVYRDEKQKLKSQLAQIRGRVCLTSDCWTACSNEGYISLTAHYVNVNWK 230
V+ NTI + + Y EKQ L ++ GR LT D WT+ + GY+ +T H+V+ +WK
Sbjct: 21 VTFNTIQGDCVATYLTEKQNLSKYFDELPGRFGLTLDMWTSSQSVGYVFITGHFVDSDWK 200
Query: 231 LESKILAFAHMEP-PHSGRDLALKVLEMLDDWGIEKKIFSITLDNASANNSMANFLKEHL 289
L+ +IL MEP P S L+ V + DW +E ++F+IT + ++ N L+ L
Sbjct: 201 LQKRILNVV-MEPCPDSDSALSHAVSACISDWNLEGRLFTITCNQPLTKVALEN-LRPLL 374
Query: 290 GLSNSLLLDGEFFHIRCSAHILNLIVQDGLKVVSDALHKIRQSVAYVRVTESRTLLFSEC 349
+ N L+ +G+ C A L+ + D L ++KIR+SV YV+ +ES F +
Sbjct: 375 SVKNPLIFNGQLLIGHCIARTLSNVAYDLLSSAQGIVNKIRESVKYVKTSESHEDKFLDL 554
Query: 350 VRIVGDIDTTIGLRLDCVTRWNSTFIMLQSALVYRRAFYSLSLRDSNFKCCPTSEEWRRA 409
+ + + L +D T+WN+T+ ML +A + F L D ++K P+ +W+
Sbjct: 555 KEHL-QVPSEKSLFIDDQTKWNTTYQMLVAASELKEVFSCLDTSDPDYKGAPSIPDWKLV 731
Query: 410 EIMCEILKPFFTITNLISGSSYPTSNLYFGEIWKIECLIRSYLTSEDLLIQKMAENMKVK 469
EI+C LKP + N++ ++YPT+ +F E+ K+ + +ED I + + M K
Sbjct: 732 EILCTYLKPLYDAANILMTTTYPTAITFFHEVXKLHLDLSRAXKNEDPFISDLTKPMYXK 911
Query: 470 FDKYWSD 476
DKY D
Sbjct: 912 IDKYXRD 932
>BE204282 weakly similar to PIR|C85069|C850 hypothetical protein AT4g05510
[imported] - Arabidopsis thaliana, partial (16%)
Length = 563
Score = 164 bits (414), Expect = 1e-40
Identities = 86/185 (46%), Positives = 118/185 (63%), Gaps = 8/185 (4%)
Frame = +3
Query: 240 HMEPPHSGRDLALKVLEMLDDWGIEKKIFSITLDNASANNSMANFLKEHLGLSNSLL--- 296
H+EP H +L+ KV+ L +WGIEK IFSIT+DNASAN+ + LK+ L +SLL
Sbjct: 3 HLEPSHDNFELSRKVIGYLQEWGIEKNIFSITMDNASANDGNSQNLKDQLCSLDSLLRTF 182
Query: 297 -----LDGEFFHIRCSAHILNLIVQDGLKVVSDALHKIRQSVAYVRVTESRTLLFSECVR 351
H +C AH+L+L+VQ+ LKVVSD L KIR S+ +V V+ SR F +CV
Sbjct: 183 ITSATAPSLEKHFKCCAHVLDLMVQESLKVVSDVLDKIRNSLKFVSVSNSRLKQFCQCVE 362
Query: 352 IVGDIDTTIGLRLDCVTRWNSTFIMLQSALVYRRAFYSLSLRDSNFKCCPTSEEWRRAEI 411
VG D++ L LD +W ST++ML+SA+ YR AF + L+D+ + CP+SEEW R E
Sbjct: 363 EVGGGDSSDSLHLDVSGKWVSTYLMLKSAIKYRSAFEHMCLKDTTYNHCPSSEEWERGEK 542
Query: 412 MCEIL 416
+CE L
Sbjct: 543 ICEFL 557
>AW329412 weakly similar to GP|11994591|db Ac transposase-like protein
{Arabidopsis thaliana}, partial (18%)
Length = 569
Score = 87.0 bits (214), Expect = 2e-17
Identities = 45/114 (39%), Positives = 68/114 (59%)
Frame = +3
Query: 542 PSYGGGTRITSSSYDEFEEYESQSSNSTGKSELDTYLDELRMPLSQEFDVLAFWKERSRR 601
PS G R +D F SQS + T S+LD YL+E P + +F++L +WK + R
Sbjct: 33 PSTSSGARDRLKGFDRFLHETSQSQSMT--SDLDKYLEEPIFPRNSDFNILNWWKVHTPR 206
Query: 602 SPNLARMACDILSIPITTVASESAFSIGARVVNRYRSSMKDDSVQALLCARSWL 655
P L+ MA D+L P++T+A E AF+ G R+++ RSS+ D+ +AL+C WL
Sbjct: 207 YPILSMMARDVLGTPMSTLAPELAFNTGGRLLDSSRSSLNPDTREALICTHDWL 368
>TC81149 weakly similar to GP|11994591|dbj|BAB02646. Ac transposase-like
protein {Arabidopsis thaliana}, partial (11%)
Length = 806
Score = 79.7 bits (195), Expect = 3e-15
Identities = 46/122 (37%), Positives = 72/122 (58%)
Frame = +1
Query: 534 NLSSSQVQPSYGGGTRITSSSYDEFEEYESQSSNSTGKSELDTYLDELRMPLSQEFDVLA 593
N SSS P +R +D+F SQ + KS+LD YL+E P + +F++L
Sbjct: 154 NGSSSLSLPWSAKDSRDRLMGFDKFLHETSQGEGA--KSDLDKYLEEPLFPRNVDFNILN 327
Query: 594 FWKERSRRSPNLARMACDILSIPITTVASESAFSIGARVVNRYRSSMKDDSVQALLCARS 653
+WK + R P L+ MA ++L IP++ VA E AF+ RV++R SS+ +VQAL+C++
Sbjct: 328 WWKVHTPRYPVLSMMARNVLGIPMSKVAPELAFNYSGRVLDRDWSSLNPATVQALVCSQD 507
Query: 654 WL 655
W+
Sbjct: 508 WI 513
>BE325071 similar to GP|3928077|gb|A unknown protein {Arabidopsis thaliana},
partial (5%)
Length = 616
Score = 78.6 bits (192), Expect = 7e-15
Identities = 48/148 (32%), Positives = 73/148 (48%), Gaps = 3/148 (2%)
Frame = +2
Query: 60 DVWLYLVKVGIVDGVEKCRCKACHKLLTCESGSGTSHLKR--HVRSCSKTIKNHDVGEMM 117
+VW Y VK+ DG E C CK C K +G SHL + H+ C +K+
Sbjct: 203 NVWNYFVKIE-ADGKELCECKTCGKQFI-SGRTGISHLNQVQHITKCPLIMKSR------ 358
Query: 118 IDVEGKLRKKKFDPMANREFLARIMITHGAPFNMVEWKVFREYQKFLN-DDCVFVSRNTI 176
+ + K D R+ + ++ I PF EW FR + KF + ++ +SR+ +
Sbjct: 359 --IAKHFKLNKIDHRMVRDSVTQMTIKSYIPFQFAEWDEFRAFTKFASFNEARSLSRDNV 532
Query: 177 AKEILNVYRDEKQKLKSQLAQIRGRVCL 204
+++ VY EK KLK QLA ++G VCL
Sbjct: 533 VADVMKVYLLEKDKLKKQLAAVKGGVCL 616
>TC88661 weakly similar to GP|22507085|gb|AAM97760.1 putative transposase
{Oryza sativa (japonica cultivar-group)}, partial (4%)
Length = 521
Score = 72.4 bits (176), Expect = 5e-13
Identities = 49/172 (28%), Positives = 86/172 (49%), Gaps = 10/172 (5%)
Frame = +1
Query: 470 FDKYWSDY---NVVLAVGAVLDPTKKFNFLKFAYEKLDPLTSE---EKLKKVKMTLGKLF 523
+DKYW + N L G + DP KF ++++++ L S+ E+ V L KL+
Sbjct: 1 YDKYWGNVVKMNQFLYFGVIFDPRYKFGYIEWSFNDLYGAGSDIAKERAGSVSDNLFKLY 180
Query: 524 ----SEYIKNGIPSNLSSSQVQPSYGGGTRITSSSYDEFEEYESQSSNSTGKSELDTYLD 579
SE+ PS ++S V+ +++ D ++++ +++L+ YL
Sbjct: 181 NLYKSEHESFVGPSGSNNSSVEQPAVPKIPSLNTTADAYKKHLKTKETIVPQNDLERYLS 360
Query: 580 ELRMPLSQEFDVLAFWKERSRRSPNLARMACDILSIPITTVASESAFSIGAR 631
+ FD+L +WK+ R P LA M D+L+ P+++VASESA S G +
Sbjct: 361 DPPENDDPSFDILTWWKKNCVRYPVLATMVRDVLATPVSSVASESAXSTGRK 516
>BQ122834 weakly similar to GP|20521440|dbj hypothetical protein~similar to
transposase {Oryza sativa (japonica cultivar-group)},
partial (10%)
Length = 553
Score = 70.1 bits (170), Expect = 3e-12
Identities = 48/171 (28%), Positives = 81/171 (47%), Gaps = 12/171 (7%)
Frame = +2
Query: 454 SEDLLIQKMAENMKVKFDKYWSDYNVVLAVGAVLDPTKKFNFLKFAYEKLDPLTSEEKLK 513
S+D + + + FD+YW D ++LAV +DP K ++ + + +E ++
Sbjct: 17 SQDPFLSSLIFPLLKNFDQYWRDSCLILAVAVAMDPRHKMKLVESTFTTIFGENAEPWIR 196
Query: 514 KVKMTLGKLFSEY--------IKNGIPSNLSSSQVQPSYG---GGTRITSSSYDEFEEYE 562
V+ L +LF +Y NG + +P G G + +FE
Sbjct: 197 IVEDGLHELFIDYNTEMLHFTATNGDDVDEIMLNTEPYEGPVDGSLFVDEGGLSDFEFNI 376
Query: 563 SQ-SSNSTGKSELDTYLDELRMPLSQEFDVLAFWKERSRRSPNLARMACDI 612
S +S KSE+D YL+E + S+EFD+L++W+E + P L+R A DI
Sbjct: 377 SDFTSMQQFKSEMDEYLEEPLLSESKEFDILSWWRENRSKYPTLSRAASDI 529
>TC85109
Length = 559
Score = 55.8 bits (133), Expect = 5e-08
Identities = 34/102 (33%), Positives = 50/102 (48%), Gaps = 1/102 (0%)
Frame = +3
Query: 60 DVWLYLVKVGIVDGVEKCRCKACHKLLTCESGSGTSHLKRHVRSCSKTIKNHDVGEMMID 119
+VW Y VKV DG E C C C ++ TC+ SG SHL H+ C +K+
Sbjct: 147 NVWNYFVKVH-KDGKEMCECMTCGRVFTCDGRSGNSHLNLHIPVCPLVMKSR-------- 299
Query: 120 VEGKLRKKKFDPMANREFLARIMITHGAPFNMVEWKV-FREY 160
+ + KK D RE + ++ I + PF++ V FRE+
Sbjct: 300 IAEHFKLKKIDHRMVRESITQMTIKNHLPFSVC*VGVKFREF 425
Score = 43.1 bits (100), Expect = 3e-04
Identities = 24/57 (42%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Frame = +1
Query: 149 FNMVEWK-VFREYQKFLN-DDCVFVSRNTIAKEILNVYRDEKQKLKSQLAQIRGRVC 203
F VEW + KF++ ++ F+SR +A +++ VY EK+KLK QLA I G VC
Sbjct: 388 FRSVEWG*NLGNFTKFVSFNEAQFLSRYGVANDVMKVYLLEKEKLKKQLAAIEGGVC 558
>TC82347
Length = 750
Score = 51.6 bits (122), Expect = 1e-06
Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Frame = +1
Query: 572 SELDTYLDELRMPLSQEFD-VLAFWKERSRRSPNLARMACDILSIPITTVASESAFSIGA 630
SELD Y R ++Q D + +W + P L+R+A DI +IP E AFS+
Sbjct: 328 SELDQYY---RQTIAQPVDNPVQWWISHRKTFPTLSRLALDIFAIPAMATDCERAFSLAK 498
Query: 631 RVVNRYRSSMKDDSVQALLCARSWLHG 657
+ R SMK +++ C ++WL G
Sbjct: 499 LTLTSQRLSMKSQTLEEAQCLQNWLRG 579
>TC82295 similar to PIR|A96722|A96722 unknown protein T17F3.2 [imported] -
Arabidopsis thaliana, partial (17%)
Length = 698
Score = 48.5 bits (114), Expect = 8e-06
Identities = 40/152 (26%), Positives = 59/152 (38%), Gaps = 40/152 (26%)
Frame = +1
Query: 79 CKACHKLLTCESGSGTSHLKRHVRSCSKTIKNHDVGEMMID----VEGKLR--------- 125
C+ C K L+ S SGTSHL+ H+ C + NH + + + EG L
Sbjct: 217 CRHCKKKLSGSSTSGTSHLRNHLIRCQRR-SNHGLAQYITAREKRKEGSLAITNFSLDQD 393
Query: 126 ---------------------------KKKFDPMANREFLARIMITHGAPFNMVEWKVFR 158
FD +R LAR++I HG P MVE FR
Sbjct: 394 PNKDDTVSLVNIKFEQAQLKDESVNTGNSNFDQRRSRFDLARMIILHGYPLAMVEHVGFR 573
Query: 159 EYQKFLNDDCVFVSRNTIAKEILNVYRDEKQK 190
+ K L V+ N + + + +Y E++K
Sbjct: 574 AFVKNLQPLFELVTLNRVEADCIEIYDKERKK 669
>TC82166 similar to GP|10140707|gb|AAG13541.1 putative Tam3-transposase
{Oryza sativa}, partial (6%)
Length = 574
Score = 43.9 bits (102), Expect = 2e-04
Identities = 19/36 (52%), Positives = 28/36 (77%)
Frame = +1
Query: 619 TVASESAFSIGARVVNRYRSSMKDDSVQALLCARSW 654
TVASESAFS R V RS +K+D+++AL+C+++W
Sbjct: 7 TVASESAFSTSGRDVTPQRSRLKEDTLEALMCSQNW 114
>TC90179 weakly similar to GP|9719456|gb|AAF97810.1| transposase
{Cryphonectria parasitica}, partial (3%)
Length = 810
Score = 43.5 bits (101), Expect = 3e-04
Identities = 20/87 (22%), Positives = 45/87 (50%)
Frame = -1
Query: 177 AKEILNVYRDEKQKLKSQLAQIRGRVCLTSDCWTACSNEGYISLTAHYVNVNWKLESKIL 236
A+E+ +Y ++ +K ++ Q +V L+ D WT+ + I++ H+++ +L
Sbjct: 393 ARELHQLYEAKRVIVKEEMRQALTKVHLSFDLWTSPNRLAIIAVFGHFISPAGNDSRYLL 214
Query: 237 AFAHMEPPHSGRDLALKVLEMLDDWGI 263
A HSG ++A + +++ DW +
Sbjct: 213 ALRRQPGAHSGENIASTICQVIRDWDL 133
>TC80007
Length = 1599
Score = 41.6 bits (96), Expect = 0.001
Identities = 25/58 (43%), Positives = 32/58 (55%)
Frame = +3
Query: 52 SQGKALTSDVWLYLVKVGIVDGVEKCRCKACHKLLTCESGSGTSHLKRHVRSCSKTIK 109
S+ +TS VW + +V +G K CK C KLL + GTSHLKRH+ C K K
Sbjct: 165 SKRPKMTSKVWDEMERVQTTEG-NKVLCKYCGKLL--QDNCGTSHLKRHLVICPKRPK 329
>BQ751384
Length = 455
Score = 38.9 bits (89), Expect = 0.007
Identities = 22/97 (22%), Positives = 50/97 (50%), Gaps = 3/97 (3%)
Frame = -1
Query: 138 LARIMITHGAPFNMVEWKVFREYQKFLNDDCVFVSRNTIAKEILNVYRDEKQKLKSQL-A 196
+ +++ + F++++ K F++ + N ++R+ + + Y + +L A
Sbjct: 293 ILNLIVENNLSFSILDSKSFKDLLNYYNKSNPILNRHKVKNLLEFTYSRFLSTINYELEA 114
Query: 197 QIR--GRVCLTSDCWTACSNEGYISLTAHYVNVNWKL 231
I+ G+ LT D WT+ S + Y+S+ Y+N ++KL
Sbjct: 113 NIKSLGKFSLTLDIWTSKSQDTYLSIIISYINSSFKL 3
>TC90414
Length = 621
Score = 36.6 bits (83), Expect = 0.032
Identities = 21/54 (38%), Positives = 29/54 (52%), Gaps = 2/54 (3%)
Frame = +1
Query: 72 DGVEKCRCKACHKLLTCESGSGTSHLKRHVRSCSKTIKNHDVGEMM--IDVEGK 123
DG K CK C K L E+ +GTSHLK H+ C+ K + ++ +V GK
Sbjct: 415 DGKFKAICKYCDKKLGGETTNGTSHLKDHLSICAARNKRSPMQALLKVSEVPGK 576
>BF645752 homologue to GP|22713420|gb| Unknown (protein for MGC:33586) {Homo
sapiens}, partial (1%)
Length = 321
Score = 34.7 bits (78), Expect = 0.12
Identities = 19/54 (35%), Positives = 29/54 (53%)
Frame = +3
Query: 138 LARIMITHGAPFNMVEWKVFREYQKFLNDDCVFVSRNTIAKEILNVYRDEKQKL 191
+AR++I PF++VE F K L SR T+A++ ++ DEK KL
Sbjct: 153 IARLVILSKLPFSVVESDRFNRLCKLLQPLWNIPSRRTVARDCFRMFXDEKFKL 314
>TC88660 PIR|T48044|T48044 hypothetical protein T12C14.220 - Arabidopsis
thaliana, partial (2%)
Length = 865
Score = 27.7 bits (60), Expect(2) = 0.38
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +3
Query: 636 YRSSMKDDSVQALLCARSWL 655
YRSS+ + +AL+C ++WL
Sbjct: 54 YRSSLSPEMAEALICTQNWL 113
Score = 23.9 bits (50), Expect(2) = 0.38
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = +1
Query: 620 VASESAFSIGARVVN 634
VASESAFS G R+++
Sbjct: 7 VASESAFSTGGRILD 51
>AL382486
Length = 492
Score = 32.0 bits (71), Expect = 0.80
Identities = 16/55 (29%), Positives = 32/55 (58%)
Frame = +3
Query: 594 FWKERSRRSPNLARMACDILSIPITTVASESAFSIGARVVNRYRSSMKDDSVQAL 648
FW + P L+ +A D + +PI++ E +FSI +++ R ++ +S++AL
Sbjct: 255 FWLGMVNQLPLLSNIALDYIWLPISSCTVERSFSIYNTILDDDRQNLSLESLKAL 419
>TC87387 homologue to PIR|T47775|T47775 hypothetical protein F24I3.230 -
Arabidopsis thaliana, partial (14%)
Length = 1074
Score = 31.6 bits (70), Expect = 1.0
Identities = 36/127 (28%), Positives = 54/127 (42%), Gaps = 1/127 (0%)
Frame = +3
Query: 3 VDGEIESQAREIPPVALIDQNAQEVSSDPKDKKRKGKAKAKDKDTGKVKSQGKALTSDVW 62
VDGE + + +++ D A EV D K+KK K K KDK+ G S
Sbjct: 318 VDGEEKVKTKKV------DDAAVEVEDDKKEKK---KKKKKDKENGAAASD--------- 443
Query: 63 LYLVKVGIVDGVEKCRCKACHKLLTCESG-SGTSHLKRHVRSCSKTIKNHDVGEMMIDVE 121
+ VEK + K HK E G G+ +++ + K + +VG +D
Sbjct: 444 --------EEKVEKEK-KKKHK----EKGEDGSPEVEKSDKKKKKHKETSEVGSPEVDKS 584
Query: 122 GKLRKKK 128
K +KKK
Sbjct: 585 EKKKKKK 605
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.320 0.135 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,982,978
Number of Sequences: 36976
Number of extensions: 315358
Number of successful extensions: 1717
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 1689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1709
length of query: 679
length of database: 9,014,727
effective HSP length: 103
effective length of query: 576
effective length of database: 5,206,199
effective search space: 2998770624
effective search space used: 2998770624
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)
Medicago: description of AC148607.13